Wall clock time and date at job start Fri Apr 10 2020 20:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52307 * 2 1 4 4 C 1.53188 * 109.49733 * 239.91309 * 2 1 3 5 5 N 1.46925 * 108.77287 * 185.41119 * 4 2 1 6 6 C 1.34778 * 120.63218 * 233.63143 * 5 4 2 7 7 O 1.21284 * 120.00053 * 354.62400 * 6 5 4 8 8 C 1.50701 * 120.00200 * 174.62674 * 6 5 4 9 9 C 1.52999 * 109.47469 * 64.58412 * 8 6 5 10 10 C 1.52995 * 109.47138 * 184.58982 * 8 6 5 11 11 C 1.53007 * 109.46962 * 304.58838 * 8 6 5 12 12 C 1.52998 * 117.49712 * 253.55669 * 11 8 6 13 13 C 1.52992 * 117.49802 * 184.89523 * 11 8 6 14 14 C 1.46926 * 118.73999 * 53.61393 * 5 4 2 15 15 C 1.53196 * 108.77338 * 306.38918 * 14 5 4 16 16 C 1.53039 * 109.31281 * 54.63231 * 15 14 5 17 17 H 1.08997 * 109.45885 * 58.64175 * 16 15 14 18 18 N 1.46503 * 109.45987 * 178.61412 * 16 15 14 19 19 C 1.36932 * 120.00125 * 275.00402 * 18 16 15 20 20 H 1.08003 * 120.00130 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00209 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99647 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00382 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47312 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.46755 * 300.00107 * 23 21 19 26 26 H 1.48497 * 109.47044 * 59.99742 * 23 21 19 27 27 H 1.08999 * 109.47349 * 299.92363 * 1 2 3 28 28 H 1.08997 * 109.46992 * 59.91989 * 1 2 3 29 29 H 1.09004 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.58417 * 65.62903 * 4 2 1 31 31 H 1.09000 * 109.70786 * 305.27186 * 4 2 1 32 32 H 1.09002 * 109.46979 * 65.09013 * 9 8 6 33 33 H 1.09002 * 109.47419 * 185.09005 * 9 8 6 34 34 H 1.09000 * 109.47109 * 305.09494 * 9 8 6 35 35 H 1.08998 * 109.47775 * 54.98187 * 10 8 6 36 36 H 1.09008 * 109.47131 * 174.98088 * 10 8 6 37 37 H 1.09002 * 109.47234 * 294.98054 * 10 8 6 38 38 H 1.09004 * 115.55110 * 39.22164 * 11 8 6 39 39 H 1.09006 * 117.49918 * 359.97438 * 12 11 8 40 40 H 1.08997 * 117.50271 * 145.01829 * 12 11 8 41 41 H 1.09002 * 117.49592 * 214.97684 * 13 11 8 42 42 H 1.08995 * 117.50217 * 359.97438 * 13 11 8 43 43 H 1.09002 * 109.59177 * 186.60273 * 14 5 4 44 44 H 1.08998 * 109.58918 * 66.17208 * 14 5 4 45 45 H 1.09003 * 109.49432 * 294.68395 * 15 14 5 46 46 H 1.09000 * 109.49666 * 174.58422 * 15 14 5 47 47 H 0.97003 * 119.99647 * 95.00012 * 18 16 15 48 48 H 0.97005 * 119.99563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8291 -1.1694 6 6 4.2811 -0.3857 -2.1778 7 8 3.7729 0.0158 -3.2032 8 6 5.7810 -0.3888 -2.0312 9 6 6.2784 -1.8303 -1.9065 10 6 6.4149 0.2649 -3.2607 11 6 6.1725 0.3960 -0.7775 12 6 6.7952 1.7794 -0.9758 13 6 7.6646 0.6074 -0.5137 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7229 1.2484 17 1 1.6967 -1.7571 1.2352 18 7 1.5264 -0.0527 2.4454 19 6 1.3950 -0.7492 3.6170 20 1 1.6702 -1.7928 3.6586 21 6 0.9082 -0.1141 4.7512 22 7 0.5734 1.1578 4.7005 23 14 0.7283 -1.0644 6.3493 24 1 0.1909 -0.1654 7.4020 25 1 -0.2049 -2.2016 6.1465 26 1 2.0552 -1.5819 6.7695 27 1 -0.3634 0.5126 0.8906 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7638 -0.1581 -2.1388 31 1 1.6054 -1.7217 -1.3004 32 1 6.0797 -2.3649 -2.8354 33 1 7.3506 -1.8291 -1.7102 34 1 5.7591 -2.3240 -1.0850 35 1 5.9938 1.2604 -3.4009 36 1 7.4924 0.3434 -3.1156 37 1 6.2103 -0.3434 -4.1418 38 1 5.5235 0.2555 0.0869 39 1 6.9264 2.1303 -1.9995 40 1 6.5563 2.5489 -0.2418 41 1 7.9973 0.6063 0.5244 42 1 8.3674 0.1870 -1.2329 43 1 5.1896 -1.3245 -0.0135 44 1 3.8375 -2.4817 0.0870 45 1 3.9158 0.3390 1.2541 46 1 3.9333 -1.1895 2.1672 47 1 1.2790 0.8845 2.4079 48 1 0.2328 1.6015 5.4931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036145364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:00 Heat of formation + Delta-G solvation = 3.938535 kcal Electronic energy + Delta-G solvation = -25622.012743 eV Core-core repulsion = 22292.123275 eV Total energy + Delta-G solvation = -3329.889468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91091 -38.27092 -37.37305 -34.65391 -33.34003 -32.46952 -31.47861 -29.32543 -27.74892 -26.46706 -25.23658 -24.10565 -22.80998 -22.35916 -21.67149 -20.59074 -19.64609 -18.47243 -17.10705 -16.93554 -16.23508 -15.50950 -15.07764 -14.87238 -14.42887 -14.24925 -13.78012 -13.63053 -13.38517 -13.32453 -12.96025 -12.64346 -12.45004 -12.35689 -12.15233 -11.94040 -11.77630 -11.62376 -11.53020 -11.19763 -11.14321 -10.93867 -10.89666 -10.68296 -10.60391 -10.55170 -10.39086 -10.24100 -10.05405 -9.73955 -9.62298 -9.37460 -8.90459 -8.41391 -6.97951 -5.79057 -3.07750 2.72246 3.14748 3.41206 3.46162 3.47070 3.68471 4.33783 4.49635 4.56291 4.74353 4.91156 4.93570 5.05708 5.08971 5.23343 5.27450 5.30117 5.36358 5.44822 5.52560 5.52642 5.60045 5.63880 5.67946 5.72832 5.74800 5.81216 5.84675 5.97780 6.01333 6.03431 6.06243 6.09127 6.14999 6.23374 6.30745 6.40155 6.43408 6.55280 6.65443 6.80897 6.92709 7.05050 7.58819 7.66381 8.31301 8.39186 9.50565 10.08170 10.43144 11.43343 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.004321 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.227910 B = 6478.070890 C = 7151.519768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.528 3.472 7 O -0.550 6.550 8 C -0.049 4.049 9 C -0.151 4.151 10 C -0.129 4.129 11 C -0.164 4.164 12 C -0.179 4.179 13 C -0.172 4.172 14 C 0.086 3.914 15 C -0.153 4.153 16 C 0.185 3.815 17 H 0.047 0.953 18 N -0.720 5.720 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.287 1.287 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -3.905 -13.232 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.334 5.334 6 C 0.316 3.684 7 O -0.427 6.427 8 C -0.052 4.052 9 C -0.209 4.209 10 C -0.186 4.186 11 C -0.181 4.181 12 C -0.216 4.216 13 C -0.209 4.209 14 C -0.037 4.037 15 C -0.195 4.195 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.360 5.360 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.000 -3.812 -13.613 18.543 hybrid contribution -0.197 -0.174 1.165 1.194 sum 11.803 -3.985 -12.448 17.611 Atomic orbital electron populations 1.21656 0.94168 1.01731 1.01813 1.21732 0.96529 0.99992 0.94661 0.91329 1.21690 0.78737 1.00692 0.99177 1.48075 1.06931 1.60261 1.18143 1.20414 0.88776 0.76467 0.82741 1.90648 1.75455 1.48101 1.28545 1.20227 0.91951 0.97073 0.95934 1.22148 1.02124 0.93630 1.02948 1.21762 0.99550 1.01409 0.95887 1.22718 0.97042 0.99300 0.99086 1.23143 1.03952 0.91522 1.02980 1.22958 0.92707 1.02889 1.02341 1.22428 0.99226 0.97216 0.84847 1.22731 1.00525 1.00282 0.95914 1.20177 0.90294 0.95668 0.86418 0.93475 1.42401 1.76513 1.11372 1.05758 1.19166 1.36060 0.94036 0.87741 0.91323 1.24717 1.02048 0.95990 0.98008 1.69652 1.49949 1.09447 1.28998 0.86309 0.77734 0.78737 0.83633 1.21749 1.21313 1.21337 0.90779 0.93854 0.93080 0.89568 0.91769 0.92104 0.91299 0.90798 0.91614 0.92090 0.92035 0.85632 0.88179 0.88705 0.88552 0.88729 0.88185 0.91639 0.92142 0.90607 0.78230 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.79 5.70 -3.71 -0.02 1.77 16 5 N -0.60 -8.57 2.96 -172.77 -0.51 -9.08 16 6 C 0.53 7.79 6.48 -10.98 -0.07 7.72 16 7 O -0.55 -9.83 15.41 5.55 0.09 -9.75 16 8 C -0.05 -0.55 0.60 -155.66 -0.09 -0.65 16 9 C -0.15 -1.42 8.08 37.16 0.30 -1.12 16 10 C -0.13 -1.37 6.41 37.15 0.24 -1.13 16 11 C -0.16 -1.80 4.05 -90.62 -0.37 -2.16 16 12 C -0.18 -1.85 9.64 -26.69 -0.26 -2.11 16 13 C -0.17 -1.55 9.33 -26.70 -0.25 -1.80 16 14 C 0.09 1.11 4.06 -3.71 -0.02 1.09 16 15 C -0.15 -2.49 5.31 -26.61 -0.14 -2.63 16 16 C 0.18 3.45 2.19 -67.89 -0.15 3.30 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.07 4.41 -53.39 -0.24 -17.30 16 19 C -0.24 -6.33 9.93 -15.06 -0.15 -6.47 16 20 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 23 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.53 7.47 -51.93 -0.39 0.15 16 34 H 0.07 0.68 4.99 -51.93 -0.26 0.42 16 35 H 0.06 0.78 6.98 -51.93 -0.36 0.42 16 36 H 0.06 0.52 6.63 -51.92 -0.34 0.18 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.13 1.56 4.19 -51.93 -0.22 1.34 16 39 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.74 7.02 -51.93 -0.36 0.37 16 43 H 0.10 1.12 2.91 -51.93 -0.15 0.97 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.04 7.18 -51.93 -0.37 0.66 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.38 9.86 7.51 -40.82 -0.31 9.56 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -30.13 356.35 -8.56 -38.69 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.02 Total: 10.53 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.96 Total: -8.54 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.02 Total: -53.13 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.13 -8.56 -38.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036145364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.631 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds