Wall clock time and date at job start Fri Apr 10 2020 20:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.49940 * 2 1 4 4 C 1.53194 * 109.49115 * 120.09687 * 2 1 3 5 5 N 1.46933 * 108.77081 * 174.58665 * 4 2 1 6 6 C 1.34774 * 120.62931 * 126.41254 * 5 4 2 7 7 O 1.21280 * 120.00322 * 354.37410 * 6 5 4 8 8 C 1.50699 * 119.99896 * 174.37668 * 6 5 4 9 9 C 1.53005 * 109.47188 * 183.21543 * 8 6 5 10 10 C 1.53006 * 109.46931 * 303.21243 * 8 6 5 11 11 C 1.53002 * 109.47261 * 63.21149 * 8 6 5 12 12 C 1.53001 * 117.49775 * 240.67221 * 11 8 6 13 13 C 1.53002 * 60.00072 * 252.51127 * 12 11 8 14 14 C 1.46928 * 118.73944 * 306.38834 * 5 4 2 15 15 C 1.53197 * 108.77157 * 53.60827 * 14 5 4 16 16 C 1.53033 * 109.31668 * 305.36673 * 15 14 5 17 17 H 1.09002 * 109.45179 * 181.38392 * 16 15 14 18 18 N 1.46500 * 109.45771 * 301.34605 * 16 15 14 19 19 C 1.36939 * 120.00040 * 275.06813 * 18 16 15 20 20 H 1.08002 * 120.00115 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00064 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00111 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99926 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47175 * 89.99943 * 23 21 19 25 25 H 1.48495 * 109.47469 * 209.99743 * 23 21 19 26 26 H 1.48504 * 109.47534 * 329.99832 * 23 21 19 27 27 H 1.08996 * 109.47671 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47189 * 60.06523 * 1 2 3 29 29 H 1.08998 * 109.47508 * 300.06990 * 1 2 3 30 30 H 1.08994 * 109.58842 * 294.36852 * 4 2 1 31 31 H 1.08992 * 109.58660 * 54.79887 * 4 2 1 32 32 H 1.08999 * 109.46951 * 53.70398 * 9 8 6 33 33 H 1.08999 * 109.47165 * 173.71031 * 9 8 6 34 34 H 1.09006 * 109.46531 * 293.70868 * 9 8 6 35 35 H 1.08999 * 109.47265 * 60.17001 * 10 8 6 36 36 H 1.09000 * 109.47078 * 180.17399 * 10 8 6 37 37 H 1.09003 * 109.46907 * 300.16762 * 10 8 6 38 38 H 1.09001 * 115.54882 * 26.38170 * 11 8 6 39 39 H 1.09003 * 117.50001 * 359.97438 * 12 11 8 40 40 H 1.09001 * 117.49989 * 145.01833 * 12 11 8 41 41 H 1.08994 * 117.49597 * 252.51296 * 13 12 11 42 42 H 1.09001 * 117.49777 * 107.48901 * 13 12 11 43 43 H 1.08994 * 109.58916 * 293.82670 * 14 5 4 44 44 H 1.08991 * 109.58650 * 173.39257 * 14 5 4 45 45 H 1.09006 * 109.49589 * 185.40835 * 15 14 5 46 46 H 1.09004 * 109.52373 * 65.33930 * 15 14 5 47 47 H 0.96994 * 120.00187 * 95.06805 * 18 16 15 48 48 H 0.96998 * 119.99992 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 1.2494 5 7 3.5045 -0.8295 1.1694 6 6 4.2810 -0.3871 2.1783 7 8 3.7814 0.1952 3.1176 8 6 5.7700 -0.6158 2.1392 9 6 6.4006 -0.0916 3.4309 10 6 6.0525 -2.1136 2.0051 11 6 6.3686 0.1253 0.9420 12 6 7.0849 -0.7110 -0.1204 13 6 7.8939 0.1727 0.8312 14 6 4.1053 -1.4268 -0.0310 15 6 3.5708 -0.6948 -1.2661 16 6 2.0408 -0.7227 -1.2485 17 1 1.6584 -0.2238 -2.1390 18 7 1.5783 -2.1127 -1.2313 19 6 1.4482 -2.8056 -2.4053 20 1 1.6861 -2.3272 -3.3439 21 6 1.0094 -4.1224 -2.3891 22 7 0.7190 -4.7053 -1.2453 23 14 0.8312 -5.0673 -3.9906 24 1 2.1085 -5.7576 -4.3028 25 1 -0.2539 -6.0719 -3.8546 26 1 0.4974 -4.1237 -5.0876 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5128 -0.8906 29 1 -0.3634 0.5149 0.8893 30 1 1.7637 -0.1586 2.1388 31 1 1.6051 -1.7219 1.2976 32 1 5.8967 -0.5377 4.2883 33 1 7.4578 -0.3562 3.4525 34 1 6.2965 0.9927 3.4719 35 1 5.6058 -2.4865 1.0834 36 1 7.1295 -2.2794 1.9799 37 1 5.6234 -2.6419 2.8565 38 1 5.8120 0.9994 0.6040 39 1 7.1300 -1.7891 0.0339 40 1 6.9994 -0.3873 -1.1577 41 1 8.3406 1.0778 0.4199 42 1 8.4708 -0.3240 1.6112 43 1 3.8375 -2.4818 -0.0874 44 1 5.1895 -1.3247 0.0135 45 1 3.9335 -1.1892 -2.1673 46 1 3.9160 0.3391 -1.2545 47 1 1.3643 -2.5423 -0.3884 48 1 0.4121 -5.6254 -1.2340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036145366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:03 Heat of formation + Delta-G solvation = 5.092736 kcal Electronic energy + Delta-G solvation = -26103.243832 eV Core-core repulsion = 22773.404414 eV Total energy + Delta-G solvation = -3329.839418 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83367 -38.30482 -37.39294 -34.19489 -33.08035 -32.48864 -31.35289 -29.14376 -27.66027 -26.37567 -25.25424 -23.88905 -23.40052 -22.35486 -21.59574 -20.69478 -18.80927 -17.91550 -17.35101 -16.99512 -15.91485 -15.45045 -14.89747 -14.84249 -14.29579 -14.11508 -13.84461 -13.54054 -13.29114 -13.24419 -12.85235 -12.58778 -12.50684 -12.34426 -12.21703 -11.77899 -11.51614 -11.44731 -11.29539 -11.19125 -11.11085 -10.91089 -10.84919 -10.75396 -10.61879 -10.43828 -10.39095 -10.18662 -9.81044 -9.78411 -9.53368 -9.24335 -8.89971 -8.11934 -6.96600 -5.79114 -3.07146 2.89403 3.36521 3.40631 3.46805 3.48102 3.63146 4.48417 4.57255 4.61306 4.74266 4.86324 5.06796 5.11471 5.24445 5.37326 5.38235 5.41444 5.51397 5.58142 5.60590 5.64244 5.71793 5.75693 5.80867 5.83802 5.86517 5.94658 5.98970 6.01895 6.09129 6.11998 6.14677 6.20453 6.25908 6.29520 6.40178 6.47040 6.53712 6.69175 6.72680 6.81654 6.97212 7.06733 7.68324 7.83701 8.39617 8.49583 9.51173 10.08673 10.43898 11.43417 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.005071 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.907154 B = 5520.147698 C = 6193.989421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.117 3.883 5 N -0.595 5.595 6 C 0.524 3.476 7 O -0.555 6.555 8 C -0.049 4.049 9 C -0.121 4.121 10 C -0.159 4.159 11 C -0.142 4.142 12 C -0.183 4.183 13 C -0.172 4.172 14 C 0.090 3.910 15 C -0.147 4.147 16 C 0.178 3.822 17 H 0.049 0.951 18 N -0.718 5.718 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.903 3.097 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.126 9.049 4.698 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.082 0.918 4 C -0.005 4.005 5 N -0.326 5.326 6 C 0.311 3.689 7 O -0.434 6.434 8 C -0.052 4.052 9 C -0.179 4.179 10 C -0.216 4.216 11 C -0.160 4.160 12 C -0.220 4.220 13 C -0.209 4.209 14 C -0.031 4.031 15 C -0.188 4.188 16 C 0.068 3.932 17 H 0.067 0.933 18 N -0.360 5.360 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.209 1.209 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.814 9.273 5.009 15.832 hybrid contribution -0.248 -0.789 -0.820 1.165 sum 11.566 8.484 4.190 14.943 Atomic orbital electron populations 1.21668 0.94366 1.03123 1.00346 1.21682 0.96376 0.98781 0.95873 0.91790 1.21639 0.79041 1.01335 0.98497 1.48039 1.06761 1.59623 1.18154 1.20385 0.88503 0.78045 0.81930 1.90635 1.75434 1.42411 1.34936 1.20254 0.92010 0.96814 0.96156 1.21607 0.99395 1.01681 0.95181 1.22293 1.02216 0.93197 1.03873 1.22202 0.94801 1.01649 0.97348 1.23247 1.03743 0.98870 0.96093 1.23020 0.93203 1.02126 1.02575 1.22373 0.98864 0.98413 0.83496 1.22488 1.00239 0.98512 0.97593 1.20215 0.90968 0.87313 0.94723 0.93348 1.42465 1.78958 1.07714 1.06892 1.19219 1.37021 0.93861 0.86590 0.91314 1.24689 1.02357 0.97194 0.96540 1.69649 1.51793 1.13037 1.23660 0.86250 0.77265 0.79844 0.83165 1.21859 1.21911 1.20877 0.91071 0.92899 0.93832 0.89997 0.90810 0.91970 0.92298 0.92077 0.90146 0.91602 0.91994 0.87584 0.87595 0.88351 0.88835 0.88638 0.90319 0.88147 0.90996 0.93571 0.78116 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.05 37.16 0.34 -1.92 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.12 2.05 5.43 -3.71 -0.02 2.03 16 5 N -0.59 -9.78 2.96 -172.77 -0.51 -10.29 16 6 C 0.52 8.56 6.42 -10.99 -0.07 8.49 16 7 O -0.56 -10.72 15.35 5.56 0.09 -10.64 16 8 C -0.05 -0.62 0.61 -155.65 -0.09 -0.71 16 9 C -0.12 -1.41 7.45 37.16 0.28 -1.14 16 10 C -0.16 -1.85 6.83 37.16 0.25 -1.59 16 11 C -0.14 -1.56 3.96 -90.62 -0.36 -1.92 16 12 C -0.18 -1.77 7.59 -26.73 -0.20 -1.97 16 13 C -0.17 -1.52 9.50 -26.73 -0.25 -1.77 16 14 C 0.09 1.43 4.12 -3.71 -0.02 1.41 16 15 C -0.15 -2.42 5.78 -26.61 -0.15 -2.58 16 16 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.72 -16.45 3.64 -53.39 -0.19 -16.65 16 19 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 20 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 23 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 31 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 32 H 0.06 0.79 7.96 -51.93 -0.41 0.37 16 33 H 0.06 0.55 7.10 -51.93 -0.37 0.18 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.00 4.35 -51.93 -0.23 0.78 16 36 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.29 8.05 -51.93 -0.42 0.87 16 39 H 0.11 1.01 5.74 -51.93 -0.30 0.71 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.77 7.20 -51.93 -0.37 0.40 16 43 H 0.08 1.48 7.63 -51.93 -0.40 1.09 16 44 H 0.10 1.33 1.44 -51.93 -0.07 1.25 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.38 9.47 5.92 -40.82 -0.24 9.23 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -29.32 354.59 -8.60 -37.91 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.06 Total: 11.20 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.96 Total: -7.24 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.02 Total: -53.22 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.32 -8.60 -37.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036145366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.007 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds