Wall clock time and date at job start Fri Apr 10 2020 20:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.49940 * 2 1 4 4 C 1.53194 * 109.49115 * 120.09687 * 2 1 3 5 5 N 1.46933 * 108.77081 * 174.58665 * 4 2 1 6 6 C 1.34774 * 120.62931 * 126.41254 * 5 4 2 7 7 O 1.21280 * 120.00322 * 354.37410 * 6 5 4 8 8 C 1.50699 * 119.99896 * 174.37668 * 6 5 4 9 9 C 1.53005 * 109.47188 * 183.21543 * 8 6 5 10 10 C 1.53006 * 109.46931 * 303.21243 * 8 6 5 11 11 C 1.53002 * 109.47261 * 63.21149 * 8 6 5 12 12 C 1.53001 * 117.49775 * 240.67221 * 11 8 6 13 13 C 1.53002 * 60.00072 * 252.51127 * 12 11 8 14 14 C 1.46928 * 118.73944 * 306.38834 * 5 4 2 15 15 C 1.53197 * 108.77157 * 53.60827 * 14 5 4 16 16 C 1.53033 * 109.31668 * 305.36673 * 15 14 5 17 17 H 1.09002 * 109.45179 * 181.38392 * 16 15 14 18 18 N 1.46500 * 109.45771 * 301.34605 * 16 15 14 19 19 C 1.36939 * 120.00040 * 275.06813 * 18 16 15 20 20 H 1.08002 * 120.00115 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00064 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00111 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99926 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47175 * 89.99943 * 23 21 19 25 25 H 1.48495 * 109.47469 * 209.99743 * 23 21 19 26 26 H 1.48504 * 109.47534 * 329.99832 * 23 21 19 27 27 H 1.08996 * 109.47671 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47189 * 60.06523 * 1 2 3 29 29 H 1.08998 * 109.47508 * 300.06990 * 1 2 3 30 30 H 1.08994 * 109.58842 * 294.36852 * 4 2 1 31 31 H 1.08992 * 109.58660 * 54.79887 * 4 2 1 32 32 H 1.08999 * 109.46951 * 53.70398 * 9 8 6 33 33 H 1.08999 * 109.47165 * 173.71031 * 9 8 6 34 34 H 1.09006 * 109.46531 * 293.70868 * 9 8 6 35 35 H 1.08999 * 109.47265 * 60.17001 * 10 8 6 36 36 H 1.09000 * 109.47078 * 180.17399 * 10 8 6 37 37 H 1.09003 * 109.46907 * 300.16762 * 10 8 6 38 38 H 1.09001 * 115.54882 * 26.38170 * 11 8 6 39 39 H 1.09003 * 117.50001 * 359.97438 * 12 11 8 40 40 H 1.09001 * 117.49989 * 145.01833 * 12 11 8 41 41 H 1.08994 * 117.49597 * 252.51296 * 13 12 11 42 42 H 1.09001 * 117.49777 * 107.48901 * 13 12 11 43 43 H 1.08994 * 109.58916 * 293.82670 * 14 5 4 44 44 H 1.08991 * 109.58650 * 173.39257 * 14 5 4 45 45 H 1.09006 * 109.49589 * 185.40835 * 15 14 5 46 46 H 1.09004 * 109.52373 * 65.33930 * 15 14 5 47 47 H 0.96994 * 120.00187 * 95.06805 * 18 16 15 48 48 H 0.96998 * 119.99992 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 1.2494 5 7 3.5045 -0.8295 1.1694 6 6 4.2810 -0.3871 2.1783 7 8 3.7814 0.1952 3.1176 8 6 5.7700 -0.6158 2.1392 9 6 6.4006 -0.0916 3.4309 10 6 6.0525 -2.1136 2.0051 11 6 6.3686 0.1253 0.9420 12 6 7.0849 -0.7110 -0.1204 13 6 7.8939 0.1727 0.8312 14 6 4.1053 -1.4268 -0.0310 15 6 3.5708 -0.6948 -1.2661 16 6 2.0408 -0.7227 -1.2485 17 1 1.6584 -0.2238 -2.1390 18 7 1.5783 -2.1127 -1.2313 19 6 1.4482 -2.8056 -2.4053 20 1 1.6861 -2.3272 -3.3439 21 6 1.0094 -4.1224 -2.3891 22 7 0.7190 -4.7053 -1.2453 23 14 0.8312 -5.0673 -3.9906 24 1 2.1085 -5.7576 -4.3028 25 1 -0.2539 -6.0719 -3.8546 26 1 0.4974 -4.1237 -5.0876 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5128 -0.8906 29 1 -0.3634 0.5149 0.8893 30 1 1.7637 -0.1586 2.1388 31 1 1.6051 -1.7219 1.2976 32 1 5.8967 -0.5377 4.2883 33 1 7.4578 -0.3562 3.4525 34 1 6.2965 0.9927 3.4719 35 1 5.6058 -2.4865 1.0834 36 1 7.1295 -2.2794 1.9799 37 1 5.6234 -2.6419 2.8565 38 1 5.8120 0.9994 0.6040 39 1 7.1300 -1.7891 0.0339 40 1 6.9994 -0.3873 -1.1577 41 1 8.3406 1.0778 0.4199 42 1 8.4708 -0.3240 1.6112 43 1 3.8375 -2.4818 -0.0874 44 1 5.1895 -1.3247 0.0135 45 1 3.9335 -1.1892 -2.1673 46 1 3.9160 0.3391 -1.2545 47 1 1.3643 -2.5423 -0.3884 48 1 0.4121 -5.6254 -1.2340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036145366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:03 Heat of formation + Delta-G solvation = -10.810197 kcal Electronic energy + Delta-G solvation = -26103.933435 eV Core-core repulsion = 22773.404414 eV Total energy + Delta-G solvation = -3330.529021 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03498 -39.56577 -38.64184 -35.82130 -34.50465 -33.65718 -32.95310 -30.89741 -28.68749 -27.63909 -26.74913 -25.42716 -24.75357 -23.17591 -22.96661 -21.82128 -20.17481 -19.25583 -19.18977 -18.08843 -17.20951 -16.69660 -16.47194 -16.11623 -15.71832 -15.64817 -15.23147 -14.83052 -14.78413 -14.46060 -14.26989 -13.88702 -13.67706 -13.53131 -13.21434 -12.97500 -12.92562 -12.85874 -12.78942 -12.65283 -12.40015 -12.27461 -12.10234 -12.04911 -11.94565 -11.84227 -11.74371 -11.57198 -11.34071 -11.15060 -10.91229 -10.72319 -10.39779 -9.54638 -8.90545 -7.87402 -5.13539 1.50282 1.51039 1.58753 1.60510 2.06655 2.60847 2.84981 3.42380 3.47370 3.66810 3.82901 3.87798 3.91986 4.03429 4.09759 4.11427 4.16973 4.24449 4.38635 4.43427 4.43917 4.58794 4.66435 4.69649 4.72886 4.82052 4.83990 4.84998 4.95569 4.98149 5.01045 5.05055 5.05733 5.12683 5.20833 5.25372 5.28658 5.29992 5.32593 5.35740 5.40593 5.47962 5.61231 5.67960 6.34267 6.51755 7.17334 7.41788 8.17954 8.42054 9.36089 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.005071 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.907154 B = 5520.147698 C = 6193.989421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.517 3.483 7 O -0.589 6.589 8 C -0.044 4.044 9 C -0.118 4.118 10 C -0.157 4.157 11 C -0.160 4.160 12 C -0.186 4.186 13 C -0.149 4.149 14 C 0.100 3.900 15 C -0.140 4.140 16 C 0.172 3.828 17 H 0.046 0.954 18 N -0.723 5.723 19 C -0.225 4.225 20 H 0.075 0.925 21 C -0.072 4.072 22 N -0.970 5.970 23 Si 0.963 3.037 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.272 1.272 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.131 0.869 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.373 0.627 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.533 10.396 3.832 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.307 3.693 7 O -0.470 6.470 8 C -0.047 4.047 9 C -0.175 4.175 10 C -0.214 4.214 11 C -0.179 4.179 12 C -0.223 4.223 13 C -0.186 4.186 14 C -0.021 4.021 15 C -0.181 4.181 16 C 0.063 3.937 17 H 0.064 0.936 18 N -0.364 5.364 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.265 4.265 22 N -0.622 5.622 23 Si 0.794 3.206 24 H -0.216 1.216 25 H -0.230 1.230 26 H -0.197 1.197 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.063 0.937 44 H 0.148 0.852 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.206 0.794 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.249 10.664 4.113 18.267 hybrid contribution -0.992 -1.116 -0.509 1.577 sum 13.257 9.548 3.604 16.730 Atomic orbital electron populations 1.21600 0.94134 1.01471 1.01695 1.21602 0.96536 0.99130 0.94435 0.90000 1.21482 0.80068 0.99918 0.98766 1.48096 1.06295 1.59584 1.18622 1.21191 0.90224 0.76989 0.80941 1.90611 1.76471 1.43905 1.35996 1.20258 0.89045 0.97682 0.97669 1.21608 1.00922 1.01047 0.93953 1.22296 1.04044 0.92246 1.02796 1.22087 0.96666 1.01736 0.97377 1.23336 1.03572 0.99103 0.96266 1.23116 0.91237 1.02261 1.01980 1.22338 1.00533 0.96232 0.83032 1.22372 0.98094 1.00014 0.97578 1.20437 0.92547 0.85202 0.95499 0.93623 1.42567 1.79089 1.09189 1.05583 1.19569 1.34637 0.93866 0.87656 0.90695 1.25372 1.03592 0.98412 0.99080 1.69808 1.53935 1.12859 1.25565 0.85282 0.76664 0.78419 0.80244 1.21647 1.23050 1.19707 0.94129 0.92158 0.91871 0.90322 0.93330 0.93567 0.89267 0.92755 0.91261 0.88578 0.93057 0.88604 0.87336 0.87817 0.87481 0.87249 0.93677 0.85158 0.91440 0.91078 0.79397 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.05 71.98 0.65 -3.65 16 2 C -0.10 -3.22 2.67 -10.72 -0.03 -3.25 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.12 4.31 5.43 86.36 0.47 4.78 16 5 N -0.60 -19.60 2.96 -818.92 -2.43 -22.03 16 6 C 0.52 16.75 6.42 87.66 0.56 17.31 16 7 O -0.59 -22.89 15.35 -3.03 -0.05 -22.94 16 8 C -0.04 -1.02 0.61 -52.92 -0.03 -1.06 16 9 C -0.12 -2.53 7.45 71.98 0.54 -1.99 16 10 C -0.16 -3.38 6.83 71.98 0.49 -2.89 16 11 C -0.16 -3.11 3.96 -10.79 -0.04 -3.15 16 12 C -0.19 -2.99 7.59 30.60 0.23 -2.75 16 13 C -0.15 -2.02 9.50 30.60 0.29 -1.73 16 14 C 0.10 3.11 4.12 86.36 0.36 3.47 16 15 C -0.14 -4.42 5.78 30.67 0.18 -4.24 16 16 C 0.17 6.35 2.53 45.01 0.11 6.47 16 17 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 18 N -0.72 -33.69 3.64 -322.82 -1.18 -34.87 16 19 C -0.23 -11.72 9.93 84.03 0.83 -10.89 16 20 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 22 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 23 Si 0.96 44.96 29.55 68.60 2.03 46.99 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H 0.04 1.57 7.53 -2.39 -0.02 1.56 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.85 7.00 -2.39 -0.02 2.83 16 31 H 0.05 1.98 6.64 -2.39 -0.02 1.96 16 32 H 0.05 1.13 7.96 -2.39 -0.02 1.11 16 33 H 0.09 1.35 7.10 -2.39 -0.02 1.33 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.65 4.35 -2.39 -0.01 1.64 16 36 H 0.10 1.49 7.30 -2.39 -0.02 1.47 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 2.10 8.05 -2.39 -0.02 2.08 16 39 H 0.11 1.71 5.74 -2.39 -0.01 1.70 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 1.21 7.20 -2.39 -0.02 1.20 16 43 H 0.04 1.73 7.63 -2.39 -0.02 1.71 16 44 H 0.13 3.26 1.44 -2.39 0.00 3.26 16 45 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.37 19.13 5.92 -92.71 -0.55 18.58 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -64.45 354.59 4.14 -60.31 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.40 Total: 37.18 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.08 Total: -7.11 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.32 Total: -114.44 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.45 4.14 -60.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036145366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.505 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds