Wall clock time and date at job start Fri Apr 10 2020 20:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49856 * 2 1 4 4 C 1.53189 * 109.49738 * 239.89939 * 2 1 3 5 5 N 1.46924 * 108.77330 * 185.41011 * 4 2 1 6 6 C 1.34778 * 120.63413 * 233.62908 * 5 4 2 7 7 O 1.21283 * 119.99946 * 354.76297 * 6 5 4 8 8 C 1.50698 * 120.00315 * 174.76373 * 6 5 4 9 9 C 1.53002 * 109.46845 * 64.66602 * 8 6 5 10 10 C 1.52995 * 109.47382 * 184.66657 * 8 6 5 11 11 C 1.53001 * 109.47190 * 304.67140 * 8 6 5 12 12 C 1.53005 * 117.49624 * 253.29178 * 11 8 6 13 13 C 1.52996 * 117.49963 * 184.67197 * 11 8 6 14 14 C 1.46924 * 118.73617 * 53.61702 * 5 4 2 15 15 C 1.53192 * 108.77329 * 306.38383 * 14 5 4 16 16 C 1.53035 * 109.49557 * 120.06138 * 2 1 3 17 17 H 1.08997 * 109.46364 * 301.32115 * 16 2 1 18 18 N 1.46500 * 109.46269 * 61.29877 * 16 2 1 19 19 C 1.36935 * 120.00298 * 204.99824 * 18 16 2 20 20 H 1.08000 * 119.99723 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00105 * 179.97438 * 19 18 16 22 22 N 1.31625 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47064 * 270.00028 * 23 21 19 25 25 H 1.48494 * 109.47282 * 29.99946 * 23 21 19 26 26 H 1.48500 * 109.46979 * 150.00220 * 23 21 19 27 27 H 1.08999 * 109.47003 * 299.93701 * 1 2 3 28 28 H 1.09001 * 109.47072 * 59.93384 * 1 2 3 29 29 H 1.08993 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.58764 * 305.20181 * 4 2 1 31 31 H 1.09010 * 109.58414 * 65.48567 * 4 2 1 32 32 H 1.08999 * 109.47379 * 55.04113 * 9 8 6 33 33 H 1.08998 * 109.47137 * 175.03695 * 9 8 6 34 34 H 1.09000 * 109.47660 * 295.03409 * 9 8 6 35 35 H 1.08999 * 109.47334 * 64.82083 * 10 8 6 36 36 H 1.08996 * 109.47151 * 184.82504 * 10 8 6 37 37 H 1.09002 * 109.47326 * 304.82609 * 10 8 6 38 38 H 1.09000 * 115.55180 * 38.98823 * 11 8 6 39 39 H 1.09006 * 117.49720 * 359.97438 * 12 11 8 40 40 H 1.08994 * 117.49991 * 145.02014 * 12 11 8 41 41 H 1.09000 * 117.49700 * 214.97939 * 13 11 8 42 42 H 1.09001 * 117.50041 * 359.97438 * 13 11 8 43 43 H 1.08998 * 109.59247 * 66.17577 * 14 5 4 44 44 H 1.09008 * 109.58594 * 186.60231 * 14 5 4 45 45 H 1.09000 * 109.49823 * 294.68222 * 15 14 5 46 46 H 1.09003 * 109.49765 * 174.58861 * 15 14 5 47 47 H 0.96999 * 119.99505 * 24.99741 * 18 16 2 48 48 H 0.96996 * 120.00036 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5046 -0.8294 -1.1693 6 6 4.2812 -0.3862 -2.1777 7 8 3.7729 0.0173 -3.2023 8 6 5.7811 -0.3922 -2.0324 9 6 6.2761 -1.8349 -1.9116 10 6 6.4152 0.2634 -3.2608 11 6 6.1750 0.3888 -0.7770 12 6 6.8056 1.7691 -0.9726 13 6 7.6678 0.5925 -0.5111 14 6 4.1053 -1.4267 0.0312 15 6 3.5708 -0.6946 1.2662 16 6 2.0408 -0.7226 1.2486 17 1 1.6584 -0.2236 2.1390 18 7 1.5784 -2.1126 1.2315 19 6 1.4482 -2.8054 2.4055 20 1 1.6860 -2.3269 3.3440 21 6 1.0095 -4.1223 2.3893 22 7 0.7192 -4.7052 1.2455 23 14 0.8313 -5.0671 3.9909 24 1 2.1085 -5.7573 4.3033 25 1 0.4974 -4.1235 5.0878 26 1 -0.2538 -6.0717 3.8548 27 1 -0.3633 0.5128 0.8905 28 1 -0.3633 0.5149 -0.8894 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6053 -1.7220 -1.2974 31 1 1.7616 -0.1599 -2.1390 32 1 5.9203 -2.4136 -2.7640 33 1 7.3659 -1.8450 -1.8952 34 1 5.8948 -2.2740 -0.9897 35 1 6.1307 1.3149 -3.2991 36 1 7.5003 0.1827 -3.1963 37 1 6.0664 -0.2404 -4.1623 38 1 5.5242 0.2503 0.0863 39 1 6.9402 2.1205 -1.9956 40 1 6.5697 2.5388 -0.2378 41 1 7.9992 0.5881 0.5273 42 1 8.3695 0.1697 -1.2302 43 1 3.8376 -2.4818 0.0875 44 1 5.1896 -1.3245 -0.0133 45 1 3.9160 0.3392 1.2540 46 1 3.9334 -1.1890 2.1675 47 1 1.3644 -2.5422 0.3885 48 1 0.4130 -5.6255 1.2342 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036145367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:07 Heat of formation + Delta-G solvation = 7.518687 kcal Electronic energy + Delta-G solvation = -26003.705595 eV Core-core repulsion = 22673.971374 eV Total energy + Delta-G solvation = -3329.734221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79489 -38.31643 -37.30328 -34.30895 -33.22769 -32.44647 -31.39670 -29.19097 -27.63165 -26.34382 -25.23681 -23.93954 -23.40125 -22.35922 -21.63658 -20.64915 -18.99851 -18.00240 -17.33379 -16.82800 -16.07667 -15.38914 -14.94658 -14.86129 -14.38764 -14.13648 -13.75002 -13.64233 -13.33268 -13.26226 -12.87722 -12.58186 -12.53560 -12.20945 -12.15207 -11.85668 -11.64163 -11.49276 -11.31263 -11.17920 -11.06515 -10.93349 -10.81128 -10.74164 -10.53025 -10.47990 -10.33100 -10.19448 -9.91234 -9.83462 -9.55053 -9.22877 -8.92430 -8.14932 -6.98153 -5.79878 -3.08275 2.88973 3.33458 3.40322 3.46402 3.47800 3.72349 4.42497 4.56466 4.60257 4.80042 4.94444 5.05862 5.10869 5.19787 5.34030 5.34973 5.38070 5.51339 5.52589 5.59699 5.61540 5.72868 5.73377 5.76684 5.79381 5.83273 5.90690 5.98669 6.02913 6.07491 6.10936 6.11766 6.18509 6.25116 6.29811 6.35598 6.43371 6.52618 6.66673 6.70536 6.78242 6.94611 7.04031 7.67432 7.81167 8.38658 8.48724 9.50293 10.07371 10.42515 11.42528 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004761 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.459547 B = 5880.055450 C = 6319.895397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.526 3.474 7 O -0.554 6.554 8 C -0.048 4.048 9 C -0.151 4.151 10 C -0.130 4.130 11 C -0.160 4.160 12 C -0.182 4.182 13 C -0.172 4.172 14 C 0.094 3.906 15 C -0.152 4.152 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.283 1.283 26 H -0.293 1.293 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.820 10.621 -4.509 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.314 3.686 7 O -0.433 6.433 8 C -0.051 4.051 9 C -0.208 4.208 10 C -0.187 4.187 11 C -0.178 4.178 12 C -0.219 4.219 13 C -0.209 4.209 14 C -0.028 4.028 15 C -0.193 4.193 16 C 0.069 3.931 17 H 0.068 0.932 18 N -0.360 5.360 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.209 1.209 26 H -0.219 1.219 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.505 10.748 -4.871 16.481 hybrid contribution -0.199 -0.825 0.818 1.179 sum 11.306 9.923 -4.053 15.579 Atomic orbital electron populations 1.21665 0.94302 1.03161 1.00367 1.21692 0.96433 0.98776 0.95854 0.91747 1.21619 0.78949 1.01440 0.98367 1.48027 1.06851 1.59646 1.18234 1.20366 0.88692 0.76723 0.82856 1.90635 1.75439 1.48629 1.28603 1.20211 0.92175 0.97084 0.95665 1.22135 1.01625 0.93553 1.03481 1.21782 0.99328 1.01153 0.96441 1.22719 0.96838 0.99024 0.99234 1.23155 1.04310 0.91480 1.02939 1.22928 0.92991 1.02726 1.02212 1.22288 0.97953 0.98858 0.83724 1.22574 1.00640 0.98472 0.97628 1.20193 0.90733 0.87377 0.94793 0.93248 1.42473 1.78930 1.07690 1.06930 1.19212 1.37160 0.93881 0.86573 0.91298 1.24696 1.02282 0.97196 0.96552 1.69651 1.51712 1.13025 1.23671 0.86247 0.77275 0.79843 0.83139 1.21843 1.20870 1.21897 0.92869 0.93812 0.91049 0.90820 0.90010 0.92053 0.91588 0.90493 0.91754 0.92288 0.91728 0.85731 0.88083 0.88969 0.88707 0.88730 0.89881 0.88870 0.93358 0.90808 0.78077 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.05 37.16 0.34 -1.89 16 2 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.06 5.40 -3.71 -0.02 2.04 16 5 N -0.60 -9.74 2.96 -172.77 -0.51 -10.25 16 6 C 0.53 8.59 6.48 -10.99 -0.07 8.52 16 7 O -0.55 -10.73 15.33 5.55 0.09 -10.64 16 8 C -0.05 -0.61 0.60 -155.66 -0.09 -0.70 16 9 C -0.15 -1.75 8.00 37.16 0.30 -1.45 16 10 C -0.13 -1.50 6.62 37.15 0.25 -1.26 16 11 C -0.16 -1.80 4.04 -90.62 -0.37 -2.16 16 12 C -0.18 -1.80 9.65 -26.73 -0.26 -2.06 16 13 C -0.17 -1.55 9.54 -26.73 -0.26 -1.81 16 14 C 0.09 1.47 3.99 -3.71 -0.01 1.45 16 15 C -0.15 -2.45 5.43 -26.61 -0.14 -2.59 16 16 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.72 -16.35 3.64 -53.39 -0.19 -16.54 16 19 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 20 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 23 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 30 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 31 H 0.08 1.44 7.05 -51.92 -0.37 1.07 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 34 H 0.08 0.93 5.05 -51.93 -0.26 0.67 16 35 H 0.06 0.77 6.41 -51.93 -0.33 0.43 16 36 H 0.06 0.55 7.20 -51.93 -0.37 0.17 16 37 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 38 H 0.13 1.52 4.18 -51.93 -0.22 1.30 16 39 H 0.10 0.97 5.77 -51.93 -0.30 0.67 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.78 7.19 -51.93 -0.37 0.41 16 43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 44 H 0.09 1.24 2.73 -51.92 -0.14 1.10 16 45 H 0.05 0.69 7.18 -51.93 -0.37 0.32 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.38 9.45 5.92 -40.82 -0.24 9.20 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -29.24 352.78 -8.46 -37.71 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.86 Total: 11.51 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.00 Total: -7.47 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.02 Total: -53.04 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.24 -8.46 -37.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036145367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.226 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds