Wall clock time and date at job start Fri Apr 10 2020 20:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49856 * 2 1 4 4 C 1.53189 * 109.49738 * 239.89939 * 2 1 3 5 5 N 1.46924 * 108.77330 * 185.41011 * 4 2 1 6 6 C 1.34778 * 120.63413 * 233.62908 * 5 4 2 7 7 O 1.21283 * 119.99946 * 354.76297 * 6 5 4 8 8 C 1.50698 * 120.00315 * 174.76373 * 6 5 4 9 9 C 1.53002 * 109.46845 * 64.66602 * 8 6 5 10 10 C 1.52995 * 109.47382 * 184.66657 * 8 6 5 11 11 C 1.53001 * 109.47190 * 304.67140 * 8 6 5 12 12 C 1.53005 * 117.49624 * 253.29178 * 11 8 6 13 13 C 1.52996 * 117.49963 * 184.67197 * 11 8 6 14 14 C 1.46924 * 118.73617 * 53.61702 * 5 4 2 15 15 C 1.53192 * 108.77329 * 306.38383 * 14 5 4 16 16 C 1.53035 * 109.49557 * 120.06138 * 2 1 3 17 17 H 1.08997 * 109.46364 * 301.32115 * 16 2 1 18 18 N 1.46500 * 109.46269 * 61.29877 * 16 2 1 19 19 C 1.36935 * 120.00298 * 204.99824 * 18 16 2 20 20 H 1.08000 * 119.99723 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00105 * 179.97438 * 19 18 16 22 22 N 1.31625 * 120.00098 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47064 * 270.00028 * 23 21 19 25 25 H 1.48494 * 109.47282 * 29.99946 * 23 21 19 26 26 H 1.48500 * 109.46979 * 150.00220 * 23 21 19 27 27 H 1.08999 * 109.47003 * 299.93701 * 1 2 3 28 28 H 1.09001 * 109.47072 * 59.93384 * 1 2 3 29 29 H 1.08993 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.58764 * 305.20181 * 4 2 1 31 31 H 1.09010 * 109.58414 * 65.48567 * 4 2 1 32 32 H 1.08999 * 109.47379 * 55.04113 * 9 8 6 33 33 H 1.08998 * 109.47137 * 175.03695 * 9 8 6 34 34 H 1.09000 * 109.47660 * 295.03409 * 9 8 6 35 35 H 1.08999 * 109.47334 * 64.82083 * 10 8 6 36 36 H 1.08996 * 109.47151 * 184.82504 * 10 8 6 37 37 H 1.09002 * 109.47326 * 304.82609 * 10 8 6 38 38 H 1.09000 * 115.55180 * 38.98823 * 11 8 6 39 39 H 1.09006 * 117.49720 * 359.97438 * 12 11 8 40 40 H 1.08994 * 117.49991 * 145.02014 * 12 11 8 41 41 H 1.09000 * 117.49700 * 214.97939 * 13 11 8 42 42 H 1.09001 * 117.50041 * 359.97438 * 13 11 8 43 43 H 1.08998 * 109.59247 * 66.17577 * 14 5 4 44 44 H 1.09008 * 109.58594 * 186.60231 * 14 5 4 45 45 H 1.09000 * 109.49823 * 294.68222 * 15 14 5 46 46 H 1.09003 * 109.49765 * 174.58861 * 15 14 5 47 47 H 0.96999 * 119.99505 * 24.99741 * 18 16 2 48 48 H 0.96996 * 120.00036 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5046 -0.8294 -1.1693 6 6 4.2812 -0.3862 -2.1777 7 8 3.7729 0.0173 -3.2023 8 6 5.7811 -0.3922 -2.0324 9 6 6.2761 -1.8349 -1.9116 10 6 6.4152 0.2634 -3.2608 11 6 6.1750 0.3888 -0.7770 12 6 6.8056 1.7691 -0.9726 13 6 7.6678 0.5925 -0.5111 14 6 4.1053 -1.4267 0.0312 15 6 3.5708 -0.6946 1.2662 16 6 2.0408 -0.7226 1.2486 17 1 1.6584 -0.2236 2.1390 18 7 1.5784 -2.1126 1.2315 19 6 1.4482 -2.8054 2.4055 20 1 1.6860 -2.3269 3.3440 21 6 1.0095 -4.1223 2.3893 22 7 0.7192 -4.7052 1.2455 23 14 0.8313 -5.0671 3.9909 24 1 2.1085 -5.7573 4.3033 25 1 0.4974 -4.1235 5.0878 26 1 -0.2538 -6.0717 3.8548 27 1 -0.3633 0.5128 0.8905 28 1 -0.3633 0.5149 -0.8894 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6053 -1.7220 -1.2974 31 1 1.7616 -0.1599 -2.1390 32 1 5.9203 -2.4136 -2.7640 33 1 7.3659 -1.8450 -1.8952 34 1 5.8948 -2.2740 -0.9897 35 1 6.1307 1.3149 -3.2991 36 1 7.5003 0.1827 -3.1963 37 1 6.0664 -0.2404 -4.1623 38 1 5.5242 0.2503 0.0863 39 1 6.9402 2.1205 -1.9956 40 1 6.5697 2.5388 -0.2378 41 1 7.9992 0.5881 0.5273 42 1 8.3695 0.1697 -1.2302 43 1 3.8376 -2.4818 0.0875 44 1 5.1896 -1.3245 -0.0133 45 1 3.9160 0.3392 1.2540 46 1 3.9334 -1.1890 2.1675 47 1 1.3644 -2.5422 0.3885 48 1 0.4130 -5.6255 1.2342 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036145367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:06 Heat of formation + Delta-G solvation = -8.406990 kcal Electronic energy + Delta-G solvation = -26004.396184 eV Core-core repulsion = 22673.971374 eV Total energy + Delta-G solvation = -3330.424810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00234 -39.56820 -38.51170 -35.88862 -34.64232 -33.64940 -32.96228 -30.93330 -28.65961 -27.58080 -26.73910 -25.43493 -24.78146 -23.06742 -23.04781 -21.77130 -20.29764 -19.34066 -19.25054 -17.87840 -17.32282 -16.67770 -16.42579 -16.16320 -15.82090 -15.68111 -15.11616 -14.91515 -14.81963 -14.44872 -14.26194 -13.91598 -13.60321 -13.43827 -13.18655 -12.99125 -12.89623 -12.85083 -12.83717 -12.62573 -12.47373 -12.37120 -12.10446 -12.06107 -11.92247 -11.86216 -11.57636 -11.42262 -11.40136 -11.14644 -10.91920 -10.75473 -10.41760 -9.56501 -8.91197 -7.87676 -5.13939 1.50153 1.50794 1.58571 1.61703 2.05292 2.60610 2.92160 3.40861 3.46736 3.65352 3.82595 3.87989 3.97658 4.04221 4.09714 4.13375 4.17142 4.27418 4.29604 4.40702 4.46747 4.55010 4.65439 4.69731 4.71057 4.82423 4.84526 4.85832 4.92070 4.98412 5.00307 5.04078 5.06086 5.12593 5.18516 5.24120 5.27255 5.31022 5.34418 5.37815 5.44372 5.48069 5.61001 5.66748 6.33926 6.50539 7.17620 7.41462 8.17859 8.41422 9.35771 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004761 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.459547 B = 5880.055450 C = 6319.895397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.122 3.878 5 N -0.597 5.597 6 C 0.519 3.481 7 O -0.589 6.589 8 C -0.042 4.042 9 C -0.149 4.149 10 C -0.126 4.126 11 C -0.180 4.180 12 C -0.182 4.182 13 C -0.151 4.151 14 C 0.103 3.897 15 C -0.143 4.143 16 C 0.173 3.827 17 H 0.048 0.952 18 N -0.724 5.724 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.963 3.037 24 H -0.290 1.290 25 H -0.271 1.271 26 H -0.304 1.304 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.372 0.628 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.197 12.399 -3.506 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.309 3.691 7 O -0.470 6.470 8 C -0.045 4.045 9 C -0.207 4.207 10 C -0.183 4.183 11 C -0.198 4.198 12 C -0.219 4.219 13 C -0.188 4.188 14 C -0.018 4.018 15 C -0.184 4.184 16 C 0.064 3.936 17 H 0.066 0.934 18 N -0.365 5.365 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.265 4.265 22 N -0.622 5.622 23 Si 0.794 3.206 24 H -0.217 1.217 25 H -0.196 1.196 26 H -0.231 1.231 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.141 0.859 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.206 0.794 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.911 12.573 -3.835 19.139 hybrid contribution -0.936 -1.282 0.459 1.653 sum 12.975 11.291 -3.376 17.528 Atomic orbital electron populations 1.21601 0.94161 1.01438 1.01731 1.21608 0.96504 0.99227 0.94298 0.89699 1.21459 0.79974 0.99918 0.98727 1.48081 1.06372 1.59598 1.18658 1.21185 0.90450 0.75568 0.81920 1.90612 1.76485 1.50125 1.29807 1.20214 0.89019 0.98107 0.97163 1.22141 1.03424 0.92607 1.02478 1.21780 1.00976 1.00464 0.95128 1.22592 0.98680 1.00446 0.98054 1.23231 1.04036 0.91200 1.03394 1.23041 0.91340 1.01088 1.03324 1.22228 0.99600 0.96632 0.83349 1.22440 0.98347 1.00142 0.97442 1.20429 0.92389 0.85169 0.95609 0.93425 1.42587 1.79081 1.09249 1.05579 1.19573 1.34606 0.93856 0.87682 0.90609 1.25380 1.03605 0.98454 0.99067 1.69813 1.53967 1.12821 1.25590 0.85279 0.76630 0.78428 0.80258 1.21708 1.19636 1.23085 0.92076 0.91870 0.94229 0.93583 0.90363 0.93278 0.88667 0.91284 0.92181 0.89367 0.93387 0.86663 0.87868 0.88406 0.87498 0.87386 0.93405 0.85914 0.90540 0.91300 0.79418 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.05 71.98 0.65 -3.59 16 2 C -0.10 -3.13 2.67 -10.72 -0.03 -3.16 16 3 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.12 4.32 5.40 86.36 0.47 4.79 16 5 N -0.60 -19.42 2.96 -818.90 -2.42 -21.85 16 6 C 0.52 16.72 6.48 87.66 0.57 17.29 16 7 O -0.59 -22.95 15.33 -3.04 -0.05 -23.00 16 8 C -0.04 -0.98 0.60 -52.93 -0.03 -1.01 16 9 C -0.15 -3.18 8.00 71.98 0.58 -2.60 16 10 C -0.13 -2.66 6.62 71.98 0.48 -2.18 16 11 C -0.18 -3.49 4.04 -10.79 -0.04 -3.53 16 12 C -0.18 -2.96 9.65 30.60 0.30 -2.66 16 13 C -0.15 -2.09 9.54 30.59 0.29 -1.80 16 14 C 0.10 3.18 3.99 86.36 0.34 3.53 16 15 C -0.14 -4.38 5.43 30.67 0.17 -4.21 16 16 C 0.17 6.26 2.53 45.02 0.11 6.37 16 17 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 18 N -0.72 -33.52 3.64 -322.83 -1.18 -34.69 16 19 C -0.23 -11.67 9.93 84.03 0.83 -10.84 16 20 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.97 -57.98 13.06 21.65 0.28 -57.70 16 23 Si 0.96 44.99 29.55 68.60 2.03 47.02 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.52 7.53 -2.39 -0.02 1.51 16 30 H 0.05 1.88 6.64 -2.39 -0.02 1.86 16 31 H 0.08 2.81 7.05 -2.38 -0.02 2.80 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.47 7.79 -2.39 -0.02 1.45 16 34 H 0.07 1.57 5.05 -2.39 -0.01 1.56 16 35 H 0.06 1.32 6.41 -2.39 -0.02 1.30 16 36 H 0.09 1.32 7.20 -2.39 -0.02 1.30 16 37 H 0.05 1.17 7.89 -2.39 -0.02 1.15 16 38 H 0.12 2.46 4.18 -2.39 -0.01 2.45 16 39 H 0.10 1.65 5.77 -2.38 -0.01 1.64 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 1.23 7.19 -2.39 -0.02 1.21 16 43 H 0.05 1.83 7.74 -2.39 -0.02 1.81 16 44 H 0.12 3.07 2.73 -2.38 -0.01 3.06 16 45 H 0.08 1.95 7.18 -2.39 -0.02 1.94 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.37 19.09 5.92 -92.71 -0.55 18.54 16 48 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -64.54 352.78 4.22 -60.32 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.41 Total: 37.08 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.15 Total: -7.18 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.32 Total: -114.24 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.54 4.22 -60.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036145367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.916 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds