Wall clock time and date at job start Fri Apr 10 2020 20:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.53007 * 109.46835 * 119.99884 * 2 1 3 5 5 C 1.50692 * 115.54923 * 299.68621 * 4 2 1 6 6 O 1.21281 * 120.00467 * 267.28915 * 5 4 2 7 7 N 1.34785 * 119.99700 * 87.28972 * 5 4 2 8 8 C 1.46923 * 120.63232 * 355.77726 * 7 5 4 9 9 C 1.53188 * 108.77773 * 126.40719 * 8 7 5 10 10 C 1.53046 * 109.31044 * 54.63548 * 9 8 7 11 11 H 1.09000 * 109.45716 * 58.65465 * 10 9 8 12 12 N 1.46495 * 109.46003 * 178.61222 * 10 9 8 13 13 C 1.36945 * 120.00324 * 275.06713 * 12 10 9 14 14 H 1.08000 * 119.99572 * 0.02562 * 13 12 10 15 15 C 1.38810 * 120.00153 * 179.97438 * 13 12 10 16 16 N 1.31614 * 120.00064 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99751 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47217 * 60.00797 * 17 15 13 19 19 H 1.48502 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47483 * 300.00627 * 17 15 13 21 21 C 1.53036 * 109.54087 * 298.63557 * 10 9 8 22 22 H 1.09003 * 109.49269 * 301.41594 * 21 10 9 23 23 C 1.52992 * 109.50206 * 181.31608 * 21 10 9 24 24 C 1.46928 * 120.62688 * 175.79456 * 7 5 4 25 25 C 1.52997 * 117.49884 * 85.36382 * 4 2 1 26 26 C 1.53000 * 117.49730 * 154.01941 * 4 2 1 27 27 H 1.08996 * 109.47143 * 54.32249 * 1 2 3 28 28 H 1.08993 * 109.47562 * 174.32665 * 1 2 3 29 29 H 1.09011 * 109.46930 * 294.32956 * 1 2 3 30 30 H 1.09003 * 109.46954 * 239.99424 * 2 1 3 31 31 H 1.09000 * 109.47163 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46868 * 299.99648 * 3 2 1 33 33 H 1.08994 * 109.47401 * 59.99502 * 3 2 1 34 34 H 1.08998 * 109.58656 * 246.19790 * 8 7 5 35 35 H 1.08998 * 109.58524 * 6.48088 * 8 7 5 36 36 H 1.09002 * 109.49634 * 174.58488 * 9 8 7 37 37 H 1.09001 * 109.50424 * 294.68804 * 9 8 7 38 38 H 0.96999 * 120.00302 * 95.07386 * 12 10 9 39 39 H 0.97001 * 120.00040 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47097 * 300.15984 * 23 21 10 41 41 H 1.09005 * 109.47404 * 60.15581 * 23 21 10 42 42 H 1.08993 * 109.47507 * 180.15976 * 23 21 10 43 43 H 1.08997 * 109.58500 * 113.80608 * 24 7 5 44 44 H 1.08997 * 109.58878 * 353.37387 * 24 7 5 45 45 H 1.09001 * 117.49559 * 215.00224 * 25 4 2 46 46 H 1.09007 * 117.50044 * 0.02562 * 25 4 2 47 47 H 1.09005 * 117.49527 * 359.97438 * 26 4 2 48 48 H 1.09000 * 117.50094 * 144.99228 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6217 -0.1169 2.5649 6 8 2.3376 0.6926 3.1153 7 7 0.4520 -0.4762 3.1299 8 6 -0.4685 -1.3846 2.4326 9 6 -0.8031 -2.5560 3.3613 10 6 -1.3404 -2.0130 4.6874 11 1 -2.2263 -1.4064 4.4992 12 7 -1.6926 -3.1312 5.5658 13 6 -2.9224 -3.7243 5.4598 14 1 -3.6324 -3.3679 4.7282 15 6 -3.2559 -4.7842 6.2917 16 7 -2.3904 -5.2188 7.1829 17 14 -4.9336 -5.5927 6.1474 18 1 -5.1011 -6.1445 4.7789 19 1 -5.0409 -6.6912 7.1410 20 1 -5.9928 -4.5851 6.4079 21 6 -0.2679 -1.1538 5.3609 22 1 0.6271 -1.7533 5.5269 23 6 -0.7941 -0.6383 6.7018 24 6 0.0729 0.0335 4.4548 25 6 2.1720 -2.2440 1.1815 26 6 3.4256 -1.3659 1.1767 27 1 -0.3633 0.5993 -0.8348 28 1 -0.3634 -1.0225 -0.1016 29 1 -0.3633 0.4234 0.9365 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 -1.3828 -0.8506 2.1739 35 1 0.0052 -1.7588 1.5251 36 1 -1.5590 -3.1867 2.8934 37 1 0.0970 -3.1423 3.5463 38 1 -1.0548 -3.4515 6.2227 39 1 -2.6235 -5.9593 7.7646 40 1 -1.6899 -0.0401 6.5349 41 1 -1.0365 -1.4834 7.3462 42 1 -0.0310 -0.0241 7.1797 43 1 -0.7973 0.6832 4.3611 44 1 0.9047 0.5929 4.8828 45 1 1.9562 -2.8088 2.0885 46 1 1.8959 -2.7320 0.2467 47 1 3.9738 -1.2764 0.2388 48 1 4.0348 -1.3528 2.0805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036166845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:11 Heat of formation + Delta-G solvation = -10.557662 kcal Electronic energy + Delta-G solvation = -25580.124988 eV Core-core repulsion = 22249.606918 eV Total energy + Delta-G solvation = -3330.518070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77126 -38.17331 -36.96382 -34.57345 -33.57005 -32.76981 -31.46124 -29.31941 -27.55528 -26.60004 -25.24674 -23.79406 -22.55923 -22.50186 -21.77913 -21.36879 -19.59391 -18.05748 -17.08331 -16.66942 -15.98847 -15.86713 -14.99125 -14.68672 -14.33034 -14.06808 -14.01906 -13.64812 -13.38280 -13.31982 -13.26174 -12.84959 -12.47592 -12.39048 -11.98287 -11.82429 -11.73065 -11.64232 -11.56206 -11.30346 -11.17795 -11.13548 -10.91134 -10.78848 -10.61755 -10.43078 -10.34251 -10.23713 -10.10186 -9.75270 -9.62294 -9.44757 -8.89813 -8.42191 -6.97306 -5.78623 -3.07271 2.70555 3.06164 3.41561 3.46483 3.47373 3.56737 4.33153 4.50798 4.56458 4.66612 4.69252 5.03384 5.10386 5.19490 5.20294 5.27095 5.33521 5.40527 5.49755 5.50790 5.55206 5.59956 5.65939 5.69532 5.74508 5.75898 5.78739 5.84150 5.95005 5.97772 6.00003 6.08711 6.12253 6.16641 6.20168 6.32677 6.40804 6.44018 6.54826 6.65959 6.81942 6.92955 7.05812 7.58019 7.66900 8.31067 8.39695 9.51011 10.08718 10.43601 11.43842 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.004063 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.875526 B = 6890.085422 C = 7307.616083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.048 4.048 3 C -0.145 4.145 4 C -0.148 4.148 5 C 0.554 3.446 6 O -0.546 6.546 7 N -0.600 5.600 8 C 0.099 3.901 9 C -0.152 4.152 10 C 0.184 3.816 11 H 0.047 0.953 12 N -0.721 5.721 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.109 4.109 22 H 0.068 0.932 23 C -0.136 4.136 24 C 0.119 3.881 25 C -0.166 4.166 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 10.072 -14.284 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.151 4.151 5 C 0.342 3.658 6 O -0.424 6.424 7 N -0.332 5.332 8 C -0.024 4.024 9 C -0.194 4.194 10 C 0.074 3.926 11 H 0.065 0.935 12 N -0.361 5.361 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.581 5.581 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.129 4.129 22 H 0.086 0.914 23 C -0.194 4.194 24 C -0.004 4.004 25 C -0.203 4.203 26 C -0.184 4.184 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.103 10.439 -13.988 19.243 hybrid contribution -0.815 -0.796 0.172 1.152 sum 7.288 9.644 -13.816 18.358 Atomic orbital electron populations 1.22199 0.94697 1.02184 1.02498 1.20588 0.95906 0.96149 0.94062 1.21791 1.01366 0.95260 1.01780 1.21438 1.02862 0.96021 0.94785 1.19436 0.80415 0.81082 0.84885 1.90656 1.53267 1.34206 1.64242 1.48125 1.18894 1.47210 1.18928 1.22239 0.92786 0.91150 0.96188 1.22706 1.01648 0.96708 0.98295 1.20190 0.94023 0.89312 0.89097 0.93513 1.42402 1.16383 1.36173 1.41129 1.19171 0.91793 1.10810 1.15209 0.91319 1.24713 0.98029 0.99276 0.98750 1.69646 1.34796 1.29472 1.24158 0.86308 0.84082 0.78935 0.77083 1.21329 1.21757 1.21318 1.21733 0.99650 0.96122 0.95405 0.91385 1.21655 0.99754 1.01556 0.96397 1.21713 1.00632 0.96167 0.81843 1.23219 1.01632 0.91143 1.04261 1.23004 0.89959 1.01633 1.03773 0.92401 0.91842 0.91850 0.90362 0.92411 0.92667 0.92364 0.91715 0.89115 0.90687 0.92320 0.78249 0.93477 0.93065 0.90766 0.93867 0.91691 0.89542 0.87896 0.87840 0.88064 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 7.56 37.16 0.28 -1.18 16 2 C -0.05 -0.46 2.74 -90.62 -0.25 -0.71 16 3 C -0.14 -1.45 9.00 37.16 0.33 -1.12 16 4 C -0.15 -1.69 0.77 -155.66 -0.12 -1.81 16 5 C 0.55 8.15 5.42 -10.99 -0.06 8.09 16 6 O -0.55 -9.78 16.31 5.56 0.09 -9.69 16 7 N -0.60 -8.51 2.72 -172.77 -0.47 -8.98 16 8 C 0.10 1.29 3.88 -3.71 -0.01 1.28 16 9 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 10 C 0.18 3.44 2.19 -67.89 -0.15 3.30 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 N -0.72 -17.13 4.41 -53.39 -0.24 -17.37 16 13 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 14 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 17 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 23 C -0.14 -2.23 9.02 37.15 0.34 -1.89 16 24 C 0.12 1.77 5.71 -3.71 -0.02 1.75 16 25 C -0.17 -1.69 7.88 -26.70 -0.21 -1.90 16 26 C -0.15 -1.53 9.93 -26.70 -0.27 -1.79 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 6.75 -51.93 -0.35 0.19 16 29 H 0.06 0.68 5.54 -51.92 -0.29 0.39 16 30 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.71 7.39 -51.93 -0.38 0.32 16 34 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 35 H 0.09 1.03 3.02 -51.93 -0.16 0.87 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.38 9.88 7.50 -40.82 -0.31 9.57 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.35 7.03 -51.93 -0.37 0.98 16 45 H 0.10 1.21 8.01 -51.93 -0.42 0.79 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -30.18 365.15 -8.66 -38.84 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.50 Total: 9.19 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.75 Total: -7.56 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.02 Total: -53.13 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.18 -8.66 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036166845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.281 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds