Wall clock time and date at job start Fri Apr 10 2020 20:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47072 * 2 1 4 4 C 1.53001 * 109.46871 * 119.99671 * 2 1 3 5 5 C 1.50699 * 115.55224 * 299.73014 * 4 2 1 6 6 O 1.21281 * 120.00231 * 267.24157 * 5 4 2 7 7 N 1.34782 * 119.99857 * 87.23896 * 5 4 2 8 8 C 1.46927 * 120.62791 * 355.75115 * 7 5 4 9 9 C 1.53195 * 108.77215 * 126.41384 * 8 7 5 10 10 C 1.53035 * 109.31274 * 54.63443 * 9 8 7 11 11 H 1.09001 * 109.46104 * 178.62797 * 10 9 8 12 12 N 1.46497 * 109.46063 * 58.65534 * 10 9 8 13 13 C 1.36937 * 120.00042 * 85.00267 * 12 10 9 14 14 H 1.08004 * 120.00336 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99828 * 179.97438 * 13 12 10 16 16 N 1.31608 * 120.00261 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99654 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47454 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46953 * 120.00100 * 17 15 13 20 20 H 1.48501 * 109.47169 * 240.00095 * 17 15 13 21 21 C 1.53040 * 109.54115 * 298.63167 * 10 9 8 22 22 H 1.09007 * 109.49983 * 301.41704 * 21 10 9 23 23 C 1.53000 * 109.50162 * 181.31484 * 21 10 9 24 24 C 1.46926 * 120.62998 * 175.77439 * 7 5 4 25 25 C 1.53000 * 117.49606 * 85.40575 * 4 2 1 26 26 C 1.53003 * 117.49528 * 154.06015 * 4 2 1 27 27 H 1.09003 * 109.47565 * 294.51994 * 1 2 3 28 28 H 1.09005 * 109.46974 * 54.51899 * 1 2 3 29 29 H 1.08999 * 109.47565 * 174.51838 * 1 2 3 30 30 H 1.08992 * 109.47090 * 239.99704 * 2 1 3 31 31 H 1.08995 * 109.47070 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47197 * 299.99767 * 3 2 1 33 33 H 1.09006 * 109.47240 * 59.99740 * 3 2 1 34 34 H 1.08997 * 109.58970 * 6.63054 * 8 7 5 35 35 H 1.08993 * 109.58915 * 246.19970 * 8 7 5 36 36 H 1.09000 * 109.49644 * 174.58651 * 9 8 7 37 37 H 1.08996 * 109.49919 * 294.68393 * 9 8 7 38 38 H 0.97003 * 120.00127 * 264.99608 * 12 10 9 39 39 H 0.97000 * 120.00757 * 180.02562 * 16 15 13 40 40 H 1.09007 * 109.46629 * 60.00304 * 23 21 10 41 41 H 1.08999 * 109.47066 * 180.02562 * 23 21 10 42 42 H 1.09000 * 109.47308 * 300.00338 * 23 21 10 43 43 H 1.08991 * 109.58345 * 113.80237 * 24 7 5 44 44 H 1.09000 * 109.70112 * 353.44569 * 24 7 5 45 45 H 1.09003 * 117.49629 * 215.00006 * 25 4 2 46 46 H 1.08995 * 117.50148 * 0.02562 * 25 4 2 47 47 H 1.08992 * 117.49997 * 359.97438 * 26 4 2 48 48 H 1.09005 * 117.49547 * 144.97446 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6209 -0.1174 2.5649 6 8 2.3365 0.6918 3.1162 7 7 0.4507 -0.4768 3.1290 8 6 -0.4696 -1.3842 2.4303 9 6 -0.8052 -2.5563 3.3579 10 6 -1.3431 -2.0142 4.6841 11 1 -1.6056 -2.8467 5.3369 12 7 -2.5333 -1.1984 4.4311 13 6 -3.7621 -1.7938 4.3269 14 1 -3.8538 -2.8649 4.4308 15 6 -4.8899 -1.0206 4.0876 16 7 -4.7783 0.2847 3.9615 17 14 -6.5659 -1.8329 3.9448 18 1 -6.4220 -3.3000 4.1243 19 1 -7.4687 -1.2927 4.9928 20 1 -7.1397 -1.5517 2.6043 21 6 -0.2707 -1.1560 5.3590 22 1 0.6241 -1.7560 5.5251 23 6 -0.7976 -0.6414 6.7000 24 6 0.0710 0.0320 4.4541 25 6 2.1729 -2.2439 1.1811 26 6 3.4261 -1.3650 1.1770 27 1 -0.3634 0.4265 0.9350 28 1 -0.3633 0.5965 -0.8369 29 1 -0.3634 -1.0229 -0.0982 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.0054 -1.7600 1.5241 35 1 -1.3836 -0.8498 2.1715 36 1 -1.5610 -3.1864 2.8891 37 1 0.0945 -3.1431 3.5429 38 1 -2.4510 -0.2364 4.3374 39 1 -5.5664 0.8251 3.7947 40 1 -1.0433 -1.4871 7.3425 41 1 -0.0336 -0.0299 7.1800 42 1 -1.6914 -0.0404 6.5328 43 1 -0.7989 0.6819 4.3603 44 1 0.9011 0.5922 4.8843 45 1 1.9572 -2.8090 2.0879 46 1 1.8975 -2.7318 0.2462 47 1 3.9744 -1.2750 0.2394 48 1 4.0350 -1.3514 2.0810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036166846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:15 Heat of formation + Delta-G solvation = -8.110418 kcal Electronic energy + Delta-G solvation = -26091.323621 eV Core-core repulsion = 22760.911671 eV Total energy + Delta-G solvation = -3330.411950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64545 -38.22076 -36.83870 -34.19865 -33.42312 -32.75266 -31.38003 -29.17005 -27.36397 -26.48220 -25.24356 -23.65094 -23.10291 -22.45992 -21.67567 -21.37143 -18.85878 -17.65691 -17.35488 -16.46669 -15.84016 -15.75979 -14.71993 -14.62600 -14.33083 -14.07466 -13.96836 -13.61597 -13.27255 -13.20557 -13.10882 -12.75872 -12.50391 -12.21170 -11.99164 -11.68113 -11.62899 -11.50828 -11.33654 -11.18694 -11.13575 -10.96005 -10.91922 -10.71266 -10.50973 -10.46177 -10.18619 -10.16042 -9.98385 -9.82243 -9.55310 -9.29307 -8.92518 -8.15807 -6.97634 -5.79775 -3.07931 2.87032 3.23738 3.40282 3.46620 3.48551 3.67067 4.45134 4.56636 4.64641 4.75315 4.84053 5.18549 5.25959 5.30107 5.34661 5.37361 5.42349 5.52785 5.57855 5.62163 5.69944 5.73758 5.77362 5.80007 5.86778 5.94304 5.96358 5.99050 6.02084 6.08764 6.12436 6.12817 6.27242 6.32297 6.36383 6.42404 6.44817 6.51425 6.67013 6.70943 6.78631 6.95111 7.04411 7.68376 7.80165 8.38724 8.48442 9.50498 10.07614 10.42730 11.42748 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.005072 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.753608 B = 5519.224452 C = 6103.979081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.048 4.048 3 C -0.145 4.145 4 C -0.143 4.143 5 C 0.552 3.448 6 O -0.551 6.551 7 N -0.594 5.594 8 C 0.107 3.893 9 C -0.151 4.151 10 C 0.179 3.821 11 H 0.049 0.951 12 N -0.718 5.718 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.903 3.097 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.107 4.107 22 H 0.064 0.936 23 C -0.137 4.137 24 C 0.118 3.882 25 C -0.166 4.166 26 C -0.148 4.148 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.726 -3.709 -6.152 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.146 4.146 5 C 0.339 3.661 6 O -0.429 6.429 7 N -0.325 5.325 8 C -0.015 4.015 9 C -0.193 4.193 10 C 0.068 3.932 11 H 0.067 0.933 12 N -0.360 5.360 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.581 5.581 17 Si 0.734 3.266 18 H -0.207 1.207 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.127 4.127 22 H 0.082 0.918 23 C -0.195 4.195 24 C -0.004 4.004 25 C -0.203 4.203 26 C -0.185 4.185 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.921 -3.383 -5.845 15.473 hybrid contribution -1.117 -0.198 -0.149 1.144 sum 12.804 -3.582 -5.994 14.584 Atomic orbital electron populations 1.22200 0.94226 1.02223 1.02960 1.20593 0.96169 0.96076 0.93825 1.21790 1.01085 0.95357 1.01961 1.21438 1.02361 0.95800 0.95048 1.19407 0.80573 0.81259 0.84854 1.90643 1.53648 1.34348 1.64274 1.48084 1.18483 1.47100 1.18880 1.22098 0.93379 0.91040 0.94942 1.22557 0.99774 0.97183 0.99748 1.20209 0.87043 0.93264 0.92663 0.93270 1.42473 1.01524 1.06240 1.85795 1.19260 0.84597 0.92024 1.40810 0.91245 1.24690 0.97697 0.95416 1.02949 1.69651 1.28586 1.03547 1.56269 0.86184 0.84879 0.78312 0.77195 1.20660 1.22007 1.22000 1.21696 0.98568 0.96959 0.95520 0.91804 1.21666 1.01273 1.01137 0.95415 1.21638 1.00784 0.96207 0.81803 1.23173 1.01693 0.91471 1.03945 1.22993 0.90034 1.01892 1.03617 0.91445 0.92417 0.91935 0.90573 0.92577 0.92645 0.92253 0.89833 0.89841 0.90881 0.93526 0.78110 0.93592 0.92844 0.93828 0.91035 0.90744 0.90006 0.88193 0.87952 0.88157 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 7.56 37.16 0.28 -1.70 16 2 C -0.05 -0.55 2.74 -90.62 -0.25 -0.80 16 3 C -0.14 -1.75 9.00 37.16 0.33 -1.42 16 4 C -0.14 -1.82 0.77 -155.66 -0.12 -1.94 16 5 C 0.55 8.99 5.42 -10.98 -0.06 8.93 16 6 O -0.55 -10.67 16.32 5.56 0.09 -10.58 16 7 N -0.59 -9.66 2.72 -172.77 -0.47 -10.13 16 8 C 0.11 1.69 3.62 -3.71 -0.01 1.68 16 9 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16 10 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 N -0.72 -16.31 3.64 -53.39 -0.19 -16.51 16 13 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 14 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 17 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C -0.11 -1.77 2.67 -90.50 -0.24 -2.01 16 22 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 23 C -0.14 -2.22 9.05 37.16 0.34 -1.88 16 24 C 0.12 2.03 5.40 -3.71 -0.02 2.01 16 25 C -0.17 -1.76 7.88 -26.70 -0.21 -1.97 16 26 C -0.15 -1.61 9.93 -26.69 -0.27 -1.88 16 27 H 0.07 1.01 5.56 -51.93 -0.29 0.72 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.73 6.73 -51.93 -0.35 0.38 16 30 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.87 7.39 -51.93 -0.38 0.48 16 34 H 0.08 1.13 3.02 -51.93 -0.16 0.97 16 35 H 0.08 1.56 7.14 -51.93 -0.37 1.19 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.38 9.41 5.93 -40.82 -0.24 9.17 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 43 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 44 H 0.08 1.43 7.04 -51.93 -0.37 1.06 16 45 H 0.10 1.12 8.01 -51.93 -0.42 0.70 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -29.17 361.23 -8.57 -37.74 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.34 Total: 10.73 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.80 Total: -7.12 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.06 Total: -52.84 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.17 -8.57 -37.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036166846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.631 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds