Wall clock time and date at job start Fri Apr 10 2020 20:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 C 1.53005 * 109.47095 * 119.99843 * 2 1 3 5 5 C 1.50692 * 115.55095 * 295.82839 * 4 2 1 6 6 O 1.21276 * 120.00201 * 95.62086 * 5 4 2 7 7 N 1.34786 * 119.99930 * 275.62000 * 5 4 2 8 8 C 1.46928 * 120.62943 * 354.26282 * 7 5 4 9 9 C 1.53187 * 108.77335 * 233.58313 * 8 7 5 10 10 C 1.53038 * 109.31614 * 305.36838 * 9 8 7 11 11 H 1.09000 * 109.44921 * 181.38422 * 10 9 8 12 12 N 1.46500 * 109.45811 * 301.34526 * 10 9 8 13 13 C 1.36944 * 119.99956 * 275.07058 * 12 10 9 14 14 H 1.07995 * 119.99643 * 359.97438 * 13 12 10 15 15 C 1.38815 * 120.00012 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 119.99799 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47616 * 269.99921 * 17 15 13 19 19 H 1.48505 * 109.47444 * 30.00519 * 17 15 13 20 20 H 1.48505 * 109.47129 * 149.99973 * 17 15 13 21 21 C 1.53034 * 109.53787 * 61.36420 * 10 9 8 22 22 H 1.08998 * 109.50123 * 58.59233 * 21 10 9 23 23 C 1.53006 * 109.49740 * 178.68601 * 21 10 9 24 24 C 1.46921 * 120.63036 * 174.23655 * 7 5 4 25 25 C 1.53005 * 117.51345 * 81.52991 * 4 2 1 26 26 C 1.52998 * 117.49456 * 150.15624 * 4 2 1 27 27 H 1.09005 * 109.46837 * 295.20209 * 1 2 3 28 28 H 1.09002 * 109.47112 * 55.19014 * 1 2 3 29 29 H 1.08994 * 109.47324 * 175.20005 * 1 2 3 30 30 H 1.09000 * 109.47119 * 240.00281 * 2 1 3 31 31 H 1.08998 * 109.47680 * 59.99883 * 3 2 1 32 32 H 1.09004 * 109.47576 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47185 * 300.00343 * 3 2 1 34 34 H 1.08995 * 109.58575 * 353.37259 * 8 7 5 35 35 H 1.08998 * 109.58387 * 113.65799 * 8 7 5 36 36 H 1.09002 * 109.49465 * 185.41353 * 9 8 7 37 37 H 1.09003 * 109.49412 * 65.32142 * 9 8 7 38 38 H 0.96996 * 120.00168 * 95.06323 * 12 10 9 39 39 H 0.96999 * 119.99493 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46716 * 59.99974 * 23 21 10 41 41 H 1.08999 * 109.47256 * 180.02562 * 23 21 10 42 42 H 1.09004 * 109.47011 * 300.00058 * 23 21 10 43 43 H 1.09005 * 109.58647 * 6.63268 * 24 7 5 44 44 H 1.08995 * 109.58983 * 246.20403 * 24 7 5 45 45 H 1.08997 * 117.49429 * 214.97023 * 25 4 2 46 46 H 1.08992 * 117.49997 * 359.97438 * 25 4 2 47 47 H 1.09000 * 117.50318 * 359.97438 * 26 4 2 48 48 H 1.09005 * 117.49528 * 145.00010 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6982 -0.0665 2.5628 6 8 0.7228 -0.4293 3.1856 7 7 2.4765 0.9223 3.0456 8 6 3.7283 1.2879 2.3687 9 6 4.8711 1.2430 3.3877 10 6 4.5195 2.1327 4.5823 11 1 5.3419 2.1217 5.2975 12 7 4.2934 3.5042 4.1195 13 6 5.3532 4.3570 3.9619 14 1 6.3555 4.0187 4.1791 15 6 5.1390 5.6568 3.5239 16 7 6.1575 6.4766 3.3729 17 14 3.4052 6.2421 3.1489 18 1 3.0897 5.9739 1.7228 19 1 2.4400 5.5174 4.0141 20 1 3.3073 7.7004 3.4117 21 6 3.2504 1.6064 5.2563 22 1 3.4097 0.5775 5.5789 23 6 2.9181 2.4770 6.4699 24 6 2.0891 1.6554 4.2585 25 6 2.0871 -2.2501 1.2131 26 6 3.3853 -1.4429 1.1485 27 1 -0.3633 0.4376 0.9299 28 1 -0.3633 0.5867 -0.8438 29 1 -0.3633 -1.0240 -0.0860 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 3.9284 0.5808 1.5638 35 1 3.6413 2.2939 1.9582 36 1 5.7880 1.6046 2.9222 37 1 5.0152 0.2175 3.7278 38 1 3.3932 3.8081 3.9246 39 1 6.0078 7.3847 3.0665 40 1 2.7575 3.5054 6.1461 41 1 2.0144 2.1015 6.9499 42 1 3.7459 2.4441 7.1783 43 1 1.2077 1.1907 4.7005 44 1 1.8693 2.6923 4.0042 45 1 1.8709 -2.7823 2.1394 46 1 1.7544 -2.7424 0.2993 47 1 3.9068 -1.4043 0.1922 48 1 4.0232 -1.4441 2.0325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036166848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:18 Heat of formation + Delta-G solvation = -4.887859 kcal Electronic energy + Delta-G solvation = -26213.893062 eV Core-core repulsion = 22883.620853 eV Total energy + Delta-G solvation = -3330.272209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76295 -38.39382 -36.95193 -34.35189 -33.50412 -32.83276 -31.51490 -29.76054 -27.43435 -26.61783 -25.50450 -23.56234 -23.01380 -22.56042 -21.72789 -21.45704 -19.01123 -17.96284 -17.67321 -16.57295 -15.97613 -15.85227 -14.90451 -14.65803 -14.43372 -14.23355 -13.96272 -13.64270 -13.52941 -13.30642 -13.13641 -12.90500 -12.58468 -12.32530 -12.18470 -11.81435 -11.73420 -11.61229 -11.54758 -11.40132 -11.30127 -11.05667 -11.02004 -10.86197 -10.66466 -10.54080 -10.27086 -10.23143 -10.07804 -9.86243 -9.57537 -9.40250 -8.96222 -8.31645 -7.29849 -5.80956 -3.15908 2.73709 3.09967 3.32011 3.34875 3.41748 3.57992 4.36218 4.53422 4.54415 4.67016 4.75689 5.07492 5.13323 5.17784 5.20819 5.25930 5.32736 5.36646 5.46482 5.53474 5.59930 5.62883 5.64054 5.66547 5.74783 5.78543 5.85355 5.88759 5.90444 5.94926 5.95975 6.03101 6.08709 6.21495 6.25723 6.30412 6.31796 6.37501 6.50001 6.58306 6.66994 6.75125 6.90755 7.64763 7.95760 8.34695 8.38311 9.16666 9.89369 10.09433 11.37528 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.005698 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.933681 B = 4913.195353 C = 5403.251721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C -0.158 4.158 4 C -0.146 4.146 5 C 0.553 3.447 6 O -0.549 6.549 7 N -0.598 5.598 8 C 0.106 3.894 9 C -0.151 4.151 10 C 0.185 3.815 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.239 4.239 14 H 0.090 0.910 15 C 0.007 3.993 16 N -0.933 5.933 17 Si 0.877 3.123 18 H -0.284 1.284 19 H -0.278 1.278 20 H -0.291 1.291 21 C -0.111 4.111 22 H 0.070 0.930 23 C -0.138 4.138 24 C 0.117 3.883 25 C -0.146 4.146 26 C -0.166 4.166 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 -15.427 -4.936 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.215 4.215 4 C -0.149 4.149 5 C 0.341 3.659 6 O -0.427 6.427 7 N -0.329 5.329 8 C -0.016 4.016 9 C -0.192 4.192 10 C 0.075 3.925 11 H 0.077 0.923 12 N -0.387 5.387 13 C -0.369 4.369 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.707 3.293 18 H -0.211 1.211 19 H -0.204 1.204 20 H -0.218 1.218 21 C -0.131 4.131 22 H 0.089 0.911 23 C -0.196 4.196 24 C -0.006 4.006 25 C -0.184 4.184 26 C -0.203 4.203 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.757 -15.471 -4.597 17.907 hybrid contribution -1.066 0.707 -0.336 1.323 sum -8.823 -14.764 -4.933 17.893 Atomic orbital electron populations 1.21798 0.94547 1.01826 1.02089 1.20582 0.96106 0.96040 0.93858 1.22120 1.01864 0.95164 1.02386 1.21453 1.03099 0.95373 0.94940 1.19418 0.82391 0.78994 0.85090 1.90645 1.28649 1.63430 1.59961 1.48105 1.23001 1.34595 1.27234 1.22061 0.82568 1.01675 0.95303 1.22517 0.98402 0.99328 0.98907 1.20174 0.94474 0.84798 0.93044 0.92308 1.42833 1.06090 1.08593 1.81149 1.19055 0.88580 0.91835 1.37450 0.89182 1.24621 0.96241 0.96333 1.01657 1.69689 1.28840 1.06567 1.53008 0.86683 0.86067 0.78228 0.78303 1.21117 1.20435 1.21760 1.21741 0.96130 0.99722 0.95479 0.91143 1.21681 1.00588 1.00579 0.96762 1.21641 0.98031 0.96090 0.84804 1.22985 1.00278 0.91387 1.03739 1.23190 0.90298 1.02817 1.04042 0.92309 0.92586 0.92578 0.90377 0.92125 0.91606 0.92368 0.89636 0.90385 0.90259 0.93114 0.80620 0.93094 0.91661 0.93591 0.92353 0.89606 0.91627 0.88390 0.88098 0.87769 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.12 37.16 0.34 -1.29 16 2 C -0.05 -0.52 2.75 -90.62 -0.25 -0.76 16 3 C -0.16 -1.90 7.47 37.16 0.28 -1.63 16 4 C -0.15 -1.75 0.76 -155.66 -0.12 -1.87 16 5 C 0.55 8.51 5.43 -10.99 -0.06 8.45 16 6 O -0.55 -10.09 16.28 5.56 0.09 -10.00 16 7 N -0.60 -9.13 2.49 -172.78 -0.43 -9.56 16 8 C 0.11 1.57 3.62 -3.71 -0.01 1.55 16 9 C -0.15 -2.35 5.78 -26.62 -0.15 -2.50 16 10 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 11 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 12 N -0.74 -15.99 3.45 -53.39 -0.18 -16.18 16 13 C -0.24 -6.28 10.41 -15.05 -0.16 -6.43 16 14 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 15 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 16 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 17 Si 0.88 21.43 27.74 -169.99 -4.71 16.71 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 C -0.11 -1.72 2.67 -90.50 -0.24 -1.96 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 23 C -0.14 -2.10 9.05 37.16 0.34 -1.77 16 24 C 0.12 1.88 5.43 -3.71 -0.02 1.86 16 25 C -0.15 -1.51 9.92 -26.73 -0.27 -1.77 16 26 C -0.17 -1.66 7.63 -26.73 -0.20 -1.86 16 27 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.06 0.86 6.49 -51.93 -0.34 0.52 16 32 H 0.06 0.77 6.25 -51.93 -0.32 0.45 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.08 3.43 -51.93 -0.18 0.90 16 35 H 0.08 1.33 7.07 -51.93 -0.37 0.96 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.36 7.83 3.78 -40.82 -0.15 7.68 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 44 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.10 1.05 7.85 -51.93 -0.41 0.65 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.33 358.24 -8.19 -38.52 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.33 Total: 9.45 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.80 Total: -6.78 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.16 Total: -53.30 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.33 -8.19 -38.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036166848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.631 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds