Wall clock time and date at job start Fri Apr 10 2020 20:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.53003 * 109.47147 * 120.00314 * 2 1 3 5 5 C 1.50700 * 115.54910 * 29.48498 * 4 2 1 6 6 O 1.21286 * 119.99774 * 270.07693 * 5 4 2 7 7 N 1.34769 * 120.00030 * 90.07632 * 5 4 2 8 8 C 1.46927 * 120.63126 * 354.44938 * 7 5 4 9 9 C 1.53195 * 108.77444 * 233.58151 * 8 7 5 10 10 C 1.53038 * 109.31304 * 305.36508 * 9 8 7 11 11 H 1.08995 * 109.45844 * 301.35724 * 10 9 8 12 12 N 1.46498 * 109.45913 * 181.38314 * 10 9 8 13 13 C 1.36939 * 119.99895 * 85.00030 * 12 10 9 14 14 H 1.07997 * 119.99933 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99827 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99687 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47547 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47148 * 120.00121 * 17 15 13 20 20 H 1.48507 * 109.47149 * 239.99628 * 17 15 13 21 21 C 1.53042 * 109.53948 * 61.36376 * 10 9 8 22 22 H 1.09001 * 109.49437 * 58.61893 * 21 10 9 23 23 C 1.52999 * 109.49692 * 178.68052 * 21 10 9 24 24 C 1.46925 * 120.63153 * 174.16312 * 7 5 4 25 25 C 1.52994 * 117.49940 * 175.15985 * 4 2 1 26 26 C 1.52997 * 60.03606 * 107.47365 * 25 4 2 27 27 H 1.09001 * 109.47547 * 184.85536 * 1 2 3 28 28 H 1.09004 * 109.47271 * 304.85477 * 1 2 3 29 29 H 1.09000 * 109.47444 * 64.85096 * 1 2 3 30 30 H 1.08996 * 109.46911 * 240.00257 * 2 1 3 31 31 H 1.09000 * 109.47221 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47476 * 300.00497 * 3 2 1 33 33 H 1.09004 * 109.46759 * 60.00187 * 3 2 1 34 34 H 1.08997 * 109.58361 * 353.37267 * 8 7 5 35 35 H 1.08999 * 109.59006 * 113.79795 * 8 7 5 36 36 H 1.09004 * 109.49175 * 65.31513 * 9 8 7 37 37 H 1.09001 * 109.49767 * 185.41041 * 9 8 7 38 38 H 0.97006 * 120.00538 * 265.00212 * 12 10 9 39 39 H 0.97004 * 119.99967 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46996 * 60.00372 * 23 21 10 41 41 H 1.09006 * 109.47025 * 179.97438 * 23 21 10 42 42 H 1.08997 * 109.47255 * 300.00015 * 23 21 10 43 43 H 1.08998 * 109.59003 * 246.20472 * 24 7 5 44 44 H 1.09004 * 109.58766 * 6.63039 * 24 7 5 45 45 H 1.09001 * 117.49775 * 214.98102 * 25 4 2 46 46 H 1.09001 * 117.50018 * 359.96513 * 25 4 2 47 47 H 1.09000 * 117.49896 * 107.49844 * 26 25 4 48 48 H 1.08992 * 117.49819 * 252.52358 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1408 -1.8046 1.7869 6 8 0.2907 -1.5345 2.6087 7 7 1.2814 -3.0733 1.3546 8 6 2.2222 -3.3958 0.2731 9 6 1.4714 -4.1597 -0.8221 10 6 0.7800 -5.3782 -0.2062 11 1 1.5251 -6.0177 0.2670 12 7 0.0882 -6.1295 -1.2565 13 6 0.7710 -7.0560 -1.9986 14 1 1.8196 -7.2325 -1.8098 15 6 0.1156 -7.7675 -2.9941 16 7 -1.1622 -7.5520 -3.2246 17 14 1.0473 -9.0308 -4.0068 18 1 2.4607 -9.0832 -3.5544 19 1 0.4209 -10.3657 -3.8309 20 1 1.0009 -8.6474 -5.4408 21 6 -0.2344 -4.9157 0.8422 22 1 -0.9658 -4.2565 0.3746 23 6 -0.9483 -6.1327 1.4338 24 6 0.5013 -4.1612 1.9601 25 6 3.5504 -0.9281 1.3784 26 6 2.8416 0.1004 2.2619 27 1 -0.3634 -1.0240 0.0870 28 1 -0.3634 0.5873 0.8433 29 1 -0.3634 0.4367 -0.9302 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 2.6335 -2.4748 -0.1400 35 1 3.0291 -4.0159 0.6635 36 1 0.7241 -3.5071 -1.2738 37 1 2.1768 -4.4886 -1.5852 38 1 -0.8535 -5.9707 -1.4264 39 1 -1.6201 -8.0489 -3.9205 40 1 -0.2166 -6.7910 1.9022 41 1 -1.6704 -5.8028 2.1808 42 1 -1.4662 -6.6713 0.6403 43 1 1.1707 -4.8425 2.4852 44 1 -0.2233 -3.7455 2.6603 45 1 3.8938 -1.8476 1.8526 46 1 4.1808 -0.5508 0.5732 47 1 2.7186 -0.1424 3.3174 48 1 3.0053 1.1544 2.0377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036166849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:23 Heat of formation + Delta-G solvation = -12.174795 kcal Electronic energy + Delta-G solvation = -25438.620502 eV Core-core repulsion = 22108.032307 eV Total energy + Delta-G solvation = -3330.588194 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71929 -38.33647 -37.01601 -34.55603 -33.26074 -32.72120 -31.44604 -29.30716 -27.72491 -26.51644 -25.19309 -23.93454 -23.06348 -22.37340 -21.64043 -20.83697 -19.55333 -18.23982 -17.09300 -16.62275 -16.22464 -15.76244 -14.98812 -14.82016 -14.41205 -14.25471 -13.94909 -13.71418 -13.30696 -13.04008 -12.99555 -12.80971 -12.46338 -12.28503 -12.25280 -11.90209 -11.73876 -11.55476 -11.47171 -11.33845 -11.19851 -11.13331 -10.94755 -10.80166 -10.60484 -10.48893 -10.37137 -10.17237 -10.07022 -9.75061 -9.61497 -9.47216 -8.90877 -8.41513 -6.96822 -5.78567 -3.07077 2.70763 3.05647 3.41028 3.46769 3.49051 3.52939 4.36317 4.49076 4.56866 4.65916 4.69252 4.97718 5.12730 5.14480 5.22813 5.27045 5.39655 5.41809 5.42420 5.53026 5.54369 5.61022 5.65503 5.69597 5.71894 5.76376 5.80262 5.82592 5.91371 5.98898 6.01932 6.09194 6.13537 6.16367 6.29312 6.32704 6.41195 6.44618 6.55939 6.67182 6.82546 6.93795 7.06767 7.58161 7.68125 8.31184 8.39696 9.51220 10.09057 10.43918 11.44030 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.004029 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.323681 B = 6948.487979 C = 7394.144399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.147 4.147 4 C -0.146 4.146 5 C 0.555 3.445 6 O -0.545 6.545 7 N -0.602 5.602 8 C 0.108 3.892 9 C -0.151 4.151 10 C 0.184 3.816 11 H 0.047 0.953 12 N -0.721 5.721 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.904 3.096 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.108 4.108 22 H 0.069 0.931 23 C -0.136 4.136 24 C 0.119 3.881 25 C -0.167 4.167 26 C -0.151 4.151 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.375 15.084 9.193 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.205 4.205 4 C -0.149 4.149 5 C 0.342 3.658 6 O -0.423 6.423 7 N -0.334 5.334 8 C -0.016 4.016 9 C -0.192 4.192 10 C 0.074 3.926 11 H 0.065 0.935 12 N -0.361 5.361 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.735 3.265 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.220 1.220 21 C -0.128 4.128 22 H 0.087 0.913 23 C -0.194 4.194 24 C -0.004 4.004 25 C -0.204 4.204 26 C -0.188 4.188 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.036 15.069 9.547 19.565 hybrid contribution 0.206 -0.782 -0.858 1.179 sum 8.242 14.287 8.688 18.642 Atomic orbital electron populations 1.21852 0.94244 1.02509 1.01819 1.20538 0.96429 0.95455 0.94433 1.21958 1.00817 0.95544 1.02139 1.21520 0.93092 0.99980 1.00276 1.19443 0.83208 0.82250 0.80856 1.90662 1.35216 1.81814 1.34609 1.48122 1.41861 1.06736 1.36699 1.21912 0.91479 1.00327 0.87834 1.22678 1.00279 0.98917 0.97332 1.20191 0.92800 0.90888 0.88749 0.93511 1.42419 1.10484 1.44581 1.38615 1.19262 0.93823 1.12690 1.11051 0.91205 1.24719 0.95913 1.00440 0.99773 1.69670 1.08577 1.44702 1.35072 0.86166 0.78797 0.81379 0.80124 1.20604 1.21927 1.21952 1.21804 0.98123 0.97014 0.95906 0.91292 1.21662 0.99763 0.97168 1.00806 1.21803 0.94966 0.87839 0.95758 1.23170 0.92781 1.01408 1.03069 1.23185 1.01249 0.97783 0.96628 0.92450 0.92156 0.92437 0.90299 0.92477 0.92273 0.92098 0.89972 0.91859 0.92241 0.90675 0.78236 0.93585 0.93104 0.93866 0.90769 0.91682 0.89487 0.88348 0.87863 0.88646 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.48 37.16 0.31 -1.48 16 2 C -0.05 -0.52 3.03 -90.62 -0.27 -0.80 16 3 C -0.15 -1.21 7.77 37.16 0.29 -0.92 16 4 C -0.15 -1.65 1.18 -155.62 -0.18 -1.84 16 5 C 0.55 8.17 4.91 -10.99 -0.05 8.11 16 6 O -0.55 -9.79 16.32 5.55 0.09 -9.70 16 7 N -0.60 -8.60 2.97 -172.50 -0.51 -9.11 16 8 C 0.11 1.42 5.59 -3.71 -0.02 1.40 16 9 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 10 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 N -0.72 -17.22 4.41 -53.39 -0.24 -17.45 16 13 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 17 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C -0.11 -1.81 2.47 -90.27 -0.22 -2.03 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 23 C -0.14 -2.24 9.03 37.16 0.34 -1.91 16 24 C 0.12 1.77 5.75 -3.49 -0.02 1.75 16 25 C -0.17 -1.51 7.76 -26.74 -0.21 -1.72 16 26 C -0.15 -1.46 9.21 -26.69 -0.25 -1.70 16 27 H 0.06 0.84 6.92 -51.93 -0.36 0.48 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 31 H 0.06 0.40 7.17 -51.93 -0.37 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.50 7.22 -51.93 -0.38 0.13 16 34 H 0.08 0.94 4.85 -51.93 -0.25 0.69 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.38 9.94 7.51 -40.82 -0.31 9.63 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 45 H 0.10 0.91 7.93 -51.93 -0.41 0.50 16 46 H 0.10 0.77 7.92 -51.93 -0.41 0.35 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.11 0.86 5.82 -51.93 -0.30 0.56 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -30.39 367.23 -8.81 -39.20 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.55 Total: 8.89 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.84 Total: -7.39 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.02 Total: -53.43 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.39 -8.81 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036166849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.023 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds