Wall clock time and date at job start Fri Apr 10 2020 20:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.53003 * 109.47147 * 120.00314 * 2 1 3 5 5 C 1.50700 * 115.54910 * 29.48498 * 4 2 1 6 6 O 1.21286 * 119.99774 * 270.07693 * 5 4 2 7 7 N 1.34769 * 120.00030 * 90.07632 * 5 4 2 8 8 C 1.46927 * 120.63126 * 354.44938 * 7 5 4 9 9 C 1.53195 * 108.77444 * 233.58151 * 8 7 5 10 10 C 1.53038 * 109.31304 * 305.36508 * 9 8 7 11 11 H 1.08995 * 109.45844 * 301.35724 * 10 9 8 12 12 N 1.46498 * 109.45913 * 181.38314 * 10 9 8 13 13 C 1.36939 * 119.99895 * 85.00030 * 12 10 9 14 14 H 1.07997 * 119.99933 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99827 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99687 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47547 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47148 * 120.00121 * 17 15 13 20 20 H 1.48507 * 109.47149 * 239.99628 * 17 15 13 21 21 C 1.53042 * 109.53948 * 61.36376 * 10 9 8 22 22 H 1.09001 * 109.49437 * 58.61893 * 21 10 9 23 23 C 1.52999 * 109.49692 * 178.68052 * 21 10 9 24 24 C 1.46925 * 120.63153 * 174.16312 * 7 5 4 25 25 C 1.52994 * 117.49940 * 175.15985 * 4 2 1 26 26 C 1.52997 * 60.03606 * 107.47365 * 25 4 2 27 27 H 1.09001 * 109.47547 * 184.85536 * 1 2 3 28 28 H 1.09004 * 109.47271 * 304.85477 * 1 2 3 29 29 H 1.09000 * 109.47444 * 64.85096 * 1 2 3 30 30 H 1.08996 * 109.46911 * 240.00257 * 2 1 3 31 31 H 1.09000 * 109.47221 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47476 * 300.00497 * 3 2 1 33 33 H 1.09004 * 109.46759 * 60.00187 * 3 2 1 34 34 H 1.08997 * 109.58361 * 353.37267 * 8 7 5 35 35 H 1.08999 * 109.59006 * 113.79795 * 8 7 5 36 36 H 1.09004 * 109.49175 * 65.31513 * 9 8 7 37 37 H 1.09001 * 109.49767 * 185.41041 * 9 8 7 38 38 H 0.97006 * 120.00538 * 265.00212 * 12 10 9 39 39 H 0.97004 * 119.99967 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46996 * 60.00372 * 23 21 10 41 41 H 1.09006 * 109.47025 * 179.97438 * 23 21 10 42 42 H 1.08997 * 109.47255 * 300.00015 * 23 21 10 43 43 H 1.08998 * 109.59003 * 246.20472 * 24 7 5 44 44 H 1.09004 * 109.58766 * 6.63039 * 24 7 5 45 45 H 1.09001 * 117.49775 * 214.98102 * 25 4 2 46 46 H 1.09001 * 117.50018 * 359.96513 * 25 4 2 47 47 H 1.09000 * 117.49896 * 107.49844 * 26 25 4 48 48 H 1.08992 * 117.49819 * 252.52358 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1408 -1.8046 1.7869 6 8 0.2907 -1.5345 2.6087 7 7 1.2814 -3.0733 1.3546 8 6 2.2222 -3.3958 0.2731 9 6 1.4714 -4.1597 -0.8221 10 6 0.7800 -5.3782 -0.2062 11 1 1.5251 -6.0177 0.2670 12 7 0.0882 -6.1295 -1.2565 13 6 0.7710 -7.0560 -1.9986 14 1 1.8196 -7.2325 -1.8098 15 6 0.1156 -7.7675 -2.9941 16 7 -1.1622 -7.5520 -3.2246 17 14 1.0473 -9.0308 -4.0068 18 1 2.4607 -9.0832 -3.5544 19 1 0.4209 -10.3657 -3.8309 20 1 1.0009 -8.6474 -5.4408 21 6 -0.2344 -4.9157 0.8422 22 1 -0.9658 -4.2565 0.3746 23 6 -0.9483 -6.1327 1.4338 24 6 0.5013 -4.1612 1.9601 25 6 3.5504 -0.9281 1.3784 26 6 2.8416 0.1004 2.2619 27 1 -0.3634 -1.0240 0.0870 28 1 -0.3634 0.5873 0.8433 29 1 -0.3634 0.4367 -0.9302 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 2.6335 -2.4748 -0.1400 35 1 3.0291 -4.0159 0.6635 36 1 0.7241 -3.5071 -1.2738 37 1 2.1768 -4.4886 -1.5852 38 1 -0.8535 -5.9707 -1.4264 39 1 -1.6201 -8.0489 -3.9205 40 1 -0.2166 -6.7910 1.9022 41 1 -1.6704 -5.8028 2.1808 42 1 -1.4662 -6.6713 0.6403 43 1 1.1707 -4.8425 2.4852 44 1 -0.2233 -3.7455 2.6603 45 1 3.8938 -1.8476 1.8526 46 1 4.1808 -0.5508 0.5732 47 1 2.7186 -0.1424 3.3174 48 1 3.0053 1.1544 2.0377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036166849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:21 Heat of formation + Delta-G solvation = -29.402389 kcal Electronic energy + Delta-G solvation = -25439.367546 eV Core-core repulsion = 22108.032307 eV Total energy + Delta-G solvation = -3331.335239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.78951 -39.53899 -38.17441 -36.14778 -34.42049 -33.97357 -33.03753 -31.01562 -28.63835 -27.66151 -26.77979 -25.18865 -24.26598 -23.37040 -22.99534 -21.90035 -20.94386 -19.36114 -18.98750 -17.66839 -17.28649 -16.81513 -16.72909 -15.78496 -15.68574 -15.56135 -15.35400 -15.16168 -14.89291 -14.33496 -14.01611 -13.89903 -13.67770 -13.58341 -13.13902 -13.07800 -13.00494 -12.88074 -12.74863 -12.73244 -12.48460 -12.28125 -12.12938 -12.07597 -12.01230 -11.95005 -11.85925 -11.65126 -11.27866 -11.16707 -10.91262 -10.87400 -10.52446 -9.64747 -8.95948 -7.90503 -5.18225 1.49155 1.49509 1.58308 1.59218 1.97583 2.58550 2.74141 3.41775 3.45537 3.61811 3.77518 3.83751 3.88774 3.93387 4.03182 4.10028 4.21863 4.31339 4.36215 4.39288 4.46801 4.55934 4.68464 4.74303 4.76300 4.77308 4.80091 4.81912 4.88213 4.95014 4.97719 5.00213 5.01210 5.03452 5.18052 5.22384 5.24134 5.31387 5.35894 5.39206 5.43263 5.52063 5.57262 5.64885 6.30751 6.44261 7.16938 7.37306 8.13076 8.36596 9.33423 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.004029 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.323681 B = 6948.487979 C = 7394.144399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C -0.143 4.143 4 C -0.167 4.167 5 C 0.551 3.449 6 O -0.585 6.585 7 N -0.604 5.604 8 C 0.117 3.883 9 C -0.141 4.141 10 C 0.180 3.820 11 H 0.049 0.951 12 N -0.732 5.732 13 C -0.229 4.229 14 H 0.079 0.921 15 C -0.076 4.076 16 N -0.972 5.972 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.298 1.298 20 H -0.297 1.297 21 C -0.098 4.098 22 H 0.047 0.953 23 C -0.130 4.130 24 C 0.125 3.875 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.369 0.631 39 H 0.248 0.752 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.083 0.917 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 16.280 9.651 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.170 4.170 5 C 0.341 3.659 6 O -0.465 6.465 7 N -0.335 5.335 8 C -0.005 4.005 9 C -0.182 4.182 10 C 0.072 3.928 11 H 0.067 0.933 12 N -0.371 5.371 13 C -0.361 4.361 14 H 0.097 0.903 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.226 1.226 20 H -0.225 1.225 21 C -0.118 4.118 22 H 0.066 0.934 23 C -0.188 4.188 24 C 0.002 3.998 25 C -0.184 4.184 26 C -0.184 4.184 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.201 0.799 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.147 0.853 47 H 0.101 0.899 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.209 16.285 10.032 22.170 hybrid contribution -0.804 -1.116 -0.919 1.655 sum 10.405 15.169 9.112 20.528 Atomic orbital electron populations 1.21822 0.96194 1.00236 1.01915 1.20553 0.94712 0.97150 0.94148 1.21930 1.02030 0.93569 1.02435 1.21499 0.94127 0.99934 1.01405 1.20084 0.82980 0.82721 0.80100 1.90635 1.37019 1.82376 1.36509 1.48205 1.41818 1.06712 1.36789 1.21918 0.90943 1.01286 0.86372 1.22467 0.99741 0.97785 0.98181 1.20417 0.93049 0.91301 0.88079 0.93276 1.42607 1.10007 1.44957 1.39516 1.19648 0.94145 1.12010 1.10272 0.90309 1.25480 0.96726 1.02986 1.01620 1.69833 1.10243 1.46259 1.36008 0.85152 0.78395 0.78555 0.78159 1.18726 1.22594 1.22492 1.21663 0.97355 0.96858 0.95966 0.93434 1.21576 1.00170 0.96888 1.00123 1.21679 0.95216 0.88165 0.94727 1.23314 0.90745 1.01229 1.03123 1.23281 1.00313 0.99067 0.95773 0.95668 0.93157 0.91382 0.89916 0.90444 0.91619 0.92253 0.87602 0.89715 0.94026 0.91318 0.79908 0.94321 0.92136 0.91951 0.94087 0.89740 0.90287 0.88218 0.85274 0.89859 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.48 71.98 0.61 -2.89 16 2 C -0.05 -0.89 3.03 -10.79 -0.03 -0.92 16 3 C -0.14 -1.88 7.77 71.98 0.56 -1.32 16 4 C -0.17 -3.40 1.18 -52.90 -0.06 -3.46 16 5 C 0.55 15.73 4.91 87.66 0.43 16.16 16 6 O -0.58 -21.16 16.32 -3.05 -0.05 -21.21 16 7 N -0.60 -16.46 2.97 -818.07 -2.43 -18.89 16 8 C 0.12 2.80 5.59 86.36 0.48 3.28 16 9 C -0.14 -4.56 5.66 30.67 0.17 -4.38 16 10 C 0.18 6.73 2.19 45.02 0.10 6.83 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 12 N -0.73 -35.62 4.41 -322.82 -1.42 -37.04 16 13 C -0.23 -12.19 9.93 84.03 0.83 -11.36 16 14 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 16 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 17 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 C -0.10 -3.31 2.47 -10.57 -0.03 -3.34 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.13 -4.31 9.03 71.98 0.65 -3.66 16 24 C 0.13 3.61 5.75 86.51 0.50 4.11 16 25 C -0.15 -2.06 7.76 30.59 0.24 -1.83 16 26 C -0.15 -2.41 9.21 30.62 0.28 -2.12 16 27 H 0.02 0.75 6.92 -2.39 -0.02 0.73 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.49 7.66 -2.39 -0.02 1.47 16 31 H 0.08 0.73 7.17 -2.39 -0.02 0.71 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.81 7.22 -2.38 -0.02 0.80 16 34 H 0.11 2.07 4.85 -2.39 -0.01 2.06 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.37 19.94 7.51 -92.70 -0.70 19.24 16 39 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.04 1.63 7.36 -2.39 -0.02 1.61 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 2.45 7.00 -2.39 -0.02 2.44 16 45 H 0.10 1.42 7.93 -2.39 -0.02 1.40 16 46 H 0.13 1.20 7.92 -2.39 -0.02 1.18 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 48 H 0.13 1.56 5.82 -2.39 -0.01 1.54 16 Total: -1.00 -67.77 367.23 3.84 -63.92 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.23 Total: 33.45 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.20 Total: -8.72 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -3.57 Total: -114.82 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.77 3.84 -63.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036166849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.520 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds