Wall clock time and date at job start Fri Apr 10 2020 20:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46812 * 2 1 4 4 C 1.52998 * 109.47112 * 119.99634 * 2 1 3 5 5 H 1.09000 * 109.47475 * 300.00268 * 4 2 1 6 6 C 1.53004 * 109.46983 * 60.00470 * 4 2 1 7 7 C 1.50700 * 109.47110 * 179.97438 * 4 2 1 8 8 O 1.21283 * 120.00400 * 334.70803 * 7 4 2 9 9 N 1.34776 * 120.00056 * 154.70144 * 7 4 2 10 10 C 1.46942 * 120.44423 * 184.97388 * 9 7 4 11 11 C 1.53589 * 108.54876 * 125.74741 * 10 9 7 12 12 H 1.08999 * 110.60404 * 172.13151 * 11 10 9 13 13 C 1.53374 * 108.68683 * 294.32922 * 11 10 9 14 14 C 1.53006 * 109.25539 * 60.26778 * 13 11 10 15 15 C 1.53008 * 109.80052 * 60.57635 * 14 13 11 16 16 C 1.53361 * 109.27312 * 299.43642 * 15 14 13 17 17 H 1.08998 * 111.08929 * 177.79930 * 16 15 14 18 18 C 1.46956 * 120.44098 * 4.95356 * 9 7 4 19 19 N 1.47570 * 107.98642 * 56.34451 * 16 15 14 20 20 C 1.36935 * 121.61100 * 122.24941 * 19 16 15 21 21 H 1.07999 * 119.99722 * 26.71026 * 20 19 16 22 22 C 1.38811 * 120.00391 * 206.70308 * 20 19 16 23 23 N 1.31623 * 119.99845 * 17.46249 * 22 20 19 24 24 Si 1.86803 * 120.00434 * 197.46690 * 22 20 19 25 25 H 1.48499 * 109.46955 * 59.99699 * 24 22 20 26 26 H 1.48488 * 109.47269 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46681 * 299.99819 * 24 22 20 28 28 H 1.09000 * 109.47170 * 299.99910 * 1 2 3 29 29 H 1.08997 * 109.47285 * 60.00636 * 1 2 3 30 30 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47170 * 240.00090 * 2 1 3 32 32 H 1.08999 * 109.46895 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46676 * 299.99737 * 3 2 1 34 34 H 1.09000 * 109.47180 * 60.00096 * 3 2 1 35 35 H 1.09007 * 109.47005 * 174.28453 * 6 4 2 36 36 H 1.09000 * 109.46930 * 294.27772 * 6 4 2 37 37 H 1.08994 * 109.47451 * 54.28280 * 6 4 2 38 38 H 1.08997 * 109.62575 * 6.02781 * 10 9 7 39 39 H 1.08999 * 109.62794 * 245.46048 * 10 9 7 40 40 H 1.09004 * 109.50798 * 180.19848 * 13 11 10 41 41 H 1.09000 * 109.50506 * 300.33098 * 13 11 10 42 42 H 1.09007 * 109.41732 * 300.47719 * 14 13 11 43 43 H 1.08997 * 109.36479 * 180.64639 * 14 13 11 44 44 H 1.09001 * 109.50640 * 179.49760 * 15 14 13 45 45 H 1.08999 * 109.53603 * 59.39584 * 15 14 13 46 46 H 1.09003 * 109.62210 * 114.55312 * 18 9 7 47 47 H 1.08999 * 109.62585 * 353.97828 * 18 9 7 48 48 H 0.96996 * 120.00325 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2493 7 6 3.5470 -0.7217 1.2490 8 8 4.1533 -0.6359 0.2021 9 7 4.2211 -0.8174 2.4121 10 6 5.6864 -0.7096 2.4345 11 6 6.0803 0.3888 3.4332 12 1 7.1601 0.4038 3.5806 13 6 5.5768 1.7375 2.9042 14 6 4.0540 1.6880 2.7643 15 6 3.4165 1.4205 4.1293 16 6 3.9116 0.0709 4.6635 17 1 3.5049 -0.1318 5.6542 18 6 3.5004 -1.0305 3.6750 19 7 5.3861 0.1106 4.7054 20 6 6.0770 -0.0998 5.8689 21 1 5.6420 -0.7003 6.6541 22 6 7.3365 0.4584 6.0390 23 7 7.7274 1.4487 5.2650 24 14 8.4767 -0.1957 7.3662 25 1 8.7522 -1.6336 7.1175 26 1 9.7519 0.5646 7.3420 27 1 7.8319 -0.0377 8.6946 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.9746 -2.7062 2.0837 36 1 0.4449 -2.1654 1.3517 37 1 1.8074 -2.6472 0.3126 38 1 6.0494 -0.4480 1.4406 39 1 6.1187 -1.6602 2.7466 40 1 5.8526 2.5281 3.6020 41 1 6.0255 1.9372 1.9311 42 1 3.7793 0.8906 2.0736 43 1 3.6954 2.6418 2.3775 44 1 2.3317 1.3951 4.0256 45 1 3.6972 2.2121 4.8240 46 1 3.7608 -2.0063 4.0849 47 1 2.4263 -0.9799 3.4966 48 1 8.6076 1.8386 5.3835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039936637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:28 Heat of formation + Delta-G solvation = -2.460952 kcal Electronic energy + Delta-G solvation = -26939.116353 eV Core-core repulsion = 23608.949383 eV Total energy + Delta-G solvation = -3330.166970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.86870 -38.13827 -35.94058 -34.01160 -32.72891 -31.94513 -30.75646 -30.21767 -27.48523 -26.62829 -25.56476 -24.34881 -23.35890 -21.54864 -21.31036 -20.50751 -18.67629 -18.23548 -17.29911 -16.20899 -15.59551 -14.89255 -14.76580 -14.39054 -14.31176 -13.91905 -13.57376 -13.41967 -13.39025 -12.89774 -12.60463 -12.49268 -12.27729 -12.18989 -12.06658 -11.98745 -11.73002 -11.54032 -11.31451 -11.16094 -10.92584 -10.86218 -10.69579 -10.63884 -10.42213 -10.33309 -10.14060 -9.99575 -9.93337 -9.54414 -9.41730 -9.07348 -8.50957 -7.81197 -6.62322 -5.82484 -3.26248 3.02630 3.35339 3.41960 3.42334 3.50376 4.43232 4.66891 4.75902 4.93271 5.11128 5.23930 5.31628 5.37599 5.44548 5.54601 5.64771 5.68795 5.69895 5.72610 5.81022 5.85900 5.87251 5.89865 5.92396 5.96337 6.05404 6.09414 6.20195 6.23202 6.33648 6.44121 6.46242 6.48452 6.51470 6.55247 6.62376 6.77413 6.93296 6.95048 7.09066 7.17243 7.53350 7.63195 7.73722 7.97506 8.36062 8.63183 9.12572 9.74914 10.35953 11.23566 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028925 B = 0.005064 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.789035 B = 5527.852512 C = 5660.310539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.111 4.111 5 H 0.093 0.907 6 C -0.142 4.142 7 C 0.520 3.480 8 O -0.554 6.554 9 N -0.590 5.590 10 C 0.092 3.908 11 C 0.176 3.824 12 H 0.119 0.881 13 C -0.112 4.112 14 C -0.142 4.142 15 C -0.122 4.122 16 C 0.150 3.850 17 H 0.077 0.923 18 C 0.092 3.908 19 N -0.578 5.578 20 C -0.250 4.250 21 H 0.067 0.933 22 C 0.004 3.996 23 N -0.897 5.897 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.284 1.284 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.029 0.971 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 -3.437 -6.714 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.209 4.209 4 C -0.132 4.132 5 H 0.111 0.889 6 C -0.200 4.200 7 C 0.310 3.690 8 O -0.433 6.433 9 N -0.322 5.322 10 C -0.032 4.032 11 C 0.069 3.931 12 H 0.136 0.864 13 C -0.151 4.151 14 C -0.179 4.179 15 C -0.162 4.162 16 C 0.042 3.958 17 H 0.095 0.905 18 C -0.032 4.032 19 N -0.299 5.299 20 C -0.380 4.380 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.541 5.541 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.305 -3.314 -7.200 14.637 hybrid contribution 0.646 -0.108 0.901 1.113 sum -11.660 -3.422 -6.299 13.687 Atomic orbital electron populations 1.21898 0.95164 1.01656 1.01729 1.20929 0.94981 0.96474 0.97183 1.21948 1.02532 0.95303 1.01156 1.21476 0.92671 0.98431 1.00666 0.88918 1.21786 1.01312 0.94251 1.02627 1.20245 0.89713 0.75693 0.83372 1.90641 1.70295 1.51254 1.31145 1.48191 1.08100 1.69569 1.06377 1.22505 0.78350 1.00889 1.01407 1.21223 0.99783 0.89169 0.82939 0.86371 1.21765 0.93754 1.00598 0.98951 1.22211 0.97467 1.00490 0.97780 1.21950 0.97059 0.99470 0.97687 1.21221 0.87093 0.91687 0.95808 0.90500 1.22449 0.95330 1.00322 0.85138 1.44408 0.98300 1.82408 1.04788 1.19105 0.99181 1.24853 0.94823 0.91537 1.24991 0.99841 0.96103 0.98545 1.69952 1.19972 1.23180 1.41009 0.86367 0.80328 0.78458 0.81569 1.21102 1.21683 1.21012 0.92697 0.92675 0.92493 0.90349 0.91467 0.92992 0.92930 0.92167 0.91449 0.92093 0.90357 0.92439 0.91113 0.94623 0.89780 0.95179 0.94296 0.92311 0.91730 0.90783 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 2 C -0.08 -0.94 2.14 -90.62 -0.19 -1.14 16 3 C -0.15 -2.02 8.54 37.16 0.32 -1.70 16 4 C -0.11 -1.45 1.28 -91.77 -0.12 -1.56 16 5 H 0.09 1.16 6.46 -51.93 -0.34 0.82 16 6 C -0.14 -1.55 8.42 37.16 0.31 -1.23 16 7 C 0.52 8.82 3.52 -10.99 -0.04 8.78 16 8 O -0.55 -11.07 14.45 5.56 0.08 -10.99 16 9 N -0.59 -10.45 1.65 -172.24 -0.28 -10.73 16 10 C 0.09 1.85 5.87 -3.50 -0.02 1.83 16 11 C 0.18 3.98 2.67 -66.84 -0.18 3.80 16 12 H 0.12 3.06 5.76 -51.93 -0.30 2.76 16 13 C -0.11 -2.43 5.57 -26.53 -0.15 -2.58 16 14 C -0.14 -2.68 5.55 -26.72 -0.15 -2.83 16 15 C -0.12 -2.23 5.58 -26.54 -0.15 -2.38 16 16 C 0.15 2.85 3.62 -66.85 -0.24 2.61 16 17 H 0.08 1.42 8.01 -51.93 -0.42 1.01 16 18 C 0.09 1.49 5.28 -3.48 -0.02 1.47 16 19 N -0.58 -13.31 2.54 -155.43 -0.39 -13.71 16 20 C -0.25 -6.42 9.73 -15.06 -0.15 -6.56 16 21 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.10 5.01 -17.43 -0.09 0.02 16 23 N -0.90 -24.55 10.93 55.49 0.61 -23.94 16 24 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 31 H 0.08 1.06 7.87 -51.93 -0.41 0.65 16 32 H 0.07 1.09 6.09 -51.93 -0.32 0.77 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 36 H 0.07 0.58 6.75 -51.93 -0.35 0.23 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.61 7.01 -51.93 -0.36 1.25 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.74 8.05 -51.93 -0.42 1.33 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.51 1.57 -52.43 -0.08 1.43 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 0.98 5.12 -51.93 -0.27 0.71 16 48 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -28.32 344.58 -8.54 -36.86 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.18 Total: 3.98 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.53 Total: -2.53 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.07 Total: -48.38 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.32 -8.54 -36.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039936637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.399 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds