Wall clock time and date at job start Fri Apr 10 2020 20:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46976 * 2 1 4 4 C 1.52992 * 109.47035 * 120.00039 * 2 1 3 5 5 H 1.08996 * 109.47373 * 300.00038 * 4 2 1 6 6 C 1.53008 * 109.47035 * 180.02562 * 4 2 1 7 7 C 1.50702 * 109.47064 * 60.00303 * 4 2 1 8 8 O 1.21282 * 120.00393 * 14.31427 * 7 4 2 9 9 N 1.34778 * 119.99883 * 194.31701 * 7 4 2 10 10 C 1.46948 * 120.43992 * 4.05441 * 9 7 4 11 11 C 1.54068 * 108.29589 * 125.72735 * 10 9 7 12 12 H 1.09001 * 110.52022 * 172.87384 * 11 10 9 13 13 C 1.53371 * 108.83413 * 294.51029 * 11 10 9 14 14 C 1.53009 * 109.25306 * 60.25758 * 13 11 10 15 15 C 1.53008 * 109.79791 * 60.57676 * 14 13 11 16 16 C 1.53370 * 109.27791 * 299.44026 * 15 14 13 17 17 H 1.09001 * 110.59436 * 178.09717 * 16 15 14 18 18 C 1.46944 * 120.44101 * 184.33798 * 9 7 4 19 19 N 1.47569 * 107.70312 * 51.33558 * 11 10 9 20 20 C 1.36931 * 121.61305 * 120.36842 * 19 11 10 21 21 H 1.07998 * 120.00147 * 329.95155 * 20 19 11 22 22 C 1.38817 * 120.00078 * 149.94796 * 20 19 11 23 23 N 1.31619 * 119.99721 * 346.23154 * 22 20 19 24 24 Si 1.86798 * 119.99931 * 166.23414 * 22 20 19 25 25 H 1.48491 * 109.47209 * 94.32084 * 24 22 20 26 26 H 1.48500 * 109.46687 * 214.31980 * 24 22 20 27 27 H 1.48499 * 109.47112 * 334.31588 * 24 22 20 28 28 H 1.09000 * 109.47069 * 60.00201 * 1 2 3 29 29 H 1.08996 * 109.47070 * 299.99738 * 1 2 3 30 30 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47015 * 240.00686 * 2 1 3 32 32 H 1.09003 * 109.47113 * 59.99840 * 3 2 1 33 33 H 1.08996 * 109.47126 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47214 * 300.00282 * 3 2 1 35 35 H 1.09000 * 109.46797 * 189.54334 * 6 4 2 36 36 H 1.08994 * 109.46783 * 309.54098 * 6 4 2 37 37 H 1.09002 * 109.46808 * 69.54046 * 6 4 2 38 38 H 1.08999 * 109.62532 * 245.49231 * 10 9 7 39 39 H 1.08999 * 109.62644 * 6.05347 * 10 9 7 40 40 H 1.09005 * 109.50607 * 300.31877 * 13 11 10 41 41 H 1.09003 * 109.50665 * 180.19585 * 13 11 10 42 42 H 1.08994 * 109.41392 * 300.47759 * 14 13 11 43 43 H 1.08996 * 109.36088 * 180.64567 * 14 13 11 44 44 H 1.08998 * 109.50085 * 179.50109 * 15 14 13 45 45 H 1.09000 * 109.53425 * 59.40164 * 15 14 13 46 46 H 1.08998 * 109.62889 * 353.95932 * 18 9 7 47 47 H 1.09003 * 109.63294 * 114.34643 * 18 9 7 48 48 H 0.96994 * 119.99740 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 3.5701 -0.7207 1.2495 7 6 1.5377 -2.1421 1.2491 8 8 1.0679 -2.6192 0.2379 9 7 1.6106 -2.8826 2.3729 10 6 2.0953 -2.2880 3.6262 11 6 1.0326 -2.5244 4.7164 12 1 1.4077 -2.2095 5.6902 13 6 -0.2358 -1.7445 4.3488 14 6 -0.7611 -2.2421 3.0006 15 6 -1.1029 -3.7305 3.0949 16 6 0.1618 -4.5184 3.4581 17 1 -0.0646 -5.5794 3.5639 18 6 1.2122 -4.2970 2.3596 19 7 0.7000 -3.9621 4.7146 20 6 0.8821 -4.7424 5.8250 21 1 1.6693 -4.5083 6.5263 22 6 0.0548 -5.8343 6.0494 23 7 -1.0593 -5.9681 5.3614 24 14 0.5228 -7.1136 7.3276 25 1 -0.1303 -6.7840 8.6198 26 1 0.0735 -8.4542 6.8736 27 1 1.9971 -7.1196 7.5053 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 3.9335 -1.3749 2.0420 36 1 3.9337 -1.0796 0.2867 37 1 3.9330 0.2929 1.4201 38 1 3.0335 -2.7606 3.9168 39 1 2.2487 -1.2177 3.4883 40 1 -0.0024 -0.6820 4.2790 41 1 -0.9946 -1.9015 5.1155 42 1 0.0024 -2.0933 2.2371 43 1 -1.6562 -1.6810 2.7322 44 1 -1.4847 -4.0777 2.1348 45 1 -1.8599 -3.8826 3.8642 46 1 0.7851 -4.5479 1.3887 47 1 2.0829 -4.9245 2.5498 48 1 -1.6371 -6.7312 5.5179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039936638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:32 Heat of formation + Delta-G solvation = -2.922427 kcal Electronic energy + Delta-G solvation = -26849.978082 eV Core-core repulsion = 23519.791101 eV Total energy + Delta-G solvation = -3330.186982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.83151 -38.14975 -35.89567 -34.03501 -32.72426 -31.89860 -30.76746 -30.15570 -27.38743 -26.67251 -25.53803 -24.35408 -23.34605 -21.57213 -21.27482 -20.43584 -18.73859 -18.24672 -17.28110 -16.17468 -15.62122 -14.88303 -14.74851 -14.35636 -14.29322 -13.90478 -13.57936 -13.43912 -13.40723 -12.88822 -12.58383 -12.48037 -12.25620 -12.13077 -12.05634 -11.98484 -11.73762 -11.49645 -11.33643 -11.13669 -10.92594 -10.84873 -10.69920 -10.64451 -10.44342 -10.30832 -10.11064 -10.01530 -9.88475 -9.49970 -9.41025 -9.06095 -8.51199 -7.80532 -6.57175 -5.82166 -3.29936 3.03204 3.33964 3.41868 3.42629 3.50873 4.42936 4.67461 4.76194 4.93192 5.12266 5.25143 5.33330 5.36758 5.44032 5.54663 5.65376 5.69740 5.70489 5.73800 5.82500 5.86669 5.88881 5.90523 5.94450 5.96953 6.05941 6.10659 6.20668 6.23435 6.34288 6.44735 6.49325 6.50796 6.52947 6.58457 6.64591 6.79472 6.94827 6.97451 7.11593 7.19885 7.55103 7.65585 7.74643 7.98271 8.38466 8.64089 9.13730 9.74669 10.37679 11.23890 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.004971 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.507505 B = 5631.186603 C = 5802.337225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.110 4.110 5 H 0.092 0.908 6 C -0.143 4.143 7 C 0.519 3.481 8 O -0.552 6.552 9 N -0.590 5.590 10 C 0.093 3.907 11 C 0.151 3.849 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.140 4.140 15 C -0.111 4.111 16 C 0.179 3.821 17 H 0.115 0.885 18 C 0.091 3.909 19 N -0.577 5.577 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.006 3.994 23 N -0.897 5.897 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 11.783 -6.898 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.094 4.094 3 C -0.205 4.205 4 C -0.131 4.131 5 H 0.110 0.890 6 C -0.201 4.201 7 C 0.308 3.692 8 O -0.431 6.431 9 N -0.322 5.322 10 C -0.032 4.032 11 C 0.043 3.957 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.178 4.178 15 C -0.150 4.150 16 C 0.072 3.928 17 H 0.133 0.867 18 C -0.032 4.032 19 N -0.298 5.298 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.193 4.193 23 N -0.541 5.541 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.934 11.346 -7.368 14.773 hybrid contribution 0.011 -0.652 0.891 1.104 sum 5.945 10.694 -6.477 13.844 Atomic orbital electron populations 1.21951 0.94883 1.03393 1.00850 1.20905 0.96313 0.95090 0.97083 1.21901 1.00935 0.95960 1.01680 1.21436 0.97330 0.93762 1.00589 0.88951 1.21807 0.93149 1.02422 1.02679 1.20255 0.78203 0.87855 0.82854 1.90634 1.46315 1.73320 1.32839 1.48176 1.63105 1.11971 1.08923 1.22546 0.98314 0.97048 0.85269 1.21293 0.92102 0.86963 0.95347 0.90550 1.21958 0.99380 0.96806 0.98033 1.22139 1.00050 0.97366 0.98235 1.21758 0.99963 0.93792 0.99457 1.21121 0.88759 1.00164 0.82715 0.86731 1.22502 0.99498 0.79675 1.01548 1.44342 1.74807 1.01798 1.08895 1.19121 1.10268 1.07460 1.01228 0.91681 1.25096 0.94873 1.00771 0.98531 1.69939 1.11078 1.30114 1.42952 0.86283 0.78024 0.81211 0.81214 1.21533 1.21611 1.20484 0.93140 0.93284 0.90835 0.90523 0.92741 0.92539 0.92721 0.91951 0.92189 0.91537 0.91795 0.90857 0.94361 0.92314 0.89946 0.95312 0.94627 0.91065 0.90316 0.92458 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.88 37.16 0.33 -1.70 16 2 C -0.08 -0.91 2.11 -90.62 -0.19 -1.11 16 3 C -0.15 -1.38 8.85 37.16 0.33 -1.05 16 4 C -0.11 -1.41 1.46 -91.77 -0.13 -1.55 16 5 H 0.09 1.14 6.69 -51.93 -0.35 0.79 16 6 C -0.14 -1.54 8.25 37.16 0.31 -1.23 16 7 C 0.52 8.71 3.66 -10.98 -0.04 8.67 16 8 O -0.55 -10.89 13.70 5.56 0.08 -10.81 16 9 N -0.59 -10.34 1.64 -171.95 -0.28 -10.63 16 10 C 0.09 1.49 4.78 -3.24 -0.02 1.48 16 11 C 0.15 2.89 3.61 -66.60 -0.24 2.65 16 12 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 13 C -0.12 -2.28 5.59 -26.53 -0.15 -2.42 16 14 C -0.14 -2.72 5.55 -26.72 -0.15 -2.86 16 15 C -0.11 -2.44 5.54 -26.54 -0.15 -2.59 16 16 C 0.18 4.07 2.62 -66.84 -0.18 3.89 16 17 H 0.12 2.97 5.93 -51.93 -0.31 2.66 16 18 C 0.09 1.83 5.89 -3.49 -0.02 1.81 16 19 N -0.58 -13.34 2.53 -155.15 -0.39 -13.73 16 20 C -0.25 -6.45 9.73 -15.06 -0.15 -6.59 16 21 H 0.07 1.64 7.87 -52.49 -0.41 1.23 16 22 C 0.01 0.17 5.08 -17.43 -0.09 0.08 16 23 N -0.90 -24.58 10.77 55.49 0.60 -23.99 16 24 Si 0.90 20.89 29.58 -169.99 -5.03 15.86 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.19 6.05 -51.93 -0.31 0.88 16 31 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.47 6.65 -51.93 -0.35 0.13 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.69 6.87 -51.93 -0.36 0.34 16 36 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.07 0.57 6.97 -51.93 -0.36 0.21 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.97 5.22 -51.93 -0.27 0.70 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.54 2.51 -52.43 -0.13 1.40 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.78 7.89 -51.93 -0.41 1.37 16 46 H 0.08 1.61 6.98 -51.93 -0.36 1.25 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -28.24 344.59 -8.60 -36.84 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.24 Total: 3.80 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.53 Total: -2.53 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.08 Total: -48.34 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.24 -8.60 -36.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039936638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.915 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds