Wall clock time and date at job start Fri Apr 10 2020 20:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46990 * 2 1 4 4 C 1.52997 * 109.47613 * 120.00650 * 2 1 3 5 5 H 1.09004 * 109.46871 * 299.99826 * 4 2 1 6 6 C 1.53000 * 109.47109 * 59.99737 * 4 2 1 7 7 C 1.50695 * 109.47219 * 179.97438 * 4 2 1 8 8 O 1.21285 * 120.00246 * 342.83548 * 7 4 2 9 9 N 1.34976 * 120.00069 * 162.83768 * 7 4 2 10 10 C 1.44774 * 120.02780 * 185.55828 * 9 7 4 11 11 C 1.51406 * 113.23864 * 267.52528 * 10 9 7 12 12 C 1.51227 * 114.19818 * 296.00639 * 11 10 9 13 13 H 1.09704 * 110.71270 * 178.79103 * 12 11 10 14 14 C 1.54116 * 108.46460 * 300.74663 * 12 11 10 15 15 C 1.53983 * 104.81719 * 92.77031 * 14 12 11 16 16 C 1.52094 * 105.55185 * 11.46057 * 15 14 12 17 17 H 1.09400 * 108.30022 * 123.18029 * 16 15 14 18 18 C 1.49295 * 119.99269 * 5.12244 * 9 7 4 19 19 N 1.47742 * 109.53355 * 5.34696 * 16 15 14 20 20 C 1.37129 * 127.11361 * 158.99092 * 19 16 15 21 21 H 1.08002 * 120.00361 * 167.52970 * 20 19 16 22 22 C 1.38811 * 119.99933 * 347.51663 * 20 19 16 23 23 N 1.31623 * 120.00101 * 3.74729 * 22 20 19 24 24 Si 1.86803 * 120.00238 * 183.73927 * 22 20 19 25 25 H 1.48502 * 109.46931 * 90.00406 * 24 22 20 26 26 H 1.48503 * 109.47119 * 210.00501 * 24 22 20 27 27 H 1.48502 * 109.46790 * 330.00410 * 24 22 20 28 28 H 1.09004 * 109.46860 * 299.99518 * 1 2 3 29 29 H 1.08992 * 109.47582 * 59.99536 * 1 2 3 30 30 H 1.09006 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46860 * 240.00482 * 2 1 3 32 32 H 1.08996 * 109.47816 * 300.00655 * 3 2 1 33 33 H 1.08997 * 109.47097 * 60.00900 * 3 2 1 34 34 H 1.09003 * 109.46917 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.47180 * 64.09990 * 6 4 2 36 36 H 1.09004 * 109.47008 * 184.10080 * 6 4 2 37 37 H 1.09003 * 109.46962 * 304.09944 * 6 4 2 38 38 H 1.08888 * 109.20462 * 145.48039 * 10 9 7 39 39 H 1.09387 * 108.36973 * 27.94262 * 10 9 7 40 40 H 1.09157 * 108.83448 * 57.71660 * 11 10 9 41 41 H 1.09322 * 108.48732 * 174.86414 * 11 10 9 42 42 H 1.09353 * 110.60198 * 211.87942 * 14 12 11 43 43 H 1.09301 * 110.67249 * 333.53129 * 14 12 11 44 44 H 1.09061 * 110.64412 * 251.88551 * 15 14 12 45 45 H 1.09288 * 110.27140 * 130.38970 * 15 14 12 46 46 H 1.09133 * 109.49766 * 15.10108 * 18 9 7 47 47 H 1.09109 * 109.53367 * 255.39768 * 18 9 7 48 48 H 0.96999 * 120.00419 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5301 -2.1639 1.2490 7 6 3.5470 -0.7219 1.2487 8 8 4.1533 -0.4888 0.2244 9 7 4.2221 -0.9818 2.3882 10 6 5.6648 -0.8647 2.4183 11 6 6.3763 -2.1664 2.1156 12 6 6.1313 -3.2579 3.1333 13 1 6.6545 -4.1790 2.8479 14 6 6.6086 -2.7572 4.5105 15 6 5.3570 -2.1383 5.1598 16 6 4.1899 -2.5624 4.2816 17 1 3.4648 -3.0924 4.9062 18 6 3.4802 -1.3807 3.6208 19 7 4.6690 -3.4928 3.2388 20 6 3.9193 -4.3911 2.5235 21 1 4.3393 -4.8729 1.6530 22 6 2.6206 -4.6813 2.9186 23 7 2.0832 -4.0405 3.9350 24 14 1.6356 -5.9811 2.0077 25 1 1.8595 -7.3057 2.6407 26 1 0.1913 -5.6410 2.0690 27 1 2.0729 -6.0299 0.5894 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9565 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.9520 -2.6983 0.3980 36 1 1.8323 -2.6561 2.1734 37 1 0.4425 -2.1647 1.1756 38 1 5.9746 -0.5045 3.3981 39 1 5.9661 -0.1231 1.6728 40 1 6.0564 -2.5230 1.1348 41 1 7.4509 -1.9712 2.0680 42 1 6.9816 -3.5891 5.1143 43 1 7.3940 -2.0056 4.3969 44 1 5.4373 -1.0510 5.1901 45 1 5.2254 -2.5256 6.1733 46 1 2.4613 -1.6680 3.3557 47 1 3.4464 -0.5394 4.3147 48 1 1.1756 -4.2430 4.2109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045857497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:25 Heat of formation + Delta-G solvation = -13.203444 kcal Electronic energy + Delta-G solvation = -27211.540539 eV Core-core repulsion = 23880.907739 eV Total energy + Delta-G solvation = -3330.632800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.96398 -38.21953 -35.66120 -33.92882 -33.22893 -31.73934 -30.12993 -29.47044 -27.31891 -26.78515 -25.61288 -23.96364 -23.58149 -22.04372 -20.19101 -19.53111 -18.98780 -17.82485 -17.05493 -16.18408 -15.29229 -14.90043 -14.89208 -14.53165 -14.00501 -13.88055 -13.70174 -13.23225 -13.12167 -12.54486 -12.31779 -12.23798 -11.97222 -11.81588 -11.71816 -11.50395 -11.43561 -11.29198 -11.10681 -10.95567 -10.85525 -10.77643 -10.67333 -10.52909 -10.22157 -10.18180 -10.00615 -9.86025 -9.63615 -9.49076 -9.38236 -8.85043 -8.53428 -7.70150 -6.87348 -5.75370 -3.17444 3.34155 3.41282 3.43118 3.46640 3.91986 4.40941 5.10166 5.14766 5.29906 5.31621 5.34507 5.52347 5.61362 5.67629 5.71210 5.79996 5.85157 5.91180 5.92961 5.99249 6.02636 6.04994 6.14415 6.18589 6.21938 6.29026 6.30180 6.37803 6.41374 6.52748 6.53540 6.64645 6.66685 6.69322 6.72654 6.74184 6.84852 6.88174 7.08589 7.18558 7.43125 7.55651 7.64097 7.71916 8.25505 8.31118 9.05494 9.13876 9.71353 10.45274 11.26423 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.009192 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.230332 B = 3045.305776 C = 4471.781702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.096 4.096 5 H 0.080 0.920 6 C -0.172 4.172 7 C 0.528 3.472 8 O -0.567 6.567 9 N -0.583 5.583 10 C 0.133 3.867 11 C -0.143 4.143 12 C 0.154 3.846 13 H 0.055 0.945 14 C -0.125 4.125 15 C -0.126 4.126 16 C 0.136 3.864 17 H 0.128 0.872 18 C 0.102 3.898 19 N -0.576 5.576 20 C -0.195 4.195 21 H 0.073 0.927 22 C -0.004 4.004 23 N -0.921 5.921 24 Si 0.897 3.103 25 H -0.290 1.290 26 H -0.288 1.288 27 H -0.282 1.282 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.034 0.966 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 7.372 0.691 7.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.205 4.205 4 C -0.117 4.117 5 H 0.098 0.902 6 C -0.229 4.229 7 C 0.317 3.683 8 O -0.448 6.448 9 N -0.313 5.313 10 C 0.009 3.991 11 C -0.184 4.184 12 C 0.046 3.954 13 H 0.073 0.927 14 C -0.164 4.164 15 C -0.165 4.165 16 C 0.029 3.971 17 H 0.145 0.855 18 C -0.022 4.022 19 N -0.298 5.298 20 C -0.324 4.324 21 H 0.091 0.909 22 C -0.198 4.198 23 N -0.571 5.571 24 Si 0.727 3.273 25 H -0.217 1.217 26 H -0.214 1.214 27 H -0.208 1.208 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.123 0.877 47 H 0.052 0.948 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.412 7.351 0.153 7.487 hybrid contribution -0.492 -0.663 -0.516 0.974 sum 0.920 6.688 -0.363 6.760 Atomic orbital electron populations 1.21899 0.95519 1.01896 1.01076 1.20918 0.94763 0.95969 0.98067 1.21896 1.02491 0.95733 1.00430 1.21245 0.92307 0.99261 0.98923 0.90195 1.22363 0.99732 0.93577 1.07183 1.20500 0.89817 0.75240 0.82727 1.90557 1.70669 1.51614 1.31934 1.48000 1.05932 1.66020 1.11394 1.20406 0.81221 0.96801 1.00635 1.21922 0.97930 0.97135 1.01442 1.21052 0.87262 0.94750 0.92309 0.92657 1.22471 0.97057 0.99444 0.97431 1.22174 0.96243 0.98952 0.99114 1.21471 0.94891 0.89700 0.91046 0.85543 1.23231 0.98543 0.96051 0.84339 1.44801 1.00542 1.41163 1.43296 1.19017 0.94556 1.13838 1.04946 0.90873 1.24641 0.97300 0.99598 0.98286 1.69552 1.15047 1.43514 1.28995 0.86335 0.79645 0.82112 0.79173 1.21702 1.21390 1.20765 0.92960 0.93125 0.92213 0.90694 0.93407 0.93615 0.91469 0.93231 0.85414 0.93201 0.92089 0.92273 0.92489 0.93261 0.92582 0.92443 0.92846 0.92468 0.87732 0.94817 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.85 37.16 0.33 -1.70 16 2 C -0.08 -1.29 2.12 -90.62 -0.19 -1.48 16 3 C -0.15 -2.26 8.89 37.16 0.33 -1.93 16 4 C -0.10 -1.78 1.46 -91.78 -0.13 -1.91 16 5 H 0.08 1.40 7.37 -51.93 -0.38 1.01 16 6 C -0.17 -3.46 8.60 37.16 0.32 -3.14 16 7 C 0.53 11.01 6.24 -10.90 -0.07 10.94 16 8 O -0.57 -13.06 14.06 5.55 0.08 -12.98 16 9 N -0.58 -11.60 2.56 -173.50 -0.44 -12.04 16 10 C 0.13 2.46 4.97 -5.77 -0.03 2.43 16 11 C -0.14 -2.69 5.03 -28.43 -0.14 -2.83 16 12 C 0.15 3.00 3.82 -67.15 -0.26 2.74 16 13 H 0.06 1.10 8.20 -51.53 -0.42 0.68 16 14 C -0.13 -2.07 5.99 -25.64 -0.15 -2.22 16 15 C -0.13 -2.17 5.74 -26.68 -0.15 -2.32 16 16 C 0.14 2.81 2.29 -67.78 -0.16 2.65 16 17 H 0.13 3.00 5.62 -51.70 -0.29 2.71 16 18 C 0.10 2.00 5.32 -2.56 -0.01 1.99 16 19 N -0.58 -13.02 2.36 -156.15 -0.37 -13.38 16 20 C -0.20 -4.92 10.21 -14.97 -0.15 -5.07 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C 0.00 -0.11 3.66 -17.43 -0.06 -0.17 16 23 N -0.92 -22.67 8.26 55.49 0.46 -22.21 16 24 Si 0.90 20.76 29.56 -169.99 -5.02 15.73 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.84 6.34 -51.93 -0.33 0.51 16 31 H 0.07 1.36 7.92 -51.93 -0.41 0.95 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.17 6.16 -51.93 -0.32 0.85 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.13 2.84 2.37 -51.93 -0.12 2.72 16 37 H 0.05 0.91 6.22 -51.93 -0.32 0.58 16 38 H 0.06 1.01 5.62 -51.99 -0.29 0.72 16 39 H 0.06 1.11 7.37 -51.71 -0.38 0.73 16 40 H 0.06 1.24 8.16 -51.84 -0.42 0.82 16 41 H 0.05 0.79 8.14 -51.75 -0.42 0.37 16 42 H 0.06 0.90 8.17 -51.73 -0.42 0.47 16 43 H 0.06 0.83 7.67 -51.76 -0.40 0.43 16 44 H 0.05 0.83 6.52 -51.89 -0.34 0.49 16 45 H 0.06 0.94 8.17 -51.77 -0.42 0.52 16 46 H 0.10 2.22 3.44 -51.85 -0.18 2.04 16 47 H 0.03 0.60 7.87 -51.87 -0.41 0.19 16 48 H 0.25 6.22 8.31 -40.82 -0.34 5.88 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -26.34 339.49 -8.67 -35.01 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.95 Total: 6.80 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.54 Total: -2.03 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.35 Total: -47.64 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.34 -8.67 -35.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045857497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.806 kcal (2) G-P(sol) polarization free energy of solvation -26.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds