Wall clock time and date at job start Fri Apr 10 2020 20:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47321 * 2 1 4 4 C 1.52998 * 109.47115 * 120.00213 * 2 1 3 5 5 H 1.09001 * 109.46853 * 299.99921 * 4 2 1 6 6 C 1.52999 * 109.47115 * 180.02562 * 4 2 1 7 7 C 1.50700 * 109.47657 * 59.99931 * 4 2 1 8 8 O 1.21287 * 119.99553 * 25.01876 * 7 4 2 9 9 N 1.34835 * 120.00209 * 205.02191 * 7 4 2 10 10 C 1.44976 * 120.20805 * 175.30772 * 9 7 4 11 11 C 1.51571 * 112.75219 * 268.05487 * 10 9 7 12 12 C 1.51206 * 114.10021 * 294.87896 * 11 10 9 13 13 H 1.09694 * 110.72507 * 179.39811 * 12 11 10 14 14 C 1.54123 * 108.51959 * 301.41848 * 12 11 10 15 15 C 1.53999 * 104.77306 * 92.31939 * 14 12 11 16 16 C 1.52114 * 105.52711 * 11.77452 * 15 14 12 17 17 H 1.09428 * 108.23208 * 122.96235 * 16 15 14 18 18 C 1.49404 * 120.22147 * 354.84955 * 9 7 4 19 19 N 1.47737 * 109.52243 * 5.24011 * 16 15 14 20 20 C 1.37106 * 127.18457 * 158.76723 * 19 16 15 21 21 H 1.08005 * 119.99947 * 180.48891 * 20 19 16 22 22 C 1.38811 * 119.99996 * 0.48677 * 20 19 16 23 23 N 1.31618 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46934 * 60.00129 * 24 22 20 26 26 H 1.48495 * 109.47182 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47255 * 300.00369 * 24 22 20 28 28 H 1.08995 * 109.47038 * 299.99655 * 1 2 3 29 29 H 1.08998 * 109.47283 * 60.00191 * 1 2 3 30 30 H 1.09011 * 109.47197 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47196 * 239.99923 * 2 1 3 32 32 H 1.09001 * 109.47048 * 59.99833 * 3 2 1 33 33 H 1.08997 * 109.47653 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47055 * 300.00474 * 3 2 1 35 35 H 1.08998 * 109.47149 * 305.98234 * 6 4 2 36 36 H 1.09001 * 109.47300 * 65.98899 * 6 4 2 37 37 H 1.08999 * 109.46990 * 185.98392 * 6 4 2 38 38 H 1.09276 * 108.41015 * 28.26402 * 10 9 7 39 39 H 1.08760 * 109.26005 * 146.18953 * 10 9 7 40 40 H 1.09147 * 108.73889 * 56.49873 * 11 10 9 41 41 H 1.09261 * 108.44861 * 173.69278 * 11 10 9 42 42 H 1.09343 * 110.57718 * 211.36333 * 14 12 11 43 43 H 1.09281 * 110.71444 * 333.06149 * 14 12 11 44 44 H 1.09054 * 110.65403 * 252.21553 * 15 14 12 45 45 H 1.09273 * 110.28397 * 130.71041 * 15 14 12 46 46 H 1.09124 * 109.43014 * 255.52823 * 18 9 7 47 47 H 1.09099 * 109.48009 * 15.19929 * 18 9 7 48 48 H 0.96998 * 119.99893 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 1.5377 -2.1421 1.2493 8 8 1.2496 -2.6834 0.2028 9 7 1.4086 -2.8115 2.4126 10 6 0.8309 -4.1411 2.4288 11 6 -0.6670 -4.1267 2.6602 12 6 -1.0767 -3.6086 4.0204 13 1 -2.1687 -3.6121 4.1244 14 6 -0.4171 -4.4900 5.0990 15 6 0.9086 -3.7797 5.4299 16 6 0.8120 -2.4108 4.7736 17 1 0.9504 -1.6496 5.5474 18 6 1.8691 -2.1921 3.6918 19 7 -0.5345 -2.2364 4.1912 20 6 -1.1568 -1.0546 3.8818 21 1 -2.1530 -1.0619 3.4646 22 6 -0.5065 0.1514 4.1049 23 7 0.7076 0.1602 4.6128 24 14 -1.3541 1.7616 3.6827 25 1 -2.6096 1.8806 4.4669 26 1 -0.4544 2.8960 4.0127 27 1 -1.6721 1.7883 2.2324 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 3.9337 -1.1387 0.3109 36 1 3.9329 0.3014 1.3570 37 1 3.9333 -1.3246 2.0811 38 1 1.0291 -4.6153 1.4645 39 1 1.3107 -4.7312 3.2063 40 1 -1.1344 -3.5072 1.8927 41 1 -1.0441 -5.1459 2.5472 42 1 -1.0515 -4.5493 5.9876 43 1 -0.2290 -5.4955 4.7146 44 1 1.7548 -4.3375 5.0274 45 1 1.0207 -3.6715 6.5115 46 1 2.8090 -2.6527 4.0004 47 1 2.0253 -1.1227 3.5426 48 1 1.1622 1.0029 4.7683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045857498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:31 Heat of formation + Delta-G solvation = -16.365135 kcal Electronic energy + Delta-G solvation = -27447.427275 eV Core-core repulsion = 24116.657374 eV Total energy + Delta-G solvation = -3330.769901 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -39.89482 -38.19746 -35.56369 -33.84513 -33.10497 -31.71530 -30.24476 -29.40719 -27.26848 -26.63821 -25.68212 -23.82737 -23.74474 -22.01359 -20.12292 -19.48789 -18.92787 -17.88008 -17.00459 -16.04376 -15.33904 -14.89930 -14.78540 -14.34902 -13.94935 -13.93189 -13.80523 -13.12932 -12.84756 -12.61492 -12.39318 -12.18632 -11.87728 -11.79608 -11.66496 -11.59012 -11.45058 -11.25617 -11.11437 -11.01022 -10.87800 -10.75718 -10.72353 -10.41686 -10.19345 -10.12564 -9.99888 -9.77298 -9.62096 -9.46257 -9.42960 -8.81268 -8.60170 -7.62701 -6.89244 -5.76520 -3.12265 3.35550 3.40554 3.42799 3.53213 3.99469 4.43030 5.16015 5.23370 5.32932 5.37021 5.44342 5.51611 5.64412 5.68231 5.71474 5.79334 5.89173 5.92852 5.94114 6.04930 6.10245 6.14886 6.21331 6.26968 6.28901 6.30560 6.32604 6.41891 6.44558 6.49971 6.55094 6.57080 6.67066 6.68471 6.76543 6.85587 6.88045 6.95894 7.06087 7.08680 7.35112 7.48748 7.64077 7.72914 8.20781 8.38431 9.11723 9.16619 9.72798 10.44877 11.30976 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.009701 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.818175 B = 2885.692844 C = 3963.269963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.114 4.114 5 H 0.120 0.880 6 C -0.137 4.137 7 C 0.532 3.468 8 O -0.575 6.575 9 N -0.582 5.582 10 C 0.129 3.871 11 C -0.143 4.143 12 C 0.154 3.846 13 H 0.055 0.945 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.156 3.844 17 H 0.105 0.895 18 C 0.103 3.897 19 N -0.578 5.578 20 C -0.196 4.196 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.925 5.925 24 Si 0.899 3.101 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.282 1.282 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.123 0.877 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -3.829 -1.507 5.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.204 4.204 4 C -0.135 4.135 5 H 0.138 0.862 6 C -0.195 4.195 7 C 0.321 3.679 8 O -0.456 6.456 9 N -0.312 5.312 10 C 0.004 3.996 11 C -0.184 4.184 12 C 0.046 3.954 13 H 0.073 0.927 14 C -0.164 4.164 15 C -0.168 4.168 16 C 0.049 3.951 17 H 0.122 0.878 18 C -0.020 4.020 19 N -0.301 5.301 20 C -0.324 4.324 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.208 1.208 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.140 0.860 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.872 -3.843 -2.015 5.816 hybrid contribution -0.527 0.790 -0.157 0.963 sum 3.345 -3.052 -2.172 5.023 Atomic orbital electron populations 1.21875 0.94950 1.02612 1.01079 1.20848 0.96253 0.94900 0.97069 1.21886 1.00590 0.96371 1.01514 1.21463 0.96320 0.93974 1.01751 0.86215 1.21727 0.94155 1.02031 1.01537 1.20399 0.76780 0.87734 0.82942 1.90554 1.53246 1.69939 1.31842 1.48059 1.59215 1.16159 1.07771 1.20495 0.93523 0.84699 1.00834 1.21946 0.96529 0.99454 1.00426 1.21044 0.96282 0.86379 0.91681 0.92702 1.22472 0.97127 0.97897 0.98906 1.22228 0.96672 0.97942 0.99991 1.20991 0.85189 0.93872 0.95040 0.87787 1.23515 0.94684 1.00910 0.82926 1.44844 1.13166 0.99297 1.72770 1.18988 0.97855 0.82088 1.33478 0.90758 1.24529 0.96664 0.96876 1.02099 1.69689 1.12298 1.24598 1.50916 0.86403 0.78601 0.83674 0.78359 1.21490 1.21491 1.20841 0.92140 0.93934 0.91940 0.91274 0.92591 0.92764 0.93171 0.92978 0.91865 0.92551 0.92051 0.92030 0.92560 0.93268 0.92574 0.92339 0.92685 0.92510 0.95443 0.85968 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.91 37.16 0.33 -2.60 16 2 C -0.07 -1.31 2.14 -90.62 -0.19 -1.50 16 3 C -0.15 -2.27 8.84 37.16 0.33 -1.94 16 4 C -0.11 -2.19 1.47 -91.77 -0.13 -2.33 16 5 H 0.12 2.59 6.08 -51.93 -0.32 2.28 16 6 C -0.14 -2.20 8.51 37.16 0.32 -1.88 16 7 C 0.53 11.35 5.99 -10.96 -0.07 11.28 16 8 O -0.57 -13.47 14.51 5.55 0.08 -13.39 16 9 N -0.58 -11.85 2.57 -173.33 -0.44 -12.29 16 10 C 0.13 2.42 5.09 -5.58 -0.03 2.39 16 11 C -0.14 -2.69 5.03 -28.36 -0.14 -2.83 16 12 C 0.15 2.99 3.82 -67.13 -0.26 2.73 16 13 H 0.05 1.08 8.20 -51.54 -0.42 0.66 16 14 C -0.13 -2.06 5.99 -25.62 -0.15 -2.21 16 15 C -0.13 -2.23 5.73 -26.66 -0.15 -2.39 16 16 C 0.16 3.26 2.27 -67.79 -0.15 3.11 16 17 H 0.10 2.49 6.27 -51.69 -0.32 2.17 16 18 C 0.10 2.07 5.01 -2.52 -0.01 2.06 16 19 N -0.58 -13.14 2.38 -156.14 -0.37 -13.51 16 20 C -0.20 -4.95 10.37 -14.98 -0.16 -5.10 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -22.84 8.00 55.49 0.44 -22.40 16 24 Si 0.90 20.69 29.22 -169.99 -4.97 15.73 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.50 6.65 56.52 0.38 -6.12 16 28 H 0.06 1.30 7.33 -51.93 -0.38 0.92 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.37 6.46 -51.92 -0.34 1.04 16 31 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.74 6.57 -51.93 -0.34 0.40 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.90 6.77 -51.93 -0.35 0.55 16 37 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 38 H 0.06 1.19 7.25 -51.77 -0.38 0.81 16 39 H 0.06 1.05 5.46 -52.06 -0.28 0.76 16 40 H 0.06 1.22 8.15 -51.85 -0.42 0.80 16 41 H 0.05 0.79 8.15 -51.78 -0.42 0.37 16 42 H 0.06 0.89 8.17 -51.74 -0.42 0.46 16 43 H 0.06 0.84 7.68 -51.77 -0.40 0.44 16 44 H 0.05 0.87 6.45 -51.90 -0.33 0.54 16 45 H 0.06 0.92 8.16 -51.77 -0.42 0.50 16 46 H 0.03 0.51 7.88 -51.86 -0.41 0.10 16 47 H 0.12 2.67 3.45 -51.87 -0.18 2.49 16 48 H 0.25 6.23 8.31 -40.82 -0.34 5.89 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -26.60 344.81 -8.84 -35.43 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.20 Total: 6.72 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.57 Total: -1.49 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.37 Total: -48.20 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.97 Total: 15.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.60 -8.84 -35.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045857498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.070 kcal (2) G-P(sol) polarization free energy of solvation -26.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds