Wall clock time and date at job start Fri Apr 10 2020 20:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46675 * 2 1 4 4 C 1.53004 * 109.47259 * 119.99728 * 2 1 3 5 5 H 1.08998 * 109.47025 * 300.00436 * 4 2 1 6 6 C 1.52997 * 109.46893 * 180.02562 * 4 2 1 7 7 C 1.50700 * 109.46818 * 60.00539 * 4 2 1 8 8 O 1.21283 * 119.99845 * 23.42495 * 7 4 2 9 9 N 1.34775 * 119.99787 * 203.42438 * 7 4 2 10 10 C 1.45728 * 117.76030 * 355.23972 * 9 7 4 11 11 C 1.53058 * 109.55676 * 218.89324 * 10 9 7 12 12 C 1.52938 * 108.49513 * 306.19872 * 11 10 9 13 13 C 1.52311 * 109.84865 * 65.96787 * 12 11 10 14 14 H 1.09004 * 110.92321 * 66.60257 * 13 12 11 15 15 C 1.44195 * 117.75697 * 175.26495 * 9 7 4 16 16 H 1.09003 * 109.22988 * 27.36742 * 15 9 7 17 17 C 1.54058 * 111.76613 * 266.46232 * 15 9 7 18 18 C 1.54063 * 103.74295 * 206.74160 * 17 15 9 19 19 N 1.46881 * 107.70515 * 17.13404 * 18 17 15 20 20 C 1.36935 * 125.58253 * 182.96855 * 19 18 17 21 21 H 1.07998 * 120.00233 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99594 * 0.02697 * 20 19 18 23 23 N 1.31611 * 120.00418 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47348 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.46796 * 299.99653 * 24 22 20 27 27 H 1.48501 * 109.46983 * 59.99256 * 24 22 20 28 28 H 1.08995 * 109.47567 * 299.99345 * 1 2 3 29 29 H 1.08994 * 109.47442 * 60.00329 * 1 2 3 30 30 H 1.09006 * 109.46672 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47567 * 240.00655 * 2 1 3 32 32 H 1.09003 * 109.46879 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46917 * 299.99993 * 3 2 1 34 34 H 1.09004 * 109.46581 * 60.00358 * 3 2 1 35 35 H 1.09001 * 109.47498 * 67.47132 * 6 4 2 36 36 H 1.09000 * 109.47195 * 187.47411 * 6 4 2 37 37 H 1.09004 * 109.47409 * 307.46898 * 6 4 2 38 38 H 1.08997 * 109.45853 * 338.92159 * 10 9 7 39 39 H 1.08996 * 109.45380 * 98.87125 * 10 9 7 40 40 H 1.09001 * 109.63004 * 65.90077 * 11 10 9 41 41 H 1.09004 * 109.63305 * 186.49955 * 11 10 9 42 42 H 1.09000 * 109.42085 * 186.09133 * 12 11 10 43 43 H 1.09003 * 109.42155 * 305.95996 * 12 11 10 44 44 H 1.08998 * 110.57211 * 88.17731 * 17 15 9 45 45 H 1.09004 * 110.57232 * 325.30682 * 17 15 9 46 46 H 1.08995 * 109.81198 * 257.58188 * 18 17 15 47 47 H 1.09000 * 109.80930 * 136.68144 * 18 17 15 48 48 H 0.97004 * 120.00499 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 6 1.5378 -2.1420 1.2492 8 8 1.2223 -2.6737 0.2058 9 7 1.4392 -2.8219 2.4087 10 6 1.9300 -2.1750 3.6188 11 6 2.6303 -3.2085 4.5043 12 6 1.6699 -4.3749 4.7410 13 6 1.4057 -5.1017 3.4289 14 1 2.3089 -5.5935 3.0675 15 6 0.8557 -4.1399 2.3669 16 1 1.0196 -4.5739 1.3805 17 6 -0.6565 -4.1047 2.6590 18 6 -0.9491 -5.5002 3.2427 19 7 0.3318 -6.0898 3.6540 20 6 0.5014 -7.3478 4.1676 21 1 1.4882 -7.6907 4.4415 22 6 -0.5950 -8.1824 4.3360 23 7 -1.7976 -7.7644 4.0026 24 14 -0.3638 -9.8983 5.0373 25 1 -1.6795 -10.5822 5.1164 26 1 0.5459 -10.6744 4.1567 27 1 0.2262 -9.8021 6.3967 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8901 35 1 3.9330 0.2985 1.3833 36 1 3.9335 -1.3458 2.0651 37 1 3.9337 -1.1141 0.3003 38 1 2.6361 -1.3894 3.3497 39 1 1.0921 -1.7390 4.1627 40 1 3.5292 -3.5698 4.0047 41 1 2.8958 -2.7533 5.4585 42 1 2.1114 -5.0684 5.4567 43 1 0.7287 -3.9946 5.1383 44 1 -1.2206 -3.9482 1.7396 45 1 -0.8878 -3.3283 3.3883 46 1 -1.4178 -6.1271 2.4842 47 1 -1.6079 -5.4087 4.1062 48 1 -2.5639 -8.3474 4.1206 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049768656.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:40 Heat of formation + Delta-G solvation = -23.458847 kcal Electronic energy + Delta-G solvation = -25741.776029 eV Core-core repulsion = 22410.698522 eV Total energy + Delta-G solvation = -3331.077507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -40.69476 -38.37741 -36.06735 -35.39383 -32.57313 -32.35911 -30.88271 -28.94934 -28.30318 -27.35681 -25.12563 -24.36363 -23.75869 -22.00615 -21.20416 -20.05646 -19.22217 -17.98497 -17.24809 -16.87160 -15.92117 -15.04571 -14.78828 -14.68004 -14.51754 -14.20281 -14.00348 -13.69673 -13.41572 -13.18932 -12.93645 -12.48162 -12.33625 -12.28164 -12.22722 -11.96171 -11.87584 -11.62767 -11.37638 -11.08915 -11.00369 -10.93038 -10.82267 -10.73101 -10.63159 -10.61145 -10.41894 -10.10939 -10.01072 -9.62673 -9.55118 -9.28696 -8.58398 -8.23134 -6.85041 -5.69602 -3.04385 2.83187 3.24233 3.41424 3.45729 3.46966 4.46385 4.49499 4.55545 4.78787 4.93508 5.06833 5.14358 5.19500 5.27146 5.30275 5.38492 5.46546 5.49349 5.54932 5.55571 5.62183 5.68917 5.69165 5.72691 5.76998 5.82797 5.92369 5.97104 6.02558 6.07563 6.13548 6.26848 6.30345 6.32068 6.33851 6.41326 6.59892 6.61868 6.77889 7.02832 7.14882 7.58166 7.61391 7.68542 7.84844 8.26556 8.45266 9.22482 9.82406 10.47691 11.41154 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.030128 B = 0.004026 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.138519 B = 6952.600638 C = 7445.692047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.108 4.108 5 H 0.090 0.910 6 C -0.146 4.146 7 C 0.511 3.489 8 O -0.539 6.539 9 N -0.588 5.588 10 C 0.105 3.895 11 C -0.131 4.131 12 C -0.130 4.130 13 C 0.161 3.839 14 H 0.052 0.948 15 C 0.135 3.865 16 H 0.091 0.909 17 C -0.150 4.150 18 C 0.180 3.820 19 N -0.596 5.596 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.039 0.961 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.782 18.271 -2.725 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.129 4.129 5 H 0.108 0.892 6 C -0.203 4.203 7 C 0.299 3.701 8 O -0.416 6.416 9 N -0.320 5.320 10 C -0.018 4.018 11 C -0.170 4.170 12 C -0.170 4.170 13 C 0.053 3.947 14 H 0.070 0.930 15 C 0.030 3.970 16 H 0.109 0.891 17 C -0.189 4.189 18 C 0.055 3.945 19 N -0.320 5.320 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.430 17.733 -3.202 19.894 hybrid contribution -0.049 -0.919 0.615 1.107 sum 8.381 16.814 -2.586 18.964 Atomic orbital electron populations 1.21896 0.94934 1.02922 1.01153 1.20945 0.96198 0.95311 0.97243 1.21897 1.01038 0.95760 1.01751 1.21436 0.97457 0.93348 1.00657 0.89162 1.21850 0.92973 1.02544 1.02927 1.20692 0.77766 0.88115 0.83559 1.90665 1.49605 1.69972 1.31342 1.47094 1.60500 1.16879 1.07492 1.21591 0.98325 0.95622 0.86275 1.21839 0.99139 0.96992 0.99027 1.21988 0.98583 0.96176 1.00232 1.20825 0.92685 0.89424 0.91805 0.92971 1.21141 0.93243 0.81466 1.01113 0.89052 1.22977 0.95135 1.00521 1.00286 1.21050 0.87996 0.87530 0.97940 1.44494 1.01355 1.11707 1.74490 1.18968 0.93712 0.88170 1.34789 0.90494 1.24797 0.95384 0.98556 1.01510 1.69960 0.97879 1.35830 1.53081 0.86202 0.76661 0.84074 0.78818 1.21620 1.21152 1.21214 0.93195 0.92778 0.91502 0.90165 0.92428 0.92584 0.92760 0.91326 0.91900 0.91823 0.89992 0.92127 0.91741 0.91149 0.91881 0.91985 0.92097 0.92693 0.92980 0.94256 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.90 37.16 0.33 -1.41 16 2 C -0.08 -0.83 2.13 -90.61 -0.19 -1.02 16 3 C -0.15 -1.16 8.85 37.16 0.33 -0.83 16 4 C -0.11 -1.17 1.44 -91.77 -0.13 -1.30 16 5 H 0.09 0.85 6.95 -51.93 -0.36 0.49 16 6 C -0.15 -1.30 8.17 37.16 0.30 -1.00 16 7 C 0.51 7.78 5.94 -10.99 -0.07 7.71 16 8 O -0.54 -10.21 14.16 5.56 0.08 -10.13 16 9 N -0.59 -9.06 2.80 -167.43 -0.47 -9.53 16 10 C 0.10 1.26 5.61 -4.43 -0.02 1.24 16 11 C -0.13 -1.68 6.10 -26.73 -0.16 -1.84 16 12 C -0.13 -2.27 5.30 -27.11 -0.14 -2.41 16 13 C 0.16 3.31 3.25 -67.40 -0.22 3.09 16 14 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.13 2.59 2.78 -68.36 -0.19 2.40 16 16 H 0.09 1.98 7.04 -51.93 -0.37 1.61 16 17 C -0.15 -3.03 6.44 -25.62 -0.17 -3.19 16 18 C 0.18 4.46 5.39 -3.28 -0.02 4.44 16 19 N -0.60 -15.10 2.95 -163.96 -0.48 -15.58 16 20 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -27.12 10.29 55.49 0.57 -26.55 16 24 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.96 6.40 -51.93 -0.33 0.63 16 31 H 0.08 0.98 7.88 -51.93 -0.41 0.57 16 32 H 0.06 0.40 6.60 -51.93 -0.34 0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 6.85 -51.93 -0.36 0.11 16 36 H 0.06 0.56 6.61 -51.93 -0.34 0.21 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.76 4.37 -51.93 -0.23 0.54 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.16 8.01 -51.93 -0.42 0.75 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.45 7.25 -51.93 -0.38 1.07 16 47 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -31.13 356.52 -9.10 -40.23 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.54 Total: -0.07 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.60 Total: -0.85 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.38 Total: -51.66 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.13 -9.10 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049768656.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.766 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds