Wall clock time and date at job start Fri Apr 10 2020 20:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47102 * 2 1 4 4 C 1.52997 * 109.47378 * 120.00481 * 2 1 3 5 5 H 1.09007 * 109.47098 * 299.99485 * 4 2 1 6 6 C 1.53003 * 109.47378 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47615 * 59.99460 * 4 2 1 8 8 O 1.21284 * 119.99776 * 22.37234 * 7 4 2 9 9 N 1.34767 * 120.00249 * 202.37049 * 7 4 2 10 10 C 1.46798 * 119.57942 * 4.80546 * 9 7 4 11 11 C 1.53461 * 107.59820 * 127.94275 * 10 9 7 12 12 C 1.52740 * 108.44148 * 58.07564 * 11 10 9 13 13 C 1.53009 * 110.80852 * 296.23806 * 12 11 10 14 14 H 1.09001 * 111.38512 * 291.23263 * 13 12 11 15 15 C 1.45123 * 119.57626 * 184.52721 * 9 7 4 16 16 H 1.09001 * 109.97342 * 348.07886 * 15 9 7 17 17 C 1.54423 * 111.60292 * 111.35653 * 15 9 7 18 18 C 1.54572 * 102.44743 * 156.58324 * 17 15 9 19 19 N 1.46006 * 107.32971 * 338.31978 * 18 17 15 20 20 C 1.36934 * 125.64752 * 177.30453 * 19 18 17 21 21 H 1.08003 * 120.00109 * 180.23956 * 20 19 18 22 22 C 1.38818 * 120.00466 * 0.24133 * 20 19 18 23 23 N 1.31618 * 119.99662 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00228 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46944 * 60.00642 * 24 22 20 26 26 H 1.48506 * 109.47006 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47398 * 300.00289 * 24 22 20 28 28 H 1.09007 * 109.46585 * 299.99720 * 1 2 3 29 29 H 1.09000 * 109.47185 * 59.99544 * 1 2 3 30 30 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46741 * 239.99865 * 2 1 3 32 32 H 1.09000 * 109.47059 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46951 * 300.00227 * 3 2 1 34 34 H 1.08996 * 109.46991 * 60.00194 * 3 2 1 35 35 H 1.08999 * 109.47154 * 185.63093 * 6 4 2 36 36 H 1.08996 * 109.47204 * 65.62901 * 6 4 2 37 37 H 1.08995 * 109.46660 * 305.63426 * 6 4 2 38 38 H 1.09004 * 109.83401 * 247.46379 * 10 9 7 39 39 H 1.09000 * 109.83306 * 8.41546 * 10 9 7 40 40 H 1.08995 * 109.64647 * 177.76443 * 11 10 9 41 41 H 1.09004 * 109.63935 * 298.39681 * 11 10 9 42 42 H 1.09000 * 109.20589 * 56.58033 * 12 11 10 43 43 H 1.09000 * 109.21141 * 175.89110 * 12 11 10 44 44 H 1.08999 * 110.81838 * 274.82271 * 17 15 9 45 45 H 1.09008 * 110.81467 * 38.34496 * 17 15 9 46 46 H 1.08995 * 109.88432 * 97.73711 * 18 17 15 47 47 H 1.09007 * 109.88204 * 218.75906 * 18 17 15 48 48 H 0.96996 * 120.00151 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7219 1.2488 7 6 1.5377 -2.1421 1.2492 8 8 1.2040 -2.6674 0.2082 9 7 1.4593 -2.8291 2.4060 10 6 1.7641 -2.1526 3.6726 11 6 0.5862 -2.3982 4.6250 12 6 0.4090 -3.9057 4.7957 13 6 0.0290 -4.5621 3.4668 14 1 -0.9748 -4.2745 3.1541 15 6 1.0687 -4.2266 2.3841 16 1 0.6794 -4.4890 1.4003 17 6 2.2432 -5.1514 2.7712 18 6 1.5169 -6.4209 3.2713 19 7 0.1630 -6.0267 3.6498 20 6 -0.8190 -6.8709 4.0947 21 1 -1.7938 -6.4801 4.3469 22 6 -0.5618 -8.2291 4.2218 23 7 0.6262 -8.7054 3.9150 24 14 -1.9012 -9.3806 4.8294 25 1 -3.0624 -9.3204 3.9057 26 1 -1.3771 -10.7694 4.8748 27 1 -2.3292 -8.9678 6.1901 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9334 -1.3206 2.0840 36 1 3.9338 0.3006 1.3495 37 1 3.9330 -1.1460 0.3126 38 1 2.6781 -2.5641 4.1011 39 1 1.8842 -1.0829 3.5010 40 1 0.7959 -1.9421 5.5925 41 1 -0.3221 -1.9681 4.2029 42 1 1.3427 -4.3380 5.1552 43 1 -0.3774 -4.0939 5.5266 44 1 2.8620 -5.3761 1.9025 45 1 2.8396 -4.7071 3.5682 46 1 1.4771 -7.1634 2.4744 47 1 2.0403 -6.8315 4.1349 48 1 0.8059 -9.6544 4.0034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049768657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:46 Heat of formation + Delta-G solvation = -21.576218 kcal Electronic energy + Delta-G solvation = -25732.356923 eV Core-core repulsion = 22401.361053 eV Total energy + Delta-G solvation = -3330.995871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.59312 -38.46800 -36.04859 -35.30706 -32.41586 -32.27757 -30.83490 -28.94425 -28.25384 -27.35509 -25.13647 -24.26736 -23.85415 -22.03077 -21.14931 -20.03926 -19.15383 -18.07820 -17.26549 -16.87304 -15.82467 -15.12014 -14.77450 -14.66110 -14.42632 -14.17505 -13.97353 -13.63462 -13.43945 -13.17901 -12.78884 -12.53954 -12.38846 -12.25790 -12.16114 -12.03083 -11.90760 -11.63749 -11.34652 -11.08934 -10.99750 -10.95207 -10.81437 -10.76730 -10.66496 -10.58340 -10.34174 -10.09598 -10.01780 -9.63402 -9.59114 -9.28591 -8.59496 -8.20860 -6.84516 -5.69720 -3.04171 2.84891 3.22297 3.41712 3.46045 3.47130 4.48150 4.49986 4.57038 4.76519 4.89486 5.08440 5.17145 5.21892 5.27548 5.31980 5.38705 5.44444 5.50927 5.54653 5.62021 5.63068 5.70516 5.71357 5.72266 5.76204 5.82589 5.89748 5.97919 6.01629 6.09616 6.13679 6.24244 6.30204 6.32768 6.33452 6.39042 6.52930 6.62894 6.76806 7.02549 7.09586 7.56935 7.63073 7.70340 7.84539 8.26573 8.45472 9.23520 9.82221 10.47934 11.41029 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.029039 B = 0.003919 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.975300 B = 7142.623654 C = 7169.124367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.142 4.142 7 C 0.515 3.485 8 O -0.542 6.542 9 N -0.593 5.593 10 C 0.104 3.896 11 C -0.134 4.134 12 C -0.129 4.129 13 C 0.156 3.844 14 H 0.058 0.942 15 C 0.129 3.871 16 H 0.101 0.899 17 C -0.151 4.151 18 C 0.182 3.818 19 N -0.596 5.596 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.040 0.960 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 19.675 -2.281 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 C -0.205 4.205 4 C -0.130 4.130 5 H 0.110 0.890 6 C -0.200 4.200 7 C 0.303 3.697 8 O -0.419 6.419 9 N -0.324 5.324 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.169 4.169 13 C 0.047 3.953 14 H 0.076 0.924 15 C 0.025 3.975 16 H 0.119 0.881 17 C -0.191 4.191 18 C 0.057 3.943 19 N -0.320 5.320 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.100 19.090 -2.784 19.954 hybrid contribution -0.641 -0.735 0.559 1.124 sum 4.459 18.355 -2.225 19.020 Atomic orbital electron populations 1.21901 0.94968 1.02915 1.01117 1.20946 0.96170 0.95307 0.97318 1.21898 1.01067 0.95763 1.01730 1.21456 0.97556 0.93413 1.00550 0.89009 1.21768 0.92845 1.02469 1.02878 1.20609 0.77626 0.88014 0.83435 1.90667 1.49005 1.70701 1.31526 1.47632 1.67180 1.11363 1.06226 1.21901 0.98461 0.97009 0.84472 1.21936 0.97964 0.98688 0.98654 1.22106 1.02223 0.92463 1.00140 1.21256 0.95972 0.86247 0.91785 0.92437 1.21676 0.96025 0.78552 1.01236 0.88139 1.23124 0.97358 0.98495 1.00080 1.20967 0.84047 0.90693 0.98629 1.44417 1.10202 1.00301 1.77103 1.18991 0.91771 0.88032 1.36854 0.90522 1.24797 0.97040 0.96767 1.01672 1.69954 1.20094 1.12833 1.53955 0.86200 0.80864 0.80116 0.78570 1.21165 1.21624 1.21210 0.93232 0.92794 0.91478 0.90177 0.92406 0.92599 0.92770 0.92093 0.91379 0.91933 0.91367 0.89944 0.91368 0.91865 0.91877 0.92203 0.92212 0.92349 0.93248 0.94187 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.90 37.16 0.33 -1.38 16 2 C -0.08 -0.83 2.13 -90.62 -0.19 -1.02 16 3 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 4 C -0.11 -1.18 1.49 -91.77 -0.14 -1.31 16 5 H 0.09 0.85 6.09 -51.92 -0.32 0.53 16 6 C -0.14 -1.31 8.62 37.16 0.32 -0.99 16 7 C 0.52 7.84 6.04 -10.99 -0.07 7.77 16 8 O -0.54 -10.31 14.16 5.55 0.08 -10.24 16 9 N -0.59 -9.05 2.74 -165.25 -0.45 -9.50 16 10 C 0.10 1.25 5.65 -3.64 -0.02 1.23 16 11 C -0.13 -1.72 6.11 -26.63 -0.16 -1.88 16 12 C -0.13 -2.25 5.10 -26.86 -0.14 -2.39 16 13 C 0.16 3.20 3.58 -66.57 -0.24 2.96 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.13 2.46 3.12 -67.50 -0.21 2.25 16 16 H 0.10 2.19 6.94 -51.93 -0.36 1.83 16 17 C -0.15 -2.95 6.08 -25.16 -0.15 -3.10 16 18 C 0.18 4.45 5.15 -3.48 -0.02 4.43 16 19 N -0.60 -15.03 2.88 -163.30 -0.47 -15.50 16 20 C -0.23 -6.32 10.29 -15.06 -0.15 -6.47 16 21 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 22 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 23 N -0.92 -27.08 10.31 55.49 0.57 -26.51 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 31 H 0.08 0.98 7.88 -51.93 -0.41 0.57 16 32 H 0.06 0.41 6.56 -51.93 -0.34 0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.56 7.78 -51.93 -0.40 0.16 16 36 H 0.07 0.48 6.75 -51.93 -0.35 0.13 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 39 H 0.08 0.75 5.32 -51.93 -0.28 0.48 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.18 7.13 -51.93 -0.37 0.81 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 1.05 6.83 -51.92 -0.35 0.69 16 46 H 0.05 1.36 7.28 -51.93 -0.38 0.98 16 47 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -31.10 355.13 -9.00 -40.10 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.45 Total: 0.14 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.61 Total: -1.01 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.35 Total: -51.50 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.10 -9.00 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049768657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.523 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds