Wall clock time and date at job start Fri Apr 10 2020 20:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 C 1.53004 * 109.47582 * 120.00046 * 2 1 3 5 5 H 1.08999 * 109.46710 * 300.00166 * 4 2 1 6 6 C 1.52995 * 109.47221 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.46542 * 60.00011 * 4 2 1 8 8 O 1.21275 * 120.00408 * 34.37783 * 7 4 2 9 9 N 1.34784 * 119.99722 * 214.37213 * 7 4 2 10 10 C 1.47847 * 122.22872 * 3.87728 * 9 7 4 11 11 C 1.53144 * 110.82284 * 127.48780 * 10 9 7 12 12 C 1.53872 * 111.46513 * 48.77381 * 11 10 9 13 13 C 1.51078 * 107.34835 * 302.93992 * 12 11 10 14 14 H 1.09011 * 108.73906 * 308.51824 * 13 12 11 15 15 C 1.45724 * 122.22758 * 184.17201 * 9 7 4 16 16 H 1.08997 * 111.06585 * 119.45837 * 15 9 7 17 17 C 1.53430 * 116.38173 * 350.09040 * 15 9 7 18 18 C 1.55470 * 101.67292 * 207.26632 * 17 15 9 19 19 N 1.45029 * 119.18481 * 183.87213 * 13 12 11 20 20 C 1.36930 * 126.55987 * 28.81640 * 19 13 12 21 21 H 1.07998 * 120.00503 * 359.97438 * 20 19 13 22 22 C 1.38817 * 120.00157 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99413 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00503 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47479 * 89.99781 * 24 22 20 26 26 H 1.48495 * 109.47184 * 210.00103 * 24 22 20 27 27 H 1.48501 * 109.46765 * 329.99743 * 24 22 20 28 28 H 1.08998 * 109.47396 * 60.00310 * 1 2 3 29 29 H 1.08999 * 109.46996 * 299.99360 * 1 2 3 30 30 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47201 * 240.00300 * 2 1 3 32 32 H 1.08996 * 109.47218 * 299.99908 * 3 2 1 33 33 H 1.09006 * 109.46847 * 60.00083 * 3 2 1 34 34 H 1.09002 * 109.47517 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47300 * 55.24242 * 6 4 2 36 36 H 1.08999 * 109.46972 * 175.23636 * 6 4 2 37 37 H 1.08995 * 109.47606 * 295.23755 * 6 4 2 38 38 H 1.08999 * 109.16452 * 247.94915 * 10 9 7 39 39 H 1.09004 * 109.16236 * 7.13328 * 10 9 7 40 40 H 1.09002 * 109.20928 * 288.19921 * 11 10 9 41 41 H 1.08993 * 108.93159 * 169.17550 * 11 10 9 42 42 H 1.08998 * 109.88472 * 183.46807 * 12 11 10 43 43 H 1.09003 * 109.87407 * 62.39491 * 12 11 10 44 44 H 1.09004 * 110.98447 * 325.36153 * 17 15 9 45 45 H 1.09002 * 110.98772 * 89.16854 * 17 15 9 46 46 H 1.09000 * 109.95660 * 263.22495 * 18 17 15 47 47 H 1.08993 * 109.96626 * 141.98129 * 18 17 15 48 48 H 0.97006 * 119.99684 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2488 7 6 1.5377 -2.1421 1.2491 8 8 1.4111 -2.7405 0.2019 9 7 1.2292 -2.7478 2.4130 10 6 1.2847 -2.0394 3.7095 11 6 -0.0359 -2.1916 4.4699 12 6 -0.4942 -3.6598 4.5141 13 6 -0.6061 -4.1400 3.0860 14 1 -1.2172 -3.4324 2.5255 15 6 0.8249 -4.1463 2.4779 16 1 1.5150 -4.7256 3.0913 17 6 0.5391 -4.8363 1.1376 18 6 -0.4819 -5.9305 1.5585 19 7 -1.1051 -5.4767 2.8264 20 6 -1.9837 -6.1844 3.6025 21 1 -2.3743 -5.7489 4.5103 22 6 -2.3725 -7.4617 3.2225 23 7 -1.8968 -7.9922 2.1158 24 14 -3.5705 -8.4274 4.2815 25 1 -4.9601 -8.1428 3.8422 26 1 -3.2949 -9.8798 4.1418 27 1 -3.4087 -8.0272 5.7024 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 -0.0005 35 1 3.9337 0.3022 1.1634 36 1 3.9334 -1.1599 2.1784 37 1 3.9330 -1.3079 0.4046 38 1 2.0957 -2.4531 4.3088 39 1 1.4766 -0.9813 3.5312 40 1 -0.8035 -1.5936 3.9787 41 1 0.0993 -1.8299 5.4892 42 1 -1.4642 -3.7307 5.0062 43 1 0.2396 -4.2611 5.0509 44 1 0.0941 -4.1397 0.4270 45 1 1.4446 -5.2841 0.7281 46 1 0.0324 -6.8787 1.7153 47 1 -1.2449 -6.0436 0.7885 48 1 -2.1687 -8.8847 1.8500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049768658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:16:55 Heat of formation + Delta-G solvation = -13.696024 kcal Electronic energy + Delta-G solvation = -25895.180386 eV Core-core repulsion = 22564.526226 eV Total energy + Delta-G solvation = -3330.654160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.51575 -38.26769 -36.00219 -35.36433 -32.55676 -32.21538 -30.80797 -28.86353 -28.19060 -27.36575 -25.06534 -24.44406 -23.65978 -21.50175 -21.30278 -19.97909 -19.50550 -18.53756 -16.90314 -16.26653 -15.68119 -15.17570 -14.89988 -14.59525 -14.46990 -14.15351 -13.97070 -13.68619 -13.43196 -13.20509 -12.63897 -12.51218 -12.36768 -12.31882 -12.18229 -12.08087 -11.79285 -11.65972 -11.44935 -11.15316 -10.98351 -10.84760 -10.80121 -10.68874 -10.54478 -10.38906 -10.31542 -10.06321 -9.93351 -9.79969 -9.57890 -8.81747 -8.52454 -8.15128 -6.78696 -5.66663 -3.00737 2.92769 3.23132 3.42166 3.46737 3.48881 4.49681 4.52583 4.57691 4.76067 4.84433 5.06680 5.13403 5.21722 5.30261 5.35628 5.40063 5.40513 5.48037 5.56133 5.63148 5.66833 5.71245 5.73768 5.78056 5.81148 5.84758 5.90993 5.99527 6.03505 6.11234 6.14018 6.30775 6.31414 6.32865 6.34313 6.44025 6.61058 6.76541 6.84508 6.94565 7.25170 7.62117 7.70234 7.80095 7.88759 8.28846 8.54447 9.22890 9.86883 10.55720 11.45334 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.004263 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.544648 B = 6566.452599 C = 6918.929618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.110 4.110 5 H 0.088 0.912 6 C -0.141 4.141 7 C 0.523 3.477 8 O -0.532 6.532 9 N -0.601 5.601 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.159 3.841 14 H 0.017 0.983 15 C 0.116 3.884 16 H 0.077 0.923 17 C -0.131 4.131 18 C 0.172 3.828 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 18.141 1.201 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.132 4.132 5 H 0.106 0.894 6 C -0.199 4.199 7 C 0.311 3.689 8 O -0.409 6.409 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.168 4.168 12 C -0.154 4.154 13 C 0.049 3.951 14 H 0.034 0.966 15 C 0.012 3.988 16 H 0.095 0.905 17 C -0.169 4.169 18 C 0.048 3.952 19 N -0.318 5.318 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.606 17.590 0.618 20.051 hybrid contribution -0.700 -0.607 0.742 1.187 sum 8.907 16.983 1.360 19.225 Atomic orbital electron populations 1.21871 0.94919 1.02675 1.01309 1.20962 0.96082 0.95398 0.97429 1.21912 1.01043 0.95757 1.01749 1.21483 0.97500 0.93733 1.00449 0.89392 1.21757 0.92924 1.02598 1.02584 1.20439 0.77157 0.88186 0.83165 1.90674 1.53015 1.66086 1.31077 1.48051 1.67026 1.11988 1.06271 1.21851 0.98215 0.96957 0.84446 1.21974 0.96748 0.98284 0.99780 1.21424 1.01519 0.93872 0.98583 1.20761 0.91688 0.89213 0.93395 0.96586 1.22386 0.96728 0.80026 0.99687 0.90518 1.22994 0.99979 0.98778 0.95162 1.21738 0.92551 0.93759 0.87165 1.44092 1.50907 1.12453 1.24343 1.18986 1.17298 0.96136 1.02991 0.90416 1.24801 1.00475 0.97357 0.97756 1.69958 1.46973 1.16161 1.23604 0.86154 0.80844 0.79439 0.79532 1.21671 1.21714 1.20742 0.92651 0.93082 0.91888 0.90013 0.92562 0.92780 0.92360 0.91300 0.92403 0.91879 0.91670 0.90167 0.91843 0.91036 0.91544 0.91842 0.89592 0.92359 0.92688 0.94347 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.93 37.15 0.33 -1.45 16 2 C -0.08 -0.87 2.19 -90.62 -0.20 -1.07 16 3 C -0.15 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.11 -1.23 1.88 -91.77 -0.17 -1.40 16 5 H 0.09 0.84 5.72 -51.93 -0.30 0.54 16 6 C -0.14 -1.34 8.95 37.16 0.33 -1.00 16 7 C 0.52 8.11 5.70 -10.98 -0.06 8.05 16 8 O -0.53 -10.16 12.43 5.56 0.07 -10.09 16 9 N -0.60 -9.36 2.91 -163.74 -0.48 -9.83 16 10 C 0.11 1.27 6.32 -3.23 -0.02 1.25 16 11 C -0.13 -1.63 5.94 -26.20 -0.16 -1.78 16 12 C -0.12 -1.99 5.45 -27.24 -0.15 -2.14 16 13 C 0.16 3.35 2.57 -68.36 -0.18 3.18 16 14 H 0.02 0.38 8.06 -51.92 -0.42 -0.04 16 15 C 0.12 2.24 3.32 -66.80 -0.22 2.02 16 16 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 17 C -0.13 -2.83 5.09 -25.20 -0.13 -2.96 16 18 C 0.17 4.44 5.47 -1.69 -0.01 4.43 16 19 N -0.59 -15.41 3.35 -163.28 -0.55 -15.96 16 20 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 21 H 0.08 2.07 7.31 -52.49 -0.38 1.69 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -27.54 10.46 55.49 0.58 -26.96 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 31 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.42 6.33 -51.93 -0.33 0.09 16 35 H 0.07 0.51 6.19 -51.93 -0.32 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.73 5.42 -51.93 -0.28 0.45 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 43 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 44 H 0.09 1.96 6.08 -51.93 -0.32 1.64 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.05 1.54 7.19 -51.93 -0.37 1.16 16 47 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -31.85 354.54 -9.09 -40.94 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.49 Total: -0.18 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.55 Total: -0.52 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.44 Total: -52.75 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.85 -9.09 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049768658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.245 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds