Wall clock time and date at job start Fri Apr 10 2020 20:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47020 * 2 1 4 4 C 1.52999 * 109.47075 * 119.99679 * 2 1 3 5 5 H 1.08997 * 109.47658 * 300.00568 * 4 2 1 6 6 C 1.52997 * 109.47075 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.46745 * 60.00167 * 4 2 1 8 8 O 1.21285 * 120.00130 * 27.17484 * 7 4 2 9 9 N 1.34780 * 119.99911 * 207.16605 * 7 4 2 10 10 C 1.48152 * 122.41257 * 355.03364 * 9 7 4 11 11 C 1.52711 * 111.65816 * 231.95975 * 10 9 7 12 12 C 1.53873 * 111.52230 * 311.89403 * 11 10 9 13 13 C 1.51086 * 107.34073 * 56.92494 * 12 11 10 14 14 H 1.08995 * 108.30532 * 51.24409 * 13 12 11 15 15 C 1.45725 * 122.22745 * 175.85552 * 9 7 4 16 16 H 1.09001 * 111.06654 * 241.39330 * 15 9 7 17 17 C 1.53436 * 116.37462 * 9.89252 * 15 9 7 18 18 C 1.55479 * 101.66634 * 153.55312 * 17 15 9 19 19 N 1.45030 * 119.18382 * 176.11602 * 13 12 11 20 20 C 1.36934 * 126.56385 * 331.47367 * 19 13 12 21 21 H 1.08002 * 119.99735 * 359.71432 * 20 19 13 22 22 C 1.38813 * 120.00000 * 179.71283 * 20 19 13 23 23 N 1.31611 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99667 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47351 * 60.00309 * 24 22 20 26 26 H 1.48507 * 109.46717 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47134 * 299.99565 * 24 22 20 28 28 H 1.08997 * 109.47341 * 299.99558 * 1 2 3 29 29 H 1.08999 * 109.47167 * 60.00000 * 1 2 3 30 30 H 1.09004 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47169 * 239.99966 * 2 1 3 32 32 H 1.09001 * 109.47177 * 59.99971 * 3 2 1 33 33 H 1.08995 * 109.47319 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47150 * 300.00010 * 3 2 1 35 35 H 1.09001 * 109.47059 * 307.04052 * 6 4 2 36 36 H 1.09001 * 109.47109 * 67.03615 * 6 4 2 37 37 H 1.09003 * 109.47498 * 187.03910 * 6 4 2 38 38 H 1.08996 * 108.51948 * 111.59733 * 10 9 7 39 39 H 1.09008 * 109.15344 * 352.73664 * 10 9 7 40 40 H 1.08994 * 109.07001 * 191.36788 * 11 10 9 41 41 H 1.09006 * 109.07199 * 72.41383 * 11 10 9 42 42 H 1.09000 * 109.87948 * 297.46355 * 12 11 10 43 43 H 1.09004 * 109.94194 * 176.42096 * 12 11 10 44 44 H 1.08994 * 110.98731 * 35.45956 * 17 15 9 45 45 H 1.08997 * 110.98538 * 271.64639 * 17 15 9 46 46 H 1.09001 * 109.95443 * 218.01799 * 18 17 15 47 47 H 1.08994 * 109.95836 * 96.78135 * 18 17 15 48 48 H 0.97005 * 120.00173 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7206 1.2496 7 6 1.5376 -2.1420 1.2492 8 8 1.2867 -2.6965 0.2002 9 7 1.3673 -2.7966 2.4150 10 6 1.7577 -2.2112 3.7188 11 6 2.6474 -3.1600 4.5189 12 6 2.0623 -4.5826 4.5600 13 6 1.8877 -5.0392 3.1305 14 1 2.8291 -4.8832 2.6038 15 6 0.8017 -4.1381 2.4776 16 1 -0.1225 -4.1471 3.0555 17 6 0.6244 -4.8662 1.1387 18 6 0.6990 -6.3557 1.5785 19 7 1.4276 -6.3898 2.8707 20 6 1.6231 -7.4857 3.6681 21 1 2.1726 -7.3895 4.5929 22 6 1.1149 -8.7203 3.2879 23 7 0.4448 -8.8374 2.1612 24 14 1.3810 -10.2151 4.3761 25 1 0.7728 -9.9719 5.7087 26 1 0.7451 -11.4024 3.7504 27 1 2.8372 -10.4597 4.5338 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 3.9336 -1.1213 0.3034 36 1 3.9329 0.2994 1.3757 37 1 3.9334 -1.3396 2.0699 38 1 0.8528 -2.0027 4.2896 39 1 2.2943 -1.2783 3.5457 40 1 2.7429 -2.7846 5.5377 41 1 3.6353 -3.1945 4.0593 42 1 1.0971 -4.5718 5.0664 43 1 2.7470 -5.2513 5.0819 44 1 1.4338 -4.6213 0.4510 45 1 -0.3449 -4.6381 0.6956 46 1 1.2388 -6.9376 0.8314 47 1 -0.3064 -6.7563 1.7075 48 1 0.0900 -9.7002 1.8953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049768659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:00 Heat of formation + Delta-G solvation = -16.899729 kcal Electronic energy + Delta-G solvation = -25830.509085 eV Core-core repulsion = 22499.716002 eV Total energy + Delta-G solvation = -3330.793083 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50286 -38.27624 -35.98369 -35.36868 -32.58001 -32.23287 -30.82102 -28.86121 -28.16660 -27.35481 -25.07165 -24.43766 -23.64237 -21.50044 -21.31441 -19.98978 -19.56810 -18.43821 -16.92206 -16.24137 -15.69218 -15.29234 -14.74864 -14.60358 -14.42672 -14.13680 -13.94349 -13.68965 -13.53021 -13.25750 -12.65516 -12.52440 -12.34407 -12.28755 -12.16875 -12.09212 -11.80668 -11.55787 -11.51961 -11.13809 -10.98934 -10.81508 -10.78339 -10.71350 -10.56854 -10.45563 -10.34124 -10.08748 -9.92759 -9.79487 -9.57977 -8.82551 -8.52798 -8.15470 -6.79287 -5.66687 -3.01016 2.91732 3.22908 3.42355 3.46512 3.48079 4.49502 4.52315 4.57704 4.80647 4.85994 5.07096 5.11962 5.22637 5.29627 5.32957 5.38566 5.44973 5.47841 5.54679 5.62151 5.65547 5.70545 5.73082 5.76429 5.80826 5.83606 5.91235 5.99341 6.03085 6.12059 6.13570 6.29961 6.31198 6.31620 6.34188 6.43213 6.61456 6.76093 6.84150 6.94426 7.24700 7.61568 7.70012 7.80122 7.88504 8.28761 8.54051 9.22663 9.86643 10.55448 11.45154 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.004200 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.660847 B = 6665.051657 C = 7263.742464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.107 4.107 5 H 0.087 0.913 6 C -0.143 4.143 7 C 0.523 3.477 8 O -0.531 6.531 9 N -0.601 5.601 10 C 0.110 3.890 11 C -0.128 4.128 12 C -0.116 4.116 13 C 0.160 3.840 14 H 0.016 0.984 15 C 0.115 3.885 16 H 0.076 0.924 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.592 5.592 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 20.409 1.073 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 C -0.204 4.204 4 C -0.129 4.129 5 H 0.105 0.895 6 C -0.200 4.200 7 C 0.311 3.689 8 O -0.407 6.407 9 N -0.334 5.334 10 C -0.013 4.013 11 C -0.167 4.167 12 C -0.155 4.155 13 C 0.050 3.950 14 H 0.033 0.967 15 C 0.011 3.989 16 H 0.094 0.906 17 C -0.169 4.169 18 C 0.048 3.952 19 N -0.317 5.317 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.013 19.862 0.477 20.095 hybrid contribution 0.094 -0.870 0.767 1.164 sum 3.108 18.992 1.245 19.285 Atomic orbital electron populations 1.21880 0.95041 1.02731 1.01111 1.20952 0.96065 0.95338 0.97396 1.21891 1.01103 0.95762 1.01667 1.21429 0.97500 0.93578 1.00364 0.89514 1.21788 0.92968 1.02313 1.02971 1.20453 0.77530 0.87812 0.83146 1.90678 1.50915 1.68159 1.30985 1.48102 1.61825 1.17511 1.05991 1.21760 0.98973 0.96369 0.84198 1.21884 0.99220 0.96044 0.99572 1.21439 1.01113 0.94277 0.98652 1.20721 0.94586 0.86384 0.93279 0.96664 1.22363 0.96851 0.79978 0.99715 0.90571 1.22985 1.02190 0.96598 0.95107 1.21744 0.97348 0.89579 0.86574 1.44073 1.63752 1.02066 1.21816 1.18941 1.29583 0.85709 1.01300 0.90456 1.24799 1.00358 0.97611 0.97559 1.69940 1.40777 1.23542 1.22425 0.86234 0.77619 0.82519 0.79578 1.21206 1.21618 1.21233 0.93264 0.92765 0.91674 0.90027 0.92838 0.92401 0.92603 0.91811 0.91496 0.92170 0.91810 0.90274 0.90915 0.91881 0.91834 0.91522 0.89739 0.92340 0.94381 0.92632 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.91 37.16 0.33 -1.35 16 2 C -0.08 -0.84 2.14 -90.62 -0.19 -1.04 16 3 C -0.15 -1.18 8.84 37.16 0.33 -0.85 16 4 C -0.11 -1.19 1.47 -91.77 -0.14 -1.33 16 5 H 0.09 0.82 6.74 -51.93 -0.35 0.47 16 6 C -0.14 -1.40 8.37 37.16 0.31 -1.09 16 7 C 0.52 8.10 5.95 -10.98 -0.07 8.03 16 8 O -0.53 -10.08 11.93 5.55 0.07 -10.02 16 9 N -0.60 -9.36 2.96 -163.75 -0.48 -9.85 16 10 C 0.11 1.29 6.06 -3.28 -0.02 1.27 16 11 C -0.13 -1.61 5.93 -26.42 -0.16 -1.77 16 12 C -0.12 -2.00 5.45 -27.24 -0.15 -2.14 16 13 C 0.16 3.37 2.60 -68.36 -0.18 3.19 16 14 H 0.02 0.36 8.03 -51.93 -0.42 -0.05 16 15 C 0.12 2.23 3.29 -66.80 -0.22 2.01 16 16 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.13 -2.83 5.05 -25.19 -0.13 -2.95 16 18 C 0.17 4.43 5.47 -1.69 -0.01 4.42 16 19 N -0.59 -15.40 3.35 -163.28 -0.55 -15.95 16 20 C -0.23 -6.33 9.94 -15.06 -0.15 -6.48 16 21 H 0.08 2.06 7.30 -52.49 -0.38 1.67 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -27.52 10.46 55.49 0.58 -26.94 16 24 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.91 6.54 -51.93 -0.34 0.57 16 31 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 6.59 -51.93 -0.34 0.08 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.50 6.83 -51.93 -0.35 0.15 16 37 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.72 5.31 -51.92 -0.28 0.45 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 43 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 44 H 0.08 1.93 6.13 -51.93 -0.32 1.61 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 1.08 7.82 -51.93 -0.41 0.67 16 47 H 0.06 1.55 7.17 -51.93 -0.37 1.18 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -31.75 353.97 -9.15 -40.89 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.54 Total: -0.33 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.53 Total: -0.37 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.45 Total: -52.73 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.75 -9.15 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049768659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds