Wall clock time and date at job start Fri Apr 10 2020 20:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47050 * 2 1 4 4 C 1.53001 * 109.47354 * 120.00086 * 2 1 3 5 5 H 1.09007 * 109.46990 * 300.00430 * 4 2 1 6 6 C 1.52998 * 109.47113 * 59.99953 * 4 2 1 7 7 C 1.50699 * 109.47412 * 179.97438 * 4 2 1 8 8 O 1.21278 * 119.99906 * 0.02562 * 7 4 2 9 9 N 1.34776 * 120.00045 * 179.97438 * 7 4 2 10 10 C 1.47168 * 136.00122 * 359.64422 * 9 7 4 11 11 C 1.52642 * 87.96979 * 206.70980 * 10 9 7 12 12 C 1.47160 * 136.00232 * 179.97438 * 9 7 4 13 13 C 1.52557 * 113.89573 * 88.16925 * 11 10 9 14 14 C 1.53348 * 109.13175 * 190.30599 * 13 11 10 15 15 N 1.46885 * 108.75296 * 307.75912 * 14 13 11 16 16 C 1.36928 * 120.46452 * 235.60588 * 15 14 13 17 17 H 1.08001 * 120.00432 * 28.46538 * 16 15 14 18 18 C 1.38815 * 120.00294 * 208.46379 * 16 15 14 19 19 N 1.31620 * 119.99558 * 17.64914 * 18 16 15 20 20 Si 1.86799 * 120.00581 * 197.64643 * 18 16 15 21 21 H 1.48501 * 109.46930 * 60.00111 * 20 18 16 22 22 H 1.48490 * 109.47348 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46901 * 300.00357 * 20 18 16 24 24 C 1.46895 * 119.07151 * 55.62179 * 15 14 13 25 25 C 1.52555 * 114.26059 * 220.76071 * 11 10 9 26 26 H 1.09002 * 109.47330 * 59.99936 * 1 2 3 27 27 H 1.09005 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46816 * 299.99842 * 1 2 3 29 29 H 1.08998 * 109.47334 * 240.00143 * 2 1 3 30 30 H 1.09009 * 109.46946 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47485 * 299.99960 * 3 2 1 32 32 H 1.08999 * 109.47182 * 60.00382 * 3 2 1 33 33 H 1.09001 * 109.47363 * 180.02562 * 6 4 2 34 34 H 1.09009 * 109.47440 * 300.00134 * 6 4 2 35 35 H 1.09001 * 109.47627 * 60.00128 * 6 4 2 36 36 H 1.09005 * 113.48410 * 321.40544 * 10 9 7 37 37 H 1.09000 * 113.49135 * 91.91014 * 10 9 7 38 38 H 1.09002 * 113.49024 * 268.09293 * 12 9 7 39 39 H 1.08997 * 113.48549 * 38.53363 * 12 9 7 40 40 H 1.09001 * 109.52841 * 310.20137 * 13 11 10 41 41 H 1.09007 * 109.52799 * 70.40697 * 13 11 10 42 42 H 1.08998 * 109.59366 * 187.97952 * 14 13 11 43 43 H 1.09001 * 109.59155 * 67.53694 * 14 13 11 44 44 H 0.96996 * 119.99939 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.59034 * 184.59484 * 24 15 14 46 46 H 1.08994 * 109.59416 * 64.14992 * 24 15 14 47 47 H 1.09003 * 109.52635 * 289.75021 * 25 11 10 48 48 H 1.08992 * 109.52905 * 49.89528 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5301 -2.1637 1.2492 7 6 3.5471 -0.7218 1.2489 8 8 4.1534 -0.1966 0.3394 9 7 4.2209 -1.3051 2.2599 10 6 3.8649 -2.0127 3.5002 11 6 5.2042 -1.5621 4.0776 12 6 5.6355 -1.5086 2.6109 13 6 5.1550 -0.1996 4.7620 14 6 6.5853 0.2606 5.0690 15 7 7.2789 -0.8087 5.7990 16 6 7.8533 -0.5585 7.0165 17 1 7.4505 0.2136 7.6553 18 6 8.9534 -1.2973 7.4300 19 7 9.6563 -1.9792 6.5506 20 14 9.4362 -1.3238 9.2343 21 1 8.3141 -1.8704 10.0390 22 1 10.6367 -2.1793 9.4131 23 1 9.7417 0.0576 9.6852 24 6 7.3481 -2.1502 5.2044 25 6 5.9233 -2.6279 4.8987 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.8931 -2.6775 2.1394 34 1 0.4400 -2.1638 1.2492 35 1 1.8934 -2.6776 0.3592 36 1 3.0053 -1.5826 4.0143 37 1 3.7864 -3.0929 3.3770 38 1 6.0432 -2.4504 2.2433 39 1 6.2691 -0.6540 2.3740 40 1 4.6737 0.5224 4.1023 41 1 4.5904 -0.2786 5.6911 42 1 6.5558 1.1617 5.6816 43 1 7.1108 0.4670 4.1366 44 1 10.4252 -2.4951 6.8394 45 1 7.8212 -2.8371 5.9062 46 1 7.9266 -2.1115 4.2814 47 1 5.3859 -2.7923 5.8327 48 1 5.9634 -3.5584 4.3327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050685149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:22 Heat of formation + Delta-G solvation = 6.480439 kcal Electronic energy + Delta-G solvation = -25082.935293 eV Core-core repulsion = 21753.156051 eV Total energy + Delta-G solvation = -3329.779243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.88890 -38.98922 -36.18026 -35.76427 -32.59634 -31.33362 -30.41122 -29.61949 -27.52671 -26.99659 -25.96979 -24.53262 -23.81348 -22.39065 -21.08470 -20.36803 -18.86664 -18.02676 -17.01680 -16.46746 -16.06259 -15.48684 -14.86956 -14.73350 -14.38083 -14.15432 -13.90061 -13.66071 -13.58652 -13.17785 -12.96360 -12.73648 -12.39616 -12.24420 -12.22987 -12.14354 -11.88571 -11.71471 -11.47626 -11.42844 -11.12096 -11.02607 -10.84041 -10.72605 -10.68854 -10.48644 -10.30368 -10.08133 -9.82993 -9.67703 -9.62199 -9.25114 -8.50136 -8.45421 -6.67058 -5.80093 -3.22669 2.73034 2.97139 3.37621 3.43684 3.44666 4.36725 4.48767 4.50508 4.59154 4.72074 5.00725 5.04420 5.16619 5.23771 5.25654 5.31904 5.37543 5.48865 5.52318 5.53170 5.57817 5.61824 5.66401 5.68376 5.72553 5.79990 5.87158 5.94162 5.96672 6.05238 6.07522 6.13152 6.25654 6.26716 6.44232 6.45539 6.56651 6.61445 6.65326 6.81077 6.95415 7.32036 7.63433 7.78608 7.91989 8.29308 8.44873 9.20631 9.83973 10.40527 11.28107 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.036603 B = 0.003285 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.770903 B = 8521.814933 C = 8645.067195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.160 4.160 4 C -0.101 4.101 5 H 0.093 0.907 6 C -0.146 4.146 7 C 0.543 3.457 8 O -0.542 6.542 9 N -0.641 5.641 10 C 0.101 3.899 11 C -0.076 4.076 12 C 0.113 3.887 13 C -0.105 4.105 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.171 3.829 25 C -0.124 4.124 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.374 -0.932 -9.065 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.217 4.217 4 C -0.122 4.122 5 H 0.111 0.889 6 C -0.204 4.204 7 C 0.333 3.667 8 O -0.420 6.420 9 N -0.375 5.375 10 C -0.022 4.022 11 C -0.077 4.077 12 C -0.009 4.009 13 C -0.145 4.145 14 C 0.020 3.980 15 N -0.313 5.313 16 C -0.384 4.384 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.045 3.955 25 C -0.164 4.164 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.003 -0.631 -9.709 19.590 hybrid contribution 0.250 -0.156 0.910 0.956 sum -16.753 -0.787 -8.799 18.940 Atomic orbital electron populations 1.21925 0.95113 1.01711 1.01838 1.20895 0.94948 0.96820 0.96714 1.22077 1.04117 0.94759 1.00737 1.21311 0.91593 0.98455 1.00825 0.88861 1.21850 1.01663 0.94249 1.02590 1.20176 0.89362 0.77491 0.79658 1.90623 1.70441 1.45771 1.35201 1.49712 1.09985 1.55389 1.22429 1.23190 0.99289 0.96964 0.82718 1.21653 0.94062 0.98110 0.93843 1.23056 0.83255 1.01720 0.92884 1.21705 1.00324 0.93486 0.98962 1.20878 0.89902 0.92001 0.95173 1.44015 1.63203 1.04261 1.19802 1.19144 1.07550 1.19260 0.92395 0.91795 1.25039 0.95460 1.01266 0.97801 1.70021 1.18103 1.34489 1.32011 0.86382 0.77536 0.77623 0.85305 1.21033 1.21665 1.20920 1.20781 0.89832 0.87544 0.97293 1.22068 1.00643 0.95199 0.98507 0.92536 0.92448 0.92698 0.90741 0.89768 0.93171 0.93528 0.91974 0.91280 0.92282 0.90855 0.89966 0.90101 0.90435 0.93046 0.91757 0.92669 0.96408 0.93567 0.89197 0.96372 0.91922 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.84 37.16 0.33 -0.85 16 2 C -0.07 -0.79 2.15 -90.62 -0.19 -0.98 16 3 C -0.16 -1.84 8.87 37.16 0.33 -1.51 16 4 C -0.10 -1.09 2.19 -91.77 -0.20 -1.29 16 5 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 6 C -0.15 -1.29 8.72 37.16 0.32 -0.97 16 7 C 0.54 7.94 7.11 -10.99 -0.08 7.86 16 8 O -0.54 -9.77 14.43 5.56 0.08 -9.69 16 9 N -0.64 -9.06 3.41 -185.33 -0.63 -9.69 16 10 C 0.10 1.23 5.88 -8.38 -0.05 1.18 16 11 C -0.08 -1.15 0.83 -155.16 -0.13 -1.28 16 12 C 0.11 1.76 7.56 -8.21 -0.06 1.70 16 13 C -0.11 -1.75 5.26 -26.78 -0.14 -1.89 16 14 C 0.15 3.01 6.41 -3.65 -0.02 2.99 16 15 N -0.59 -14.23 2.96 -172.18 -0.51 -14.74 16 16 C -0.25 -6.79 9.56 -15.06 -0.14 -6.93 16 17 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 19 N -0.90 -25.62 11.21 55.49 0.62 -25.00 16 20 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.17 3.84 5.27 -3.64 -0.02 3.82 16 25 C -0.12 -2.11 5.31 -26.77 -0.14 -2.26 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.08 1.22 5.51 -51.92 -0.29 0.93 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.53 6.33 -51.93 -0.33 0.21 16 34 H 0.07 0.49 6.43 -51.92 -0.33 0.16 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 39 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 40 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 43 H 0.02 0.38 7.60 -51.93 -0.39 -0.01 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -29.99 363.32 -8.93 -38.92 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.65 Total: -1.10 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.29 Total: -0.42 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.52 Total: -49.43 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.99 -8.93 -38.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050685149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.402 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds