Wall clock time and date at job start Fri Apr 10 2020 20:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.46722 * 120.00332 * 2 1 3 5 5 H 1.09000 * 109.47148 * 299.99121 * 4 2 1 6 6 C 1.53007 * 109.46722 * 180.02562 * 4 2 1 7 7 C 1.50699 * 109.47509 * 59.99860 * 4 2 1 8 8 O 1.21278 * 119.99791 * 359.97438 * 7 4 2 9 9 N 1.34772 * 119.99811 * 179.97438 * 7 4 2 10 10 C 1.47671 * 134.45347 * 180.02562 * 9 7 4 11 11 C 1.53516 * 85.97810 * 204.29304 * 10 9 7 12 12 C 1.47671 * 134.46051 * 359.97384 * 9 7 4 13 13 C 1.52678 * 113.57151 * 91.01291 * 11 10 9 14 14 C 1.53341 * 109.10821 * 73.81618 * 13 11 10 15 15 N 1.46878 * 108.76222 * 52.40663 * 14 13 11 16 16 C 1.36942 * 120.46612 * 124.47515 * 15 14 13 17 17 H 1.07995 * 119.99541 * 331.55754 * 16 15 14 18 18 C 1.38808 * 119.99991 * 151.83908 * 16 15 14 19 19 N 1.31615 * 120.00070 * 342.22560 * 18 16 15 20 20 Si 1.86804 * 119.99766 * 162.22409 * 18 16 15 21 21 H 1.48496 * 109.46872 * 90.00294 * 20 18 16 22 22 H 1.48500 * 109.46904 * 210.00085 * 20 18 16 23 23 H 1.48496 * 109.47110 * 329.99821 * 20 18 16 24 24 C 1.46886 * 119.06696 * 304.73887 * 15 14 13 25 25 C 1.52669 * 113.56488 * 222.23108 * 11 10 9 26 26 H 1.09008 * 109.46696 * 299.99976 * 1 2 3 27 27 H 1.08993 * 109.47022 * 59.99377 * 1 2 3 28 28 H 1.09001 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46591 * 239.99794 * 2 1 3 30 30 H 1.08996 * 109.46652 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47164 * 300.00268 * 3 2 1 32 32 H 1.09004 * 109.46887 * 60.00193 * 3 2 1 33 33 H 1.09007 * 109.46866 * 180.02562 * 6 4 2 34 34 H 1.09000 * 109.46591 * 299.99462 * 6 4 2 35 35 H 1.09001 * 109.47199 * 59.99628 * 6 4 2 36 36 H 1.09000 * 113.79635 * 90.03199 * 10 9 7 37 37 H 1.09001 * 113.79504 * 318.55683 * 10 9 7 38 38 H 1.08995 * 113.78886 * 41.42966 * 12 9 7 39 39 H 1.09006 * 113.78660 * 269.96578 * 12 9 7 40 40 H 1.08994 * 109.53131 * 313.92958 * 13 11 10 41 41 H 1.08993 * 109.58843 * 193.73888 * 13 11 10 42 42 H 1.09003 * 109.58965 * 292.62160 * 14 13 11 43 43 H 1.09003 * 109.58355 * 172.18623 * 14 13 11 44 44 H 0.97006 * 119.99997 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.58454 * 175.04273 * 24 15 14 46 46 H 1.08997 * 109.59165 * 295.47702 * 24 15 14 47 47 H 1.09002 * 109.53084 * 46.08145 * 25 11 10 48 48 H 1.09006 * 109.52715 * 166.22401 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7208 1.2495 7 6 1.5376 -2.1421 1.2492 8 8 0.8400 -2.5386 0.3398 9 7 1.8636 -2.9721 2.2598 10 6 1.5612 -4.3819 2.5787 11 6 1.8222 -3.9943 4.0410 12 6 2.6670 -2.8365 3.4913 13 6 0.5692 -3.5383 4.7847 14 6 -0.3074 -4.7595 5.0871 15 7 0.5124 -5.7741 5.7621 16 6 0.1337 -6.2758 6.9787 17 1 -0.4519 -5.6697 7.6541 18 6 0.5074 -7.5611 7.3462 19 7 0.9083 -8.4171 6.4304 20 14 0.4412 -8.0759 9.1407 21 1 -0.8963 -8.6456 9.4432 22 1 1.4855 -9.0992 9.4009 23 1 0.6821 -6.8922 10.0044 24 6 1.7473 -6.2388 5.1166 25 6 2.6345 -5.0320 4.8118 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9333 -1.2351 2.1393 34 1 3.9336 -1.2344 0.3595 35 1 3.9330 0.3070 1.2497 36 1 2.2858 -5.0892 2.1753 37 1 0.5286 -4.6667 2.3769 38 1 2.5135 -1.8929 4.0147 39 1 3.7201 -3.0849 3.3588 40 1 0.0132 -2.8350 4.1648 41 1 0.8545 -3.0543 5.7187 42 1 -0.6998 -5.1673 4.1555 43 1 -1.1324 -4.4654 5.7359 44 1 1.1698 -9.3152 6.6873 45 1 2.2753 -6.9189 5.7850 46 1 1.5027 -6.7530 4.1872 47 1 3.4872 -5.3473 4.2104 48 1 2.9887 -4.5966 5.7463 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050685153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:17:26 Heat of formation + Delta-G solvation = 3.175202 kcal Electronic energy + Delta-G solvation = -25090.740103 eV Core-core repulsion = 21760.817534 eV Total energy + Delta-G solvation = -3329.922568 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76904 -38.92724 -36.16133 -35.72586 -32.58253 -31.30715 -30.41262 -29.61437 -27.50439 -26.94924 -26.11794 -24.52115 -23.77847 -22.37192 -21.03151 -20.36941 -18.84040 -18.03737 -17.02656 -16.41762 -16.05143 -15.47989 -14.86355 -14.72725 -14.36826 -14.13297 -13.87991 -13.64919 -13.59894 -13.18504 -12.94303 -12.75807 -12.39351 -12.22764 -12.19128 -12.13282 -11.86249 -11.74107 -11.52913 -11.42913 -11.11952 -11.01920 -10.83150 -10.72279 -10.67876 -10.49885 -10.28708 -10.13421 -9.86454 -9.65956 -9.63184 -9.20554 -8.48894 -8.44585 -6.67034 -5.80413 -3.22750 2.74467 2.97059 3.36327 3.43743 3.45775 4.36667 4.48602 4.50968 4.62745 4.72855 5.01335 5.06360 5.17455 5.21936 5.26487 5.32921 5.37316 5.47751 5.52792 5.53480 5.57576 5.62120 5.65451 5.68953 5.73069 5.80319 5.89162 5.93936 5.96856 6.05389 6.08256 6.14474 6.26088 6.26929 6.44145 6.45822 6.56429 6.60946 6.66368 6.80772 6.94979 7.32022 7.63235 7.78603 7.89829 8.30855 8.44574 9.20380 9.83944 10.40247 11.27867 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.037245 B = 0.003282 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.589765 B = 8529.577604 C = 8644.048717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.149 4.149 4 C -0.102 4.102 5 H 0.093 0.907 6 C -0.147 4.147 7 C 0.536 3.464 8 O -0.543 6.543 9 N -0.638 5.638 10 C 0.117 3.883 11 C -0.074 4.074 12 C 0.102 3.898 13 C -0.107 4.107 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.171 3.829 25 C -0.127 4.127 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.018 0.982 47 H 0.053 0.947 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 16.377 -8.845 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.123 4.123 5 H 0.111 0.889 6 C -0.204 4.204 7 C 0.326 3.674 8 O -0.422 6.422 9 N -0.373 5.373 10 C -0.005 4.005 11 C -0.075 4.075 12 C -0.020 4.020 13 C -0.147 4.147 14 C 0.020 3.980 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.045 3.955 25 C -0.167 4.167 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.036 0.964 47 H 0.071 0.929 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.739 16.120 -9.470 19.557 hybrid contribution 0.102 -0.309 0.901 0.958 sum 5.841 15.811 -8.569 18.908 Atomic orbital electron populations 1.22077 0.94689 1.04204 1.00702 1.20893 0.96597 0.95135 0.96748 1.21924 1.00977 0.95871 1.01816 1.21314 0.97271 0.92935 1.00768 0.88921 1.21858 0.93230 1.02692 1.02608 1.20299 0.80027 0.87145 0.79928 1.90618 1.38864 1.77448 1.35237 1.50129 1.51290 1.13360 1.22478 1.23255 1.02062 0.82299 0.92856 1.21991 0.96577 0.94936 0.94014 1.23459 0.95891 0.99961 0.82733 1.21755 0.95040 0.99131 0.98738 1.20882 0.92677 0.88750 0.95661 1.44003 1.21341 1.45477 1.20477 1.19162 1.32107 0.95331 0.91666 0.91805 1.25029 1.01677 0.95252 0.97613 1.70034 1.48654 1.04637 1.31234 0.86336 0.77402 0.78032 0.85240 1.21422 1.21575 1.20501 1.20671 0.86322 0.91823 0.96679 1.22057 0.97769 0.98023 0.98825 0.93556 0.93199 0.89756 0.90765 0.92455 0.92557 0.92713 0.91946 0.92301 0.91300 0.90044 0.90085 0.90470 0.89897 0.93022 0.91782 0.96393 0.92669 0.93634 0.89268 0.96420 0.92868 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.87 37.16 0.33 -1.51 16 2 C -0.07 -0.79 2.15 -90.62 -0.19 -0.98 16 3 C -0.15 -1.19 8.84 37.16 0.33 -0.86 16 4 C -0.10 -1.10 2.15 -91.77 -0.20 -1.30 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.15 -1.30 8.72 37.16 0.32 -0.97 16 7 C 0.54 7.83 7.09 -10.99 -0.08 7.75 16 8 O -0.54 -9.78 14.38 5.56 0.08 -9.70 16 9 N -0.64 -8.99 3.40 -180.18 -0.61 -9.61 16 10 C 0.12 1.83 7.62 -3.14 -0.02 1.80 16 11 C -0.07 -1.13 0.77 -154.41 -0.12 -1.25 16 12 C 0.10 1.23 6.02 -3.15 -0.02 1.21 16 13 C -0.11 -1.77 5.22 -26.72 -0.14 -1.91 16 14 C 0.15 2.99 6.38 -3.66 -0.02 2.97 16 15 N -0.59 -14.21 2.97 -172.51 -0.51 -14.72 16 16 C -0.25 -6.76 9.56 -15.06 -0.14 -6.91 16 17 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 19 N -0.90 -25.60 11.22 55.49 0.62 -24.98 16 20 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.17 3.83 5.21 -3.91 -0.02 3.80 16 25 C -0.13 -2.16 5.24 -26.98 -0.14 -2.30 16 26 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.22 5.51 -51.93 -0.29 0.94 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.53 6.12 -51.93 -0.32 0.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 36 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.08 1.41 7.41 -51.93 -0.38 1.02 16 38 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 40 H 0.05 0.80 8.01 -51.93 -0.42 0.39 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 43 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.09 2.27 5.98 -51.93 -0.31 1.96 16 46 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 47 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -30.02 362.60 -8.82 -38.84 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.63 Total: -1.05 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.20 Total: -0.45 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.50 Total: -49.31 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.02 -8.82 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050685153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.014 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds