Wall clock time and date at job start Fri Apr 10 2020 20:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.89089 * 2 1 4 4 C 1.55129 * 110.90796 * 124.09469 * 2 1 3 5 5 N 1.47421 * 104.72458 * 155.27192 * 4 2 1 6 6 C 1.34784 * 125.64843 * 155.81647 * 5 4 2 7 7 O 1.21283 * 119.99667 * 359.71852 * 6 5 4 8 8 C 1.50693 * 119.99987 * 179.72186 * 6 5 4 9 9 C 1.53001 * 109.47176 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47362 * 179.97438 * 9 8 6 11 11 C 1.54267 * 110.03267 * 292.16522 * 10 9 8 12 12 C 1.54888 * 104.19500 * 217.10241 * 11 10 9 13 13 C 1.54890 * 102.74639 * 37.94304 * 12 11 10 14 14 C 1.53879 * 110.03417 * 174.99646 * 10 9 8 15 15 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 16 16 C 1.54320 * 107.27210 * 1.28563 * 15 5 4 17 17 H 1.08996 * 110.72172 * 140.55457 * 16 15 5 18 18 N 1.46497 * 110.71903 * 263.83160 * 16 15 5 19 19 C 1.36945 * 119.99889 * 273.54606 * 18 16 15 20 20 H 1.07997 * 119.99945 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00096 * 180.02562 * 19 18 16 22 22 N 1.31631 * 120.00152 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00170 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46983 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46967 * 119.99590 * 23 21 19 26 26 H 1.48497 * 109.47317 * 239.99999 * 23 21 19 27 27 H 1.08998 * 109.46704 * 183.88260 * 1 2 3 28 28 H 1.08991 * 109.46921 * 303.87939 * 1 2 3 29 29 H 1.08994 * 109.46913 * 63.88086 * 1 2 3 30 30 H 1.09005 * 110.49746 * 36.43606 * 4 2 1 31 31 H 1.08997 * 110.34301 * 274.04013 * 4 2 1 32 32 H 1.09002 * 109.47106 * 299.99491 * 8 6 5 33 33 H 1.09003 * 109.47551 * 59.99749 * 8 6 5 34 34 H 1.09004 * 109.46992 * 299.99543 * 9 8 6 35 35 H 1.09003 * 109.47284 * 59.99343 * 9 8 6 36 36 H 1.09003 * 110.01850 * 53.60753 * 10 9 8 37 37 H 1.08997 * 110.48383 * 335.78561 * 11 10 9 38 38 H 1.09002 * 110.48213 * 98.42389 * 11 10 9 39 39 H 1.08997 * 110.76111 * 279.62905 * 12 11 10 40 40 H 1.09001 * 110.75271 * 156.25434 * 12 11 10 41 41 H 1.08998 * 110.48686 * 203.37454 * 13 12 11 42 42 H 1.09007 * 110.48977 * 80.73700 * 13 12 11 43 43 H 1.08997 * 110.03052 * 238.57487 * 14 10 9 44 44 H 1.09001 * 110.03070 * 359.95093 * 14 10 9 45 45 H 1.09010 * 109.88204 * 120.70275 * 15 5 4 46 46 H 1.09004 * 109.88434 * 241.70985 * 15 5 4 47 47 H 0.96995 * 120.00271 * 93.54166 * 18 16 15 48 48 H 0.96999 * 119.99785 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2434 0.7729 6 6 4.4477 -1.5622 1.5935 7 8 4.3009 -1.5010 2.7958 8 6 5.7712 -1.9947 1.0170 9 6 6.7487 -2.2967 2.1546 10 6 8.0923 -2.7363 1.5694 11 6 7.9439 -4.1067 0.8767 12 6 9.2719 -4.8382 1.1934 13 6 9.5643 -4.4003 2.6501 14 6 9.1226 -2.9230 2.6970 15 6 3.4674 -1.2739 -0.6964 16 6 2.0862 -0.8075 -1.2025 17 1 2.1922 -0.1692 -2.0796 18 7 1.2269 -1.9569 -1.4969 19 6 1.2816 -2.5554 -2.7274 20 1 1.9580 -2.1798 -3.4809 21 6 0.4670 -3.6441 -3.0065 22 7 -0.3577 -4.1016 -2.0883 23 14 0.5412 -4.4601 -4.6852 24 1 1.5421 -3.7618 -5.5312 25 1 0.9344 -5.8833 -4.5268 26 1 -0.7934 -4.3842 -5.3319 27 1 -0.3633 -1.0253 0.0696 28 1 -0.3633 0.5728 0.8531 29 1 -0.3633 0.4524 -0.9227 30 1 1.4525 -1.6787 1.3982 31 1 2.1516 -0.1809 2.0859 32 1 5.6290 -2.8909 0.4132 33 1 6.1741 -1.1966 0.3935 34 1 6.8910 -1.4007 2.7589 35 1 6.3456 -3.0949 2.7779 36 1 8.4497 -1.9935 0.8563 37 1 7.0980 -4.6545 1.2922 38 1 7.8256 -3.9794 -0.1994 39 1 10.0651 -4.5062 0.5237 40 1 9.1414 -5.9187 1.1337 41 1 10.6287 -4.4873 2.8682 42 1 8.9802 -4.9956 3.3520 43 1 9.9803 -2.2713 2.5306 44 1 8.6657 -2.6995 3.6610 45 1 4.2427 -0.5994 -1.0601 46 1 3.6678 -2.2885 -1.0408 47 1 0.6192 -2.2940 -0.8202 48 1 -0.9267 -4.8626 -2.2833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054346928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:24 Heat of formation + Delta-G solvation = -53.122606 kcal Electronic energy + Delta-G solvation = -24278.390917 eV Core-core repulsion = 20946.027092 eV Total energy + Delta-G solvation = -3332.363825 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.85499 -38.58353 -37.49123 -33.92227 -33.16986 -32.27508 -30.49494 -28.92729 -28.33561 -27.68139 -25.95101 -23.91093 -23.15454 -21.84278 -20.79615 -19.64913 -19.28016 -18.68662 -17.54092 -16.54959 -16.11639 -15.69855 -15.31783 -15.11234 -14.55726 -14.29134 -14.01898 -13.67374 -13.46550 -13.08746 -12.96398 -12.88839 -12.39450 -12.33440 -11.96301 -11.87814 -11.56729 -11.34121 -11.25481 -11.14003 -11.11964 -10.96697 -10.89707 -10.78412 -10.71962 -10.60099 -10.47512 -10.39141 -10.24820 -9.91982 -9.69329 -9.49751 -9.02976 -8.20222 -7.08464 -5.86085 -3.16187 2.97312 3.37542 3.38764 3.43435 3.45803 4.44446 4.50354 4.50749 4.57194 4.79525 5.05581 5.09505 5.14376 5.19028 5.31937 5.34913 5.41675 5.47416 5.51563 5.53540 5.57235 5.61182 5.64326 5.72238 5.76233 5.78733 5.83427 5.94487 5.95991 5.97778 6.05165 6.13970 6.19015 6.19897 6.25565 6.27195 6.35091 6.36666 6.41327 6.53128 6.67199 6.75803 6.92261 7.62084 7.95079 8.31840 8.51235 9.43832 9.98870 10.33615 11.36081 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013675 B = 0.003804 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.977156 B = 7358.576717 C = 8944.519169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.524 3.476 7 O -0.559 6.559 8 C -0.135 4.135 9 C -0.094 4.094 10 C -0.093 4.093 11 C -0.124 4.124 12 C -0.126 4.126 13 C -0.125 4.125 14 C -0.121 4.121 15 C 0.072 3.928 16 C 0.172 3.828 17 H 0.069 0.931 18 N -0.712 5.712 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.387 0.613 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.402 5.048 6.174 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.313 3.687 7 O -0.438 6.438 8 C -0.175 4.175 9 C -0.132 4.132 10 C -0.111 4.111 11 C -0.161 4.161 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.159 4.159 15 C -0.054 4.054 16 C 0.060 3.940 17 H 0.087 0.913 18 N -0.354 5.354 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.390 4.991 6.662 17.498 hybrid contribution -0.184 -0.705 -0.848 1.118 sum 15.207 4.286 5.814 16.835 Atomic orbital electron populations 1.21545 0.93439 1.02957 1.00946 1.22651 0.96926 0.98398 0.95423 0.90366 1.22283 0.83126 0.98250 0.97161 1.48501 1.11922 1.65857 1.07835 1.20371 0.85195 0.76968 0.86166 1.90651 1.83656 1.54674 1.14842 1.21656 0.92798 1.03122 0.99921 1.21459 0.92937 1.02143 0.96652 1.21821 0.95003 0.97351 0.96969 1.22507 0.97715 0.95509 1.00393 1.22497 0.97572 0.99869 0.96398 1.22359 1.00552 0.96277 0.97094 1.22206 0.98274 0.96464 0.98919 1.23260 1.01379 1.02110 0.78680 1.21197 0.88367 0.89837 0.94625 0.91286 1.42467 1.45423 1.32793 1.14705 1.19269 1.18484 1.09410 0.90530 0.90949 1.24753 0.98947 0.98906 0.97921 1.69672 1.27326 1.27496 1.33139 0.86136 0.77259 0.79221 0.83636 1.20491 1.21872 1.21827 0.91218 0.93679 0.92120 0.91357 0.91438 0.88880 0.89371 0.91467 0.91213 0.91098 0.91255 0.91567 0.91717 0.91769 0.92062 0.91710 0.92079 0.91587 0.92823 0.90519 0.77727 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.85 37.16 0.33 -1.74 16 2 C -0.11 -1.79 3.53 -88.35 -0.31 -2.10 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.11 1.93 6.35 -2.41 -0.02 1.92 16 5 N -0.61 -10.36 3.32 -170.38 -0.57 -10.92 16 6 C 0.52 8.90 7.85 -10.99 -0.09 8.82 16 7 O -0.56 -11.14 16.24 5.56 0.09 -11.05 16 8 C -0.14 -1.76 4.75 -27.89 -0.13 -1.89 16 9 C -0.09 -1.13 3.63 -26.73 -0.10 -1.23 16 10 C -0.09 -0.92 2.93 -89.50 -0.26 -1.18 16 11 C -0.12 -1.22 5.53 -25.07 -0.14 -1.36 16 12 C -0.13 -1.10 6.91 -24.74 -0.17 -1.27 16 13 C -0.13 -1.07 6.83 -25.07 -0.17 -1.24 16 14 C -0.12 -1.09 6.46 -25.61 -0.17 -1.26 16 15 C 0.07 1.19 6.22 -3.07 -0.02 1.17 16 16 C 0.17 3.11 3.36 -66.10 -0.22 2.89 16 17 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 18 N -0.71 -16.40 4.61 -51.66 -0.24 -16.64 16 19 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 23 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H 0.07 1.28 6.37 -51.93 -0.33 0.94 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 31 H 0.07 1.10 8.03 -51.93 -0.42 0.69 16 32 H 0.09 1.20 7.51 -51.93 -0.39 0.81 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 45 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 46 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 47 H 0.39 9.62 6.10 -40.82 -0.25 9.38 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -29.74 374.29 -9.98 -39.72 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.90 Total: 8.30 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.71 Total: -5.29 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.08 Total: -53.77 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.74 -9.98 -39.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054346928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.402 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds