Wall clock time and date at job start Fri Apr 10 2020 20:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.88613 * 2 1 4 4 C 1.55124 * 110.93764 * 124.07918 * 2 1 3 5 5 N 1.47424 * 104.72231 * 155.28961 * 4 2 1 6 6 C 1.34774 * 125.64703 * 155.81628 * 5 4 2 7 7 O 1.21279 * 120.00472 * 359.71551 * 6 5 4 8 8 C 1.50706 * 120.00020 * 179.71861 * 6 5 4 9 9 C 1.52997 * 109.47238 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46947 * 179.97438 * 9 8 6 11 11 C 1.54264 * 110.03558 * 292.16638 * 10 9 8 12 12 C 1.54889 * 104.19751 * 217.10723 * 11 10 9 13 13 C 1.54887 * 102.74943 * 37.93895 * 12 11 10 14 14 C 1.53880 * 110.03044 * 174.99630 * 10 9 8 15 15 C 1.47014 * 108.70372 * 335.55286 * 5 4 2 16 16 C 1.54330 * 107.27127 * 1.28745 * 15 5 4 17 17 H 1.08999 * 110.71773 * 263.65213 * 16 15 5 18 18 N 1.46498 * 110.72137 * 140.56135 * 16 15 5 19 19 C 1.36926 * 120.00440 * 86.45115 * 18 16 15 20 20 H 1.08005 * 120.00497 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00396 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00481 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99684 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47540 * 89.99695 * 23 21 19 25 25 H 1.48506 * 109.47091 * 209.99867 * 23 21 19 26 26 H 1.48503 * 109.46952 * 329.99842 * 23 21 19 27 27 H 1.09002 * 109.47390 * 183.87431 * 1 2 3 28 28 H 1.08996 * 109.47127 * 303.88214 * 1 2 3 29 29 H 1.09008 * 109.47326 * 63.87955 * 1 2 3 30 30 H 1.09002 * 110.49587 * 36.44513 * 4 2 1 31 31 H 1.09002 * 110.34335 * 274.05328 * 4 2 1 32 32 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 33 33 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 34 34 H 1.09001 * 109.46832 * 299.99686 * 9 8 6 35 35 H 1.09004 * 109.47261 * 59.99705 * 9 8 6 36 36 H 1.08999 * 110.01583 * 53.61334 * 10 9 8 37 37 H 1.08999 * 110.48255 * 335.78385 * 11 10 9 38 38 H 1.08990 * 110.48753 * 98.42871 * 11 10 9 39 39 H 1.08999 * 110.75468 * 279.63034 * 12 11 10 40 40 H 1.08999 * 110.75918 * 156.25387 * 12 11 10 41 41 H 1.08995 * 110.49071 * 203.38088 * 13 12 11 42 42 H 1.09000 * 110.59783 * 80.79244 * 13 12 11 43 43 H 1.08999 * 110.03396 * 238.56611 * 14 10 9 44 44 H 1.08999 * 110.03043 * 359.95762 * 14 10 9 45 45 H 1.08996 * 109.88656 * 120.70441 * 15 5 4 46 46 H 1.09001 * 109.88149 * 241.71546 * 15 5 4 47 47 H 0.97005 * 119.99308 * 266.45189 * 18 16 15 48 48 H 0.97003 * 120.00305 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0843 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4489 -1.5604 1.5928 7 8 4.3025 -1.4990 2.7951 8 6 5.7725 -1.9923 1.0160 9 6 6.7505 -2.2935 2.1533 10 6 8.0941 -2.7326 1.5677 11 6 7.9462 -4.1032 0.8753 12 6 9.2747 -4.8340 1.1917 13 6 9.5674 -4.3957 2.6482 14 6 9.1249 -2.9185 2.6950 15 6 3.4679 -1.2730 -0.6968 16 6 2.0861 -0.8074 -1.2026 17 1 1.4482 -1.6630 -1.4242 18 7 2.2278 0.0503 -2.3818 19 6 2.3024 -0.5083 -3.6297 20 1 2.2564 -1.5812 -3.7448 21 6 2.4361 0.3044 -4.7471 22 7 2.5083 -0.2325 -5.9466 23 14 2.5150 2.1601 -4.5482 24 1 3.9293 2.5804 -4.3807 25 1 1.9444 2.8119 -5.7544 26 1 1.7337 2.5633 -3.3513 27 1 -0.3634 -1.0253 0.0694 28 1 -0.3633 0.5729 0.8531 29 1 -0.3634 0.4525 -0.9228 30 1 1.4536 -1.6784 1.3985 31 1 2.1523 -0.1802 2.0858 32 1 5.6306 -2.8887 0.4124 33 1 6.1748 -1.1941 0.3921 34 1 6.8925 -1.3973 2.7573 35 1 6.3480 -3.0919 2.7768 36 1 8.4508 -1.9896 0.8544 37 1 7.1008 -4.6514 1.2911 38 1 7.8276 -3.9762 -0.2007 39 1 10.0675 -4.5016 0.5216 40 1 9.1448 -5.9146 1.1322 41 1 10.6318 -4.4821 2.8660 42 1 8.9854 -4.9907 3.3520 43 1 9.9823 -2.2665 2.5282 44 1 8.6681 -2.6952 3.6591 45 1 4.2425 -0.5982 -1.0609 46 1 3.6686 -2.2876 -1.0410 47 1 2.2687 1.0139 -2.2784 48 1 2.6014 0.3354 -6.7274 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054346929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:29 Heat of formation + Delta-G solvation = -52.479261 kcal Electronic energy + Delta-G solvation = -24087.168047 eV Core-core repulsion = 20754.832120 eV Total energy + Delta-G solvation = -3332.335927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98338 -38.62956 -37.58146 -34.21354 -33.26485 -32.44397 -31.08206 -28.97095 -28.41556 -27.89494 -26.13697 -23.94267 -23.03639 -21.31790 -20.81982 -20.21639 -19.68276 -18.85639 -17.60330 -16.78215 -16.30922 -15.83073 -15.45165 -15.22059 -14.71525 -14.28733 -14.07527 -13.50705 -13.45490 -13.27828 -13.22178 -12.90574 -12.64247 -12.41614 -12.37440 -12.05122 -11.72900 -11.48188 -11.41374 -11.28789 -11.17449 -11.14936 -10.94975 -10.82498 -10.75824 -10.68486 -10.64515 -10.43883 -10.37276 -10.06558 -9.70979 -9.63049 -9.06448 -8.38274 -7.44198 -5.88436 -3.26486 2.82639 3.19967 3.29894 3.32837 3.38981 4.40091 4.46066 4.48586 4.50752 4.67372 4.96375 4.98453 5.01504 5.04902 5.09549 5.28775 5.34150 5.41691 5.44635 5.47553 5.49622 5.53246 5.57904 5.65651 5.66800 5.70235 5.72794 5.75106 5.78399 5.85758 5.93441 6.00525 6.06278 6.09318 6.10169 6.15281 6.21186 6.27835 6.33760 6.36605 6.44105 6.50834 6.72932 7.75648 7.86061 8.30218 8.35623 9.06760 9.79098 9.97397 11.29168 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003563 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.016399 B = 7857.391707 C = 9131.192563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.114 3.886 5 N -0.616 5.616 6 C 0.526 3.474 7 O -0.557 6.557 8 C -0.137 4.137 9 C -0.093 4.093 10 C -0.094 4.094 11 C -0.123 4.123 12 C -0.126 4.126 13 C -0.125 4.125 14 C -0.121 4.121 15 C 0.074 3.926 16 C 0.182 3.818 17 H 0.074 0.926 18 N -0.736 5.736 19 C -0.253 4.253 20 H 0.092 0.908 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.882 3.118 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.364 0.636 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -5.143 15.788 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.099 0.901 4 C -0.009 4.009 5 N -0.350 5.350 6 C 0.315 3.685 7 O -0.436 6.436 8 C -0.177 4.177 9 C -0.131 4.131 10 C -0.113 4.113 11 C -0.161 4.161 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.159 4.159 15 C -0.052 4.052 16 C 0.071 3.929 17 H 0.092 0.908 18 N -0.378 5.378 19 C -0.382 4.382 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.575 5.575 23 Si 0.712 3.288 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.202 1.202 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.197 0.803 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.289 -5.279 16.221 18.965 hybrid contribution 0.132 1.375 -0.223 1.399 sum 8.421 -3.904 15.998 18.495 Atomic orbital electron populations 1.21628 0.93722 1.01899 1.02029 1.22694 0.96500 0.99585 0.94901 0.90078 1.22272 0.83071 0.98086 0.97509 1.48598 1.11994 1.66285 1.08085 1.20437 0.85139 0.76816 0.86117 1.90655 1.83527 1.54595 1.14817 1.21683 0.92677 1.03314 0.99993 1.21455 0.92997 1.02111 0.96566 1.21829 0.94965 0.97435 0.97050 1.22498 0.97631 0.95468 1.00473 1.22497 0.97636 0.99793 0.96422 1.22355 1.00597 0.96258 0.97048 1.22210 0.98338 0.96484 0.98851 1.23230 1.02744 1.01644 0.77549 1.21213 0.91957 0.93782 0.85993 0.90778 1.42709 1.88732 1.04043 1.02319 1.19057 1.43511 0.93986 0.81692 0.88989 1.24671 1.01458 0.97373 0.95102 1.69692 1.56189 1.34327 0.97336 0.86593 0.77934 0.87175 0.77068 1.20996 1.21625 1.20214 0.92500 0.93050 0.91474 0.91556 0.90986 0.88904 0.88974 0.91427 0.91292 0.90925 0.91417 0.91466 0.91612 0.91791 0.92048 0.91776 0.92008 0.91618 0.90879 0.91801 0.80259 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.31 37.16 0.35 -1.41 16 2 C -0.12 -1.71 3.26 -88.36 -0.29 -2.00 16 3 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 4 C 0.11 1.62 6.38 -2.41 -0.02 1.60 16 5 N -0.62 -9.42 3.32 -170.38 -0.57 -9.99 16 6 C 0.53 8.15 7.85 -10.98 -0.09 8.07 16 7 O -0.56 -10.17 16.24 5.56 0.09 -10.08 16 8 C -0.14 -1.68 4.75 -27.88 -0.13 -1.81 16 9 C -0.09 -1.05 3.63 -26.73 -0.10 -1.15 16 10 C -0.09 -0.90 2.93 -89.50 -0.26 -1.16 16 11 C -0.12 -1.13 5.53 -25.07 -0.14 -1.27 16 12 C -0.13 -1.04 6.91 -24.74 -0.17 -1.21 16 13 C -0.13 -1.01 6.83 -25.07 -0.17 -1.18 16 14 C -0.12 -1.06 6.46 -25.61 -0.17 -1.23 16 15 C 0.07 1.19 6.24 -3.07 -0.02 1.17 16 16 C 0.18 3.17 3.05 -66.10 -0.20 2.97 16 17 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 18 N -0.74 -15.89 4.98 -51.65 -0.26 -16.15 16 19 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 20 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 21 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -27.88 13.97 55.49 0.78 -27.11 16 23 Si 0.88 21.02 27.74 -169.99 -4.71 16.31 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 27 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 31 H 0.07 1.03 8.03 -51.93 -0.42 0.62 16 32 H 0.09 1.05 7.51 -51.93 -0.39 0.66 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.64 7.76 -51.93 -0.40 0.24 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 45 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.36 7.83 5.57 -40.82 -0.23 7.60 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -30.20 374.72 -9.68 -39.88 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.99 Total: 6.68 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.66 Total: -5.18 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.05 Total: -53.25 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.20 -9.68 -39.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054346929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.602 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds