Wall clock time and date at job start Fri Apr 10 2020 20:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.64429 * 2 1 4 4 C 1.54325 * 111.00565 * 236.91966 * 2 1 3 5 5 N 1.47025 * 107.26848 * 219.60281 * 4 2 1 6 6 C 1.34771 * 125.65014 * 178.85085 * 5 4 2 7 7 O 1.21286 * 120.00411 * 359.71212 * 6 5 4 8 8 C 1.50700 * 120.00201 * 179.71799 * 6 5 4 9 9 C 1.53005 * 109.47521 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47417 * 180.02562 * 9 8 6 11 11 C 1.54891 * 110.75763 * 71.66621 * 10 9 8 12 12 C 1.54267 * 104.19324 * 156.25900 * 11 10 9 13 13 C 1.53876 * 106.59870 * 336.39035 * 12 11 10 14 14 C 1.54261 * 106.59990 * 0.02562 * 13 12 11 15 15 C 1.47422 * 108.70130 * 358.58485 * 5 4 2 16 16 C 1.54915 * 104.83118 * 24.35774 * 15 5 4 17 17 H 1.08998 * 110.99964 * 204.87812 * 16 15 5 18 18 N 1.46495 * 111.00412 * 81.06306 * 16 15 5 19 19 C 1.36945 * 119.99857 * 86.45394 * 18 16 15 20 20 H 1.07998 * 119.99892 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99900 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00254 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47173 * 89.99874 * 23 21 19 25 25 H 1.48500 * 109.46966 * 210.00034 * 23 21 19 26 26 H 1.48494 * 109.46953 * 329.99949 * 23 21 19 27 27 H 1.08992 * 109.47488 * 296.86111 * 1 2 3 28 28 H 1.08999 * 109.46891 * 56.86469 * 1 2 3 29 29 H 1.09006 * 109.46883 * 176.85702 * 1 2 3 30 30 H 1.08995 * 109.99532 * 100.12736 * 4 2 1 31 31 H 1.09002 * 109.78149 * 338.96045 * 4 2 1 32 32 H 1.09000 * 109.47290 * 59.99782 * 8 6 5 33 33 H 1.09005 * 109.47003 * 299.99647 * 8 6 5 34 34 H 1.09000 * 109.47041 * 59.99600 * 9 8 6 35 35 H 1.09005 * 109.46669 * 299.99821 * 9 8 6 36 36 H 1.09001 * 110.66811 * 308.23225 * 10 9 8 37 37 H 1.09004 * 110.48613 * 37.58272 * 11 10 9 38 38 H 1.08994 * 110.48745 * 274.93690 * 11 10 9 39 39 H 1.08995 * 110.03032 * 217.10762 * 12 11 10 40 40 H 1.08998 * 110.03405 * 95.67701 * 12 11 10 41 41 H 1.08998 * 110.02768 * 119.28860 * 13 12 11 42 42 H 1.08994 * 110.03051 * 240.71540 * 13 12 11 43 43 H 1.09000 * 110.48928 * 142.28640 * 14 13 12 44 44 H 1.09001 * 110.48691 * 264.79667 * 14 13 12 45 45 H 1.09001 * 110.36874 * 143.19125 * 15 5 4 46 46 H 1.09003 * 110.36769 * 265.51885 * 15 5 4 47 47 H 0.96999 * 120.00416 * 266.45480 * 18 16 15 48 48 H 0.96994 * 120.00026 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2072 5 7 3.2495 -1.5470 -0.7352 6 6 4.0005 -2.3785 -1.4841 7 8 3.7299 -2.5527 -2.6535 8 6 5.1767 -3.0919 -0.8687 9 6 5.8534 -3.9662 -1.9264 10 6 7.0471 -4.6910 -1.3014 11 6 6.5694 -5.8011 -0.3326 12 6 7.7528 -6.7892 -0.2767 13 6 8.5538 -6.5898 -1.5753 14 6 7.8296 -5.4870 -2.3748 15 6 3.4652 -1.2446 0.6915 16 6 2.0789 -0.7934 1.2152 17 1 2.1819 -0.1495 2.0886 18 7 1.2294 -1.9486 1.5152 19 6 1.3000 -2.5498 2.7436 20 1 1.9822 -2.1726 3.4910 21 6 0.4947 -3.6441 3.0280 22 7 -0.3364 -4.1041 2.1169 23 14 0.5905 -4.4638 4.7038 24 1 -0.3821 -3.8227 5.6248 25 1 0.2668 -5.9067 4.5682 26 1 1.9630 -4.3137 5.2505 27 1 -0.3634 0.4643 0.9167 28 1 -0.3633 0.5617 -0.8605 29 1 -0.3633 -1.0262 -0.0563 30 1 2.3849 -0.0962 -1.9950 31 1 1.3217 -1.4702 -1.5823 32 1 4.8319 -3.7179 -0.0457 33 1 5.8905 -2.3586 -0.4932 34 1 6.1982 -3.3399 -2.7491 35 1 5.1398 -4.6995 -2.3023 36 1 7.7019 -3.9846 -0.7911 37 1 5.6797 -6.2934 -0.7255 38 1 6.3720 -5.3861 0.6557 39 1 7.3823 -7.8127 -0.2200 40 1 8.3811 -6.5708 0.5868 41 1 9.5708 -6.2746 -1.3419 42 1 8.5719 -7.5165 -2.1488 43 1 8.5517 -4.8431 -2.8769 44 1 7.1449 -5.9282 -3.0991 45 1 3.7992 -2.1363 1.2220 46 1 4.1929 -0.4408 0.8031 47 1 0.6169 -2.2876 0.8438 48 1 -0.8988 -4.8690 2.3155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054346930.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:32 Heat of formation + Delta-G solvation = -53.594942 kcal Electronic energy + Delta-G solvation = -24516.912346 eV Core-core repulsion = 21184.528039 eV Total energy + Delta-G solvation = -3332.384307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78188 -38.45553 -37.43276 -33.84594 -33.14482 -32.26998 -30.49538 -28.81661 -28.30642 -27.70262 -25.92864 -23.90735 -23.14769 -21.74089 -20.34360 -19.89162 -19.22651 -18.68741 -17.46012 -16.50369 -16.09793 -15.73659 -15.27634 -14.92539 -14.46525 -14.30633 -13.94505 -13.61207 -13.38024 -13.11455 -12.96632 -12.87821 -12.33468 -12.18865 -12.10291 -11.71366 -11.53473 -11.39751 -11.16179 -11.12972 -11.07299 -10.94489 -10.81381 -10.71219 -10.57309 -10.48217 -10.45892 -10.33881 -10.28733 -9.93775 -9.67309 -9.41079 -9.03622 -8.16040 -7.03986 -5.84286 -3.14218 3.07238 3.38185 3.43479 3.45694 3.45923 4.50505 4.51473 4.57254 4.65759 4.83791 5.11298 5.15534 5.18222 5.24904 5.33557 5.42801 5.48385 5.53559 5.55811 5.60779 5.62577 5.67047 5.67953 5.76691 5.78863 5.87710 5.91933 5.94400 6.02049 6.04084 6.16474 6.16958 6.20632 6.21854 6.29037 6.34912 6.36832 6.38439 6.50245 6.52098 6.65278 6.80985 6.92244 7.62309 8.01128 8.33551 8.60715 9.45362 10.01279 10.35909 11.37776 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.004597 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.482322 B = 6089.263543 C = 7987.025581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.604 5.604 6 C 0.527 3.473 7 O -0.559 6.559 8 C -0.134 4.134 9 C -0.093 4.093 10 C -0.092 4.092 11 C -0.124 4.124 12 C -0.125 4.125 13 C -0.124 4.124 14 C -0.120 4.120 15 C 0.069 3.931 16 C 0.171 3.829 17 H 0.070 0.930 18 N -0.710 5.710 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.928 5.928 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.387 0.613 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 2.852 -5.466 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.096 0.904 4 C -0.006 4.006 5 N -0.336 5.336 6 C 0.316 3.684 7 O -0.438 6.438 8 C -0.174 4.174 9 C -0.131 4.131 10 C -0.111 4.111 11 C -0.161 4.161 12 C -0.163 4.163 13 C -0.162 4.162 14 C -0.158 4.158 15 C -0.057 4.057 16 C 0.059 3.941 17 H 0.088 0.912 18 N -0.351 5.351 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.889 2.617 -5.945 15.333 hybrid contribution -0.155 -0.659 0.837 1.077 sum 13.734 1.958 -5.108 14.783 Atomic orbital electron populations 1.21597 0.93517 1.02956 1.00874 1.22485 0.97041 0.98516 0.95272 0.90352 1.21913 0.88067 0.94315 0.96332 1.48365 1.29468 1.44022 1.11782 1.20337 0.83697 0.78447 0.85892 1.90647 1.71973 1.64350 1.16850 1.21636 0.95716 0.99663 1.00359 1.21325 0.96234 0.98482 0.97076 1.22165 0.96361 0.96512 0.96035 1.22483 0.97948 0.95968 0.99714 1.22131 0.97119 0.99541 0.97514 1.22125 0.98939 0.98738 0.96407 1.22398 0.98787 0.96918 0.97662 1.23390 1.01078 1.00639 0.80635 1.21356 0.88659 0.89894 0.94210 0.91242 1.42390 1.45385 1.32279 1.15037 1.19214 1.18587 1.09150 0.90837 0.91035 1.24742 0.98971 0.98836 0.97867 1.69662 1.27305 1.27195 1.33381 0.86221 0.77565 0.78758 0.83786 1.21660 1.21802 1.20723 0.92131 0.93704 0.91281 0.92536 0.91631 0.88603 0.89559 0.91511 0.91158 0.90719 0.91295 0.91431 0.92064 0.92083 0.92182 0.92162 0.91929 0.91479 0.90162 0.92771 0.77713 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.73 37.16 0.32 -1.76 16 2 C -0.11 -1.76 3.40 -88.78 -0.30 -2.06 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.97 6.47 -3.06 -0.02 1.95 16 5 N -0.60 -10.58 3.33 -170.51 -0.57 -11.15 16 6 C 0.53 9.51 7.85 -10.99 -0.09 9.42 16 7 O -0.56 -11.74 16.31 5.55 0.09 -11.65 16 8 C -0.13 -1.90 4.60 -27.88 -0.13 -2.03 16 9 C -0.09 -1.22 4.00 -26.73 -0.11 -1.33 16 10 C -0.09 -1.00 2.87 -88.64 -0.25 -1.26 16 11 C -0.12 -1.40 5.70 -25.07 -0.14 -1.54 16 12 C -0.13 -1.24 6.80 -25.61 -0.17 -1.41 16 13 C -0.12 -1.13 6.80 -25.61 -0.17 -1.31 16 14 C -0.12 -1.19 6.27 -25.09 -0.16 -1.34 16 15 C 0.07 1.13 6.38 -2.53 -0.02 1.12 16 16 C 0.17 3.10 3.44 -65.78 -0.23 2.87 16 17 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 18 N -0.71 -16.50 4.74 -51.35 -0.24 -16.74 16 19 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -27.18 13.06 55.49 0.72 -26.46 16 23 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.30 6.37 -51.93 -0.33 0.97 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.23 7.78 -51.93 -0.40 0.83 16 32 H 0.10 1.41 7.35 -51.93 -0.38 1.03 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 38 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 45 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.39 9.85 6.09 -40.82 -0.25 9.60 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -30.20 374.27 -9.97 -40.16 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.88 Total: 9.19 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.71 Total: -5.54 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.09 Total: -54.35 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.20 -9.97 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054346930.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.432 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds