Wall clock time and date at job start Fri Apr 10 2020 20:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.64055 * 2 1 4 4 C 1.54323 * 110.72065 * 123.14215 * 2 1 3 5 5 N 1.47486 * 107.03754 * 140.69275 * 4 2 1 6 6 C 1.34778 * 125.59520 * 181.08732 * 5 4 2 7 7 O 1.21277 * 119.99734 * 359.95619 * 6 5 4 8 8 C 1.50696 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47022 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47437 * 295.00881 * 9 8 6 11 11 C 1.53002 * 109.47437 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47303 * 59.99340 * 11 10 9 13 13 C 1.52996 * 109.47413 * 300.00675 * 12 11 10 14 14 C 1.52995 * 109.47303 * 175.00221 * 9 8 6 15 15 C 1.47428 * 108.75727 * 1.02624 * 5 4 2 16 16 C 1.54915 * 104.83102 * 335.89255 * 15 5 4 17 17 H 1.09003 * 111.00447 * 278.93450 * 16 15 5 18 18 N 1.46494 * 111.00409 * 155.08482 * 16 15 5 19 19 C 1.36939 * 120.00197 * 92.80031 * 18 16 15 20 20 H 1.07998 * 119.99842 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00076 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00448 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46947 * 60.00175 * 23 21 19 25 25 H 1.48503 * 109.47272 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47156 * 300.00521 * 23 21 19 27 27 H 1.08999 * 109.47063 * 180.70207 * 1 2 3 28 28 H 1.08998 * 109.46828 * 300.70093 * 1 2 3 29 29 H 1.08998 * 109.46992 * 60.69756 * 1 2 3 30 30 H 1.09000 * 109.88693 * 260.15067 * 4 2 1 31 31 H 1.09005 * 109.88012 * 21.31682 * 4 2 1 32 32 H 1.08994 * 109.48030 * 300.00087 * 8 6 5 33 33 H 1.09004 * 109.46986 * 60.00494 * 8 6 5 34 34 H 1.09005 * 109.46604 * 55.00514 * 9 8 6 35 35 H 1.09005 * 109.46924 * 299.99437 * 10 9 8 36 36 H 1.09001 * 109.47380 * 59.99575 * 10 9 8 37 37 H 1.09005 * 109.46604 * 299.99633 * 11 10 9 38 38 H 1.09002 * 109.47155 * 179.97438 * 11 10 9 39 39 H 1.08997 * 109.47220 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.47052 * 60.00567 * 12 11 10 41 41 H 1.09005 * 109.46924 * 299.99971 * 13 12 11 42 42 H 1.09001 * 109.47380 * 179.97438 * 13 12 11 43 43 H 1.09002 * 109.47448 * 300.00350 * 14 9 8 44 44 H 1.09005 * 109.47052 * 60.00567 * 14 9 8 45 45 H 1.09000 * 110.36462 * 217.05803 * 15 5 4 46 46 H 1.08998 * 110.36847 * 94.73011 * 15 5 4 47 47 H 0.97002 * 119.99991 * 272.80507 * 18 16 15 48 48 H 0.97000 * 120.00645 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2495 -1.5470 0.7354 6 6 3.9996 -2.3796 1.4841 7 8 3.7283 -2.5543 2.6531 8 6 5.1756 -3.0932 0.8686 9 6 5.8512 -3.9688 1.9258 10 6 6.4446 -3.0802 3.0208 11 6 7.1207 -3.9558 4.0778 12 6 8.2363 -4.7741 3.4246 13 6 7.6429 -5.6627 2.3296 14 6 6.9667 -4.7876 1.2731 15 6 3.4653 -1.2447 -0.6913 16 6 2.0790 -0.7934 -1.2151 17 1 1.4469 -1.6529 -1.4383 18 7 2.2175 0.0727 -2.3885 19 6 2.1821 -0.4676 -3.6463 20 1 2.0517 -1.5321 -3.7733 21 6 2.3129 0.3531 -4.7581 22 7 2.4713 1.6506 -4.6035 23 14 2.2639 -0.3837 -6.4740 24 1 0.9615 -1.0658 -6.6827 25 1 2.4250 0.6956 -7.4811 26 1 3.3670 -1.3670 -6.6221 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3633 0.5247 0.8836 29 1 -0.3633 0.5030 -0.8962 30 1 2.3712 -0.0992 1.9991 31 1 1.3140 -1.4754 1.5781 32 1 4.8310 -3.7182 0.0449 33 1 5.8901 -2.3600 0.4941 34 1 5.1148 -4.6426 2.3640 35 1 7.1809 -2.4065 2.5826 36 1 5.6498 -2.4969 3.4859 37 1 6.3846 -4.6299 4.5160 38 1 7.5438 -3.3227 4.8576 39 1 8.7182 -5.3975 4.1776 40 1 8.9723 -4.1000 2.9863 41 1 6.9068 -6.3368 2.7679 42 1 8.4378 -6.2453 1.8639 43 1 6.5439 -5.4207 0.4930 44 1 7.7031 -4.1138 0.8349 45 1 3.7992 -2.1364 -1.2217 46 1 4.1930 -0.4409 -0.8029 47 1 2.3343 1.0289 -2.2745 48 1 2.5630 2.2241 -5.3804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054364091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:42 Heat of formation + Delta-G solvation = -58.632540 kcal Electronic energy + Delta-G solvation = -24356.167798 eV Core-core repulsion = 21023.565045 eV Total energy + Delta-G solvation = -3332.602753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07404 -38.60516 -37.27456 -34.08126 -32.90235 -32.26041 -30.78464 -30.72775 -27.86248 -27.47121 -25.52713 -23.95229 -22.68141 -21.93462 -21.23473 -19.93880 -19.74014 -18.80973 -17.23931 -16.70535 -16.05683 -15.43588 -15.23901 -14.93658 -14.33504 -14.22739 -14.05971 -13.74161 -13.47795 -13.11160 -13.03939 -12.93036 -12.69764 -12.35700 -12.21854 -12.03704 -11.80522 -11.65084 -11.55473 -11.17636 -11.12318 -11.04074 -10.98433 -10.74223 -10.63173 -10.49316 -10.30762 -10.29348 -10.09374 -9.98677 -9.80112 -9.41966 -9.03202 -8.31015 -7.12424 -5.88660 -3.19627 2.88085 3.25650 3.37274 3.42672 3.43084 4.46952 4.57850 4.60569 4.65832 4.80715 5.04203 5.07227 5.13289 5.18669 5.22127 5.29752 5.43639 5.44045 5.48313 5.52973 5.58220 5.61844 5.64529 5.72361 5.76751 5.82471 5.84161 5.92914 5.94859 6.00774 6.05626 6.10254 6.12913 6.20561 6.22392 6.23205 6.36937 6.44174 6.46270 6.47645 6.55060 6.62749 6.84640 7.59149 7.84086 8.28522 8.42668 9.40689 9.94274 10.29284 11.33122 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.003443 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.422145 B = 8129.501858 C = 9355.109542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.615 5.615 6 C 0.525 3.475 7 O -0.553 6.553 8 C -0.134 4.134 9 C -0.069 4.069 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.116 4.116 15 C 0.072 3.928 16 C 0.178 3.822 17 H 0.068 0.932 18 N -0.710 5.710 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.387 0.613 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.751 -9.844 13.606 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.349 5.349 6 C 0.315 3.685 7 O -0.432 6.432 8 C -0.174 4.174 9 C -0.087 4.087 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.054 4.054 16 C 0.065 3.935 17 H 0.086 0.914 18 N -0.349 5.349 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.221 0.779 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.632 -10.051 14.062 18.513 hybrid contribution 0.139 0.051 -1.118 1.128 sum 6.771 -10.000 12.944 17.703 Atomic orbital electron populations 1.21653 0.94001 1.01593 1.01861 1.22525 0.96474 0.99829 0.94751 0.89894 1.22033 0.87474 0.94358 0.96753 1.48711 1.29698 1.44073 1.12427 1.20361 0.83492 0.78706 0.85968 1.90621 1.71391 1.64658 1.16509 1.21726 0.96009 0.99878 0.99741 1.20893 0.96608 0.96511 0.94730 1.21711 1.00116 0.97792 0.96139 1.21498 0.97585 0.98488 0.97839 1.21555 0.97964 0.98422 0.97824 1.21497 0.99722 0.97800 0.96501 1.21603 0.97691 0.98371 0.97711 1.23504 1.02534 1.00702 0.78679 1.21357 0.91787 0.93699 0.86661 0.91408 1.42290 1.86271 1.06222 1.00129 1.19199 1.43082 0.92634 0.83132 0.91036 1.24760 1.02220 0.95419 0.97988 1.69645 1.55830 1.02681 1.29500 0.86267 0.77928 0.77803 0.84154 1.21142 1.21642 1.21133 0.92938 0.93275 0.91378 0.92117 0.91745 0.89000 0.89061 0.90570 0.92786 0.89934 0.92109 0.92423 0.92479 0.92181 0.92082 0.92235 0.91952 0.91894 0.91250 0.91301 0.77862 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.14 37.16 0.34 -1.57 16 2 C -0.12 -1.81 3.18 -88.79 -0.28 -2.09 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 4 C 0.12 1.76 6.50 -2.81 -0.02 1.74 16 5 N -0.62 -9.66 3.34 -170.14 -0.57 -10.23 16 6 C 0.53 8.17 7.57 -10.99 -0.08 8.08 16 7 O -0.55 -9.88 14.29 5.56 0.08 -9.80 16 8 C -0.13 -1.66 4.18 -27.88 -0.12 -1.77 16 9 C -0.07 -0.79 1.84 -90.62 -0.17 -0.95 16 10 C -0.12 -1.41 4.94 -26.73 -0.13 -1.55 16 11 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 12 C -0.12 -1.05 5.92 -26.74 -0.16 -1.21 16 13 C -0.12 -1.03 5.92 -26.76 -0.16 -1.19 16 14 C -0.12 -1.11 5.20 -26.76 -0.14 -1.25 16 15 C 0.07 1.19 6.39 -2.52 -0.02 1.17 16 16 C 0.18 3.25 3.16 -65.78 -0.21 3.04 16 17 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 18 N -0.71 -16.31 5.24 -51.35 -0.27 -16.58 16 19 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 23 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.95 7.80 -51.93 -0.41 0.55 16 32 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.17 5.95 -51.93 -0.31 0.87 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.39 9.53 7.76 -40.82 -0.32 9.21 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -28.62 371.17 -9.96 -38.58 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.96 Total: 7.82 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.54 Total: -5.76 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.11 Total: -52.74 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.62 -9.96 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054364091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.049 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds