Wall clock time and date at job start Fri Apr 10 2020 20:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34776 * 125.65202 * 178.90366 * 5 4 2 7 7 O 1.21276 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00214 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47357 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47347 * 295.00456 * 9 8 6 11 11 C 1.52999 * 109.47477 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.46929 * 59.99732 * 11 10 9 13 13 C 1.52990 * 109.47004 * 300.00165 * 12 11 10 14 14 C 1.52999 * 109.47412 * 60.00130 * 13 12 11 15 15 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 16 16 C 1.55118 * 104.94414 * 24.00601 * 15 5 4 17 17 H 1.09001 * 111.16500 * 205.13121 * 16 15 5 18 18 N 1.46502 * 110.93754 * 81.21163 * 16 15 5 19 19 C 1.36943 * 119.99898 * 92.95693 * 18 16 15 20 20 H 1.08000 * 119.99653 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99718 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00623 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99709 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46982 * 60.00518 * 23 21 19 25 25 H 1.48502 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47469 * 300.00385 * 23 21 19 27 27 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 28 28 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 29 29 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 30 30 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 31 31 H 1.08997 * 109.89082 * 99.87264 * 4 2 1 32 32 H 1.09007 * 109.47366 * 300.00239 * 8 6 5 33 33 H 1.09003 * 109.47156 * 59.99641 * 8 6 5 34 34 H 1.09001 * 109.47041 * 55.00078 * 9 8 6 35 35 H 1.09007 * 109.47123 * 299.99627 * 10 9 8 36 36 H 1.09005 * 109.47498 * 59.99443 * 10 9 8 37 37 H 1.08994 * 109.47218 * 300.00252 * 11 10 9 38 38 H 1.08996 * 109.47640 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.46812 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47061 * 59.99981 * 12 11 10 41 41 H 1.09000 * 109.47804 * 299.99830 * 13 12 11 42 42 H 1.09005 * 109.47242 * 180.02562 * 13 12 11 43 43 H 1.09003 * 109.47216 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.47265 * 59.99809 * 14 13 12 45 45 H 1.09003 * 110.36619 * 142.96814 * 15 5 4 46 46 H 1.09004 * 110.37083 * 265.18300 * 15 5 4 47 47 H 0.96998 * 120.00200 * 272.96262 * 18 16 15 48 48 H 0.96998 * 120.00478 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9915 -2.3822 -1.4932 7 8 3.7176 -2.5541 -2.6621 8 6 5.1671 -3.0995 -0.8814 9 6 5.8381 -3.9754 -1.9413 10 6 4.8723 -5.0792 -2.3768 11 6 5.5430 -5.9547 -3.4372 12 6 6.8081 -6.5856 -2.8519 13 6 7.7739 -5.4818 -2.4165 14 6 7.1031 -4.6063 -1.3561 15 6 3.4633 -1.2509 0.6855 16 6 2.0790 -0.7933 1.2152 17 1 2.1850 -0.1481 2.0874 18 7 1.2271 -1.9461 1.5179 19 6 1.2021 -2.4652 2.7849 20 1 1.8102 -2.0244 3.5610 21 6 0.3954 -3.5578 3.0714 22 7 -0.3452 -4.0952 2.1254 23 14 0.3608 -4.2654 4.7999 24 1 -0.0964 -3.2221 5.7528 25 1 -0.5726 -5.4196 4.8437 26 1 1.7241 -4.7172 5.1773 27 1 -0.3633 -1.0276 -0.0125 28 1 -0.3633 0.5246 -0.8837 29 1 -0.3634 0.5030 0.8962 30 1 1.3130 -1.4732 -1.5800 31 1 2.3716 -0.0992 -1.9990 32 1 5.8838 -2.3687 -0.5066 33 1 4.8224 -3.7255 -0.0583 34 1 6.1031 -3.3635 -2.8036 35 1 4.6072 -5.6911 -1.5146 36 1 3.9712 -4.6297 -2.7942 37 1 5.8078 -5.3426 -4.2993 38 1 4.8552 -6.7413 -3.7472 39 1 7.2857 -7.2097 -3.6072 40 1 6.5434 -7.1977 -1.9897 41 1 8.0387 -4.8696 -3.2786 42 1 8.6754 -5.9312 -1.9999 43 1 7.7914 -3.8202 -1.0455 44 1 6.8384 -5.2184 -0.4939 45 1 3.7960 -2.1446 1.2135 46 1 4.1946 -0.4504 0.7979 47 1 0.6808 -2.3418 0.8208 48 1 -0.9087 -4.8590 2.3256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054364092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:44 Heat of formation + Delta-G solvation = -54.754036 kcal Electronic energy + Delta-G solvation = -24921.434469 eV Core-core repulsion = 21588.999901 eV Total energy + Delta-G solvation = -3332.434569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95297 -38.53850 -37.19349 -33.85620 -32.74413 -32.13429 -30.63445 -30.48035 -27.85129 -27.53216 -25.37163 -23.85277 -22.54952 -22.16087 -21.25845 -19.65322 -19.22157 -18.68372 -17.47780 -16.47556 -15.85257 -15.34001 -15.22645 -14.55235 -14.47843 -14.11078 -13.95693 -13.73151 -13.60440 -13.03186 -12.98761 -12.55767 -12.41340 -12.21673 -12.07717 -11.86290 -11.70170 -11.55255 -11.43677 -11.11010 -11.02931 -10.92842 -10.85194 -10.72102 -10.46543 -10.33519 -10.30625 -10.15349 -9.97666 -9.94139 -9.66870 -9.24490 -9.03347 -8.15630 -7.04600 -5.84305 -3.14391 3.06370 3.38535 3.43504 3.44937 3.45497 4.51429 4.70399 4.73031 4.78721 4.90315 5.16566 5.17709 5.20886 5.31561 5.34967 5.43465 5.55357 5.57316 5.58304 5.62125 5.64040 5.69979 5.77124 5.81042 5.86845 5.95155 5.95860 6.01784 6.06197 6.19687 6.20080 6.22419 6.24806 6.27164 6.36245 6.37109 6.38929 6.52755 6.62289 6.65189 6.68053 6.81643 6.95044 7.61712 8.01141 8.33243 8.61211 9.45061 10.00707 10.35437 11.37547 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.004541 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.314686 B = 6164.635416 C = 7452.406151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.077 0.923 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.528 3.472 7 O -0.553 6.553 8 C -0.132 4.132 9 C -0.067 4.067 10 C -0.121 4.121 11 C -0.116 4.116 12 C -0.120 4.120 13 C -0.117 4.117 14 C -0.116 4.116 15 C 0.068 3.932 16 C 0.172 3.828 17 H 0.074 0.926 18 N -0.708 5.708 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.007 4.007 22 N -0.928 5.928 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.721 3.095 -7.056 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.006 4.006 5 N -0.337 5.337 6 C 0.318 3.682 7 O -0.432 6.432 8 C -0.172 4.172 9 C -0.086 4.086 10 C -0.159 4.159 11 C -0.153 4.153 12 C -0.158 4.158 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.058 4.058 16 C 0.059 3.941 17 H 0.092 0.908 18 N -0.348 5.348 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.222 0.778 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.596 2.876 -7.526 14.952 hybrid contribution -0.187 -0.588 0.869 1.066 sum 12.409 2.288 -6.656 14.266 Atomic orbital electron populations 1.21596 0.93526 1.03178 1.00576 1.22536 0.97101 0.98489 0.95440 0.90441 1.21907 0.87970 0.94314 0.96409 1.48387 1.29520 1.44022 1.11793 1.20273 0.83652 0.78399 0.85899 1.90615 1.71769 1.64075 1.16787 1.21704 0.95877 0.99529 1.00106 1.20871 0.94454 0.96027 0.97227 1.21710 0.99321 0.96252 0.98571 1.21493 0.96491 0.98868 0.98488 1.21559 0.96219 0.97579 1.00440 1.21495 0.97814 0.97275 0.98827 1.21607 0.96476 0.98911 0.98321 1.23440 1.01110 1.00627 0.80645 1.21392 0.88518 0.89911 0.94287 0.90827 1.42360 1.49566 1.32706 1.10198 1.19190 1.21397 1.09997 0.87344 0.91068 1.24739 0.99369 0.98700 0.97552 1.69648 1.30594 1.25517 1.31792 0.86295 0.77293 0.78495 0.84211 1.21192 1.21713 1.21254 0.91133 0.93849 0.92295 0.91660 0.92581 0.89518 0.88714 0.90783 0.92535 0.89836 0.92243 0.92372 0.92555 0.92105 0.92187 0.92353 0.92187 0.91829 0.90267 0.92780 0.77761 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.75 37.16 0.33 -1.77 16 2 C -0.12 -1.79 3.41 -88.79 -0.30 -2.09 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.95 6.46 -3.06 -0.02 1.93 16 5 N -0.60 -10.42 3.33 -170.39 -0.57 -10.98 16 6 C 0.53 9.29 7.57 -10.99 -0.08 9.20 16 7 O -0.55 -11.11 14.29 5.56 0.08 -11.03 16 8 C -0.13 -1.87 4.18 -27.89 -0.12 -1.99 16 9 C -0.07 -0.88 1.84 -90.63 -0.17 -1.05 16 10 C -0.12 -1.75 4.94 -26.73 -0.13 -1.88 16 11 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 12 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 13 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 14 C -0.12 -1.26 5.21 -26.73 -0.14 -1.40 16 15 C 0.07 1.11 6.39 -2.41 -0.02 1.09 16 16 C 0.17 3.09 3.49 -65.67 -0.23 2.86 16 17 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 18 N -0.71 -16.37 4.58 -51.24 -0.23 -16.61 16 19 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 23 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.21 7.80 -51.93 -0.41 0.81 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 34 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.45 5.95 -51.93 -0.31 1.14 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.39 7.48 -51.93 -0.39 1.01 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.39 9.84 6.35 -40.82 -0.26 9.58 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -29.48 367.76 -9.90 -39.38 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.82 Total: 9.84 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.60 Total: -6.26 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.08 Total: -54.00 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.48 -9.90 -39.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054364092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.371 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds