Wall clock time and date at job start Fri Apr 10 2020 20:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64397 * 2 1 4 4 C 1.54331 * 110.71900 * 236.66486 * 2 1 3 5 5 N 1.47022 * 107.27324 * 219.44440 * 4 2 1 6 6 C 1.34773 * 125.64726 * 178.96002 * 5 4 2 7 7 O 1.21277 * 120.00199 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99833 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47137 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46989 * 294.99786 * 9 8 6 11 11 C 1.53001 * 109.46989 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47552 * 60.00165 * 11 10 9 13 13 C 1.52998 * 109.47095 * 300.00157 * 12 11 10 14 14 C 1.52995 * 109.47552 * 174.99951 * 9 8 6 15 15 C 1.47425 * 108.70063 * 358.94282 * 5 4 2 16 16 C 1.54904 * 104.83734 * 24.12715 * 15 5 4 17 17 H 1.09000 * 111.03568 * 81.07630 * 16 15 5 18 18 N 1.46496 * 111.00766 * 204.91958 * 16 15 5 19 19 C 1.36945 * 119.99718 * 267.19494 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09001 * 109.46684 * 296.85622 * 1 2 3 28 28 H 1.09002 * 109.47079 * 56.85265 * 1 2 3 29 29 H 1.08998 * 109.47726 * 176.85758 * 1 2 3 30 30 H 1.09002 * 109.87899 * 338.86735 * 4 2 1 31 31 H 1.08998 * 109.88358 * 99.87200 * 4 2 1 32 32 H 1.09000 * 109.47389 * 299.99556 * 8 6 5 33 33 H 1.08996 * 109.47529 * 60.00152 * 8 6 5 34 34 H 1.08996 * 109.47520 * 54.99395 * 9 8 6 35 35 H 1.09003 * 109.47196 * 299.99720 * 10 9 8 36 36 H 1.09002 * 109.47160 * 60.00071 * 10 9 8 37 37 H 1.08996 * 109.47520 * 299.99609 * 11 10 9 38 38 H 1.09006 * 109.46764 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47499 * 179.97438 * 12 11 10 40 40 H 1.09008 * 109.46749 * 59.99374 * 12 11 10 41 41 H 1.09003 * 109.46880 * 299.99972 * 13 12 11 42 42 H 1.09002 * 109.47416 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46953 * 300.00204 * 14 9 8 44 44 H 1.09006 * 109.47264 * 59.99376 * 14 9 8 45 45 H 1.08998 * 110.36657 * 265.28712 * 15 5 4 46 46 H 1.09000 * 110.36657 * 142.96590 * 15 5 4 47 47 H 0.96996 * 120.00499 * 87.19225 * 18 16 15 48 48 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2444 -1.5521 -0.7365 6 6 3.9920 -2.3864 -1.4858 7 8 3.7192 -2.5607 -2.6546 8 6 5.1668 -3.1027 -0.8714 9 6 5.8394 -3.9800 -1.9292 10 6 4.8743 -5.0846 -2.3644 11 6 5.5467 -5.9614 -3.4227 12 6 6.8110 -6.5913 -2.8350 13 6 7.7761 -5.4867 -2.3997 14 6 7.1035 -4.6098 -1.3409 15 6 3.4632 -1.2488 0.6895 16 6 2.0790 -0.7935 1.2151 17 1 1.4448 -1.6509 1.4406 18 7 2.2215 0.0735 2.3873 19 6 2.1868 -0.4654 3.6458 20 1 2.0540 -1.5295 3.7740 21 6 2.3224 0.3560 4.7565 22 7 2.4838 1.6529 4.6002 23 14 2.2743 -0.3790 6.4731 24 1 2.4409 0.7008 7.4788 25 1 0.9702 -1.0567 6.6851 26 1 3.3745 -1.3656 6.6201 27 1 -0.3633 0.4643 0.9169 28 1 -0.3633 0.5619 -0.8604 29 1 -0.3634 -1.0261 -0.0563 30 1 1.3128 -1.4784 -1.5752 31 1 2.3715 -0.1060 -1.9987 32 1 5.8833 -2.3713 -0.4975 33 1 4.8213 -3.7270 -0.0474 34 1 6.1054 -3.3693 -2.7920 35 1 4.6083 -5.6953 -1.5016 36 1 3.9737 -4.6359 -2.7836 37 1 5.8124 -5.3505 -4.2854 38 1 4.8589 -6.7481 -3.7330 39 1 7.2898 -7.2163 -3.5888 40 1 6.5453 -7.2022 -1.9722 41 1 8.0418 -4.8757 -3.2624 42 1 8.6767 -5.9354 -1.9806 43 1 7.7910 -3.8229 -1.0308 44 1 6.8374 -5.2205 -0.4781 45 1 4.1931 -0.4467 0.7991 46 1 3.7959 -2.1407 1.2204 47 1 2.3405 1.0292 2.2721 48 1 2.5782 2.2269 5.3764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054364093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:47 Heat of formation + Delta-G solvation = -58.658687 kcal Electronic energy + Delta-G solvation = -24377.035446 eV Core-core repulsion = 21044.431559 eV Total energy + Delta-G solvation = -3332.603887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.09012 -38.61346 -37.27802 -34.09082 -32.90286 -32.26526 -30.78106 -30.72527 -27.86699 -27.47959 -25.52507 -23.95356 -22.68244 -21.93722 -21.23010 -19.91660 -19.77467 -18.81690 -17.23818 -16.71353 -16.00933 -15.43213 -15.36263 -14.89353 -14.27285 -14.23013 -13.98959 -13.85800 -13.54952 -13.11305 -12.98944 -12.88516 -12.64079 -12.41585 -12.17286 -12.12098 -11.79137 -11.68348 -11.51808 -11.17079 -11.13197 -11.02936 -10.98680 -10.74281 -10.63529 -10.49275 -10.31775 -10.28680 -10.08720 -9.98943 -9.80126 -9.41321 -9.03821 -8.30874 -7.12410 -5.88701 -3.19681 2.87676 3.26321 3.37296 3.42701 3.43101 4.46907 4.57934 4.60699 4.65685 4.80357 5.05347 5.06320 5.13339 5.18290 5.22413 5.29725 5.43831 5.44170 5.48432 5.52881 5.57600 5.61936 5.63475 5.73983 5.76519 5.82366 5.83787 5.93230 5.94809 6.01033 6.05695 6.10521 6.12860 6.20901 6.21776 6.23543 6.37012 6.45052 6.45271 6.47712 6.56041 6.63080 6.84736 7.59156 7.83908 8.28550 8.42593 9.40698 9.94256 10.29256 11.33081 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.003487 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.220855 B = 8028.600985 C = 9226.811801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.615 5.615 6 C 0.526 3.474 7 O -0.552 6.552 8 C -0.134 4.134 9 C -0.069 4.069 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.116 4.116 15 C 0.072 3.928 16 C 0.177 3.823 17 H 0.068 0.932 18 N -0.710 5.710 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.387 0.613 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -11.081 -13.199 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.315 3.685 7 O -0.432 6.432 8 C -0.173 4.173 9 C -0.087 4.087 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.054 4.054 16 C 0.065 3.935 17 H 0.086 0.914 18 N -0.349 5.349 19 C -0.381 4.381 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.221 0.779 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.655 -11.290 -13.655 18.599 hybrid contribution 0.148 0.063 1.111 1.122 sum 5.804 -11.227 -12.544 17.807 Atomic orbital electron populations 1.21657 0.94000 1.01477 1.01996 1.22525 0.96474 0.99801 0.94743 0.89863 1.21942 0.87597 0.94343 0.96781 1.48589 1.29813 1.43919 1.12492 1.20358 0.83533 0.78678 0.85948 1.90621 1.71511 1.64421 1.16603 1.21725 0.96100 0.99649 0.99874 1.20894 0.94520 0.95963 0.97369 1.21713 0.99375 0.96220 0.98453 1.21497 0.96543 0.98833 0.98539 1.21555 0.96205 0.97600 1.00403 1.21515 0.97866 0.97241 0.98896 1.21621 0.96517 0.98999 0.98237 1.23508 1.02536 1.00703 0.78702 1.21358 0.91795 0.93691 0.86685 0.91404 1.42292 1.86218 1.06261 1.00144 1.19200 1.43038 0.92682 0.83134 0.91034 1.24761 1.02208 0.95427 0.97991 1.69649 1.55791 1.02687 1.29528 0.86265 0.77927 0.77797 0.84158 1.21641 1.21138 1.21137 0.91340 0.93265 0.92961 0.91808 0.92191 0.89041 0.89010 0.90588 0.92758 0.89926 0.92122 0.92418 0.92482 0.92173 0.92084 0.92240 0.91967 0.91874 0.91293 0.91245 0.77862 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.16 37.16 0.34 -1.57 16 2 C -0.12 -1.80 3.20 -88.78 -0.28 -2.09 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 4 C 0.12 1.76 6.46 -3.06 -0.02 1.74 16 5 N -0.61 -9.65 3.33 -170.52 -0.57 -10.22 16 6 C 0.53 8.17 7.57 -10.99 -0.08 8.08 16 7 O -0.55 -9.87 14.29 5.56 0.08 -9.79 16 8 C -0.13 -1.65 4.18 -27.88 -0.12 -1.77 16 9 C -0.07 -0.79 1.84 -90.62 -0.17 -0.95 16 10 C -0.12 -1.41 4.94 -26.73 -0.13 -1.54 16 11 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 12 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 13 C -0.12 -1.03 5.92 -26.70 -0.16 -1.19 16 14 C -0.12 -1.11 5.21 -26.71 -0.14 -1.25 16 15 C 0.07 1.18 6.38 -2.53 -0.02 1.17 16 16 C 0.18 3.24 3.16 -65.78 -0.21 3.04 16 17 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 18 N -0.71 -16.30 5.24 -51.35 -0.27 -16.57 16 19 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 23 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 30 H 0.06 0.95 7.76 -51.93 -0.40 0.54 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 34 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 47 H 0.39 9.53 7.76 -40.82 -0.32 9.21 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -28.61 371.07 -9.96 -38.57 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.95 Total: 7.82 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.55 Total: -5.77 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.11 Total: -52.72 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.61 -9.96 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054364093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.086 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds