Wall clock time and date at job start Fri Apr 10 2020 20:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.64200 * 2 1 4 4 C 1.54324 * 110.72119 * 123.13858 * 2 1 3 5 5 N 1.47315 * 107.12124 * 140.42893 * 4 2 1 6 6 C 1.34783 * 125.61366 * 181.11421 * 5 4 2 7 7 O 1.21286 * 119.99533 * 175.26157 * 6 5 4 8 8 C 1.50699 * 120.00106 * 355.26299 * 6 5 4 9 9 C 1.54242 * 108.89575 * 268.28679 * 8 6 5 10 10 C 1.50470 * 108.52491 * 159.26375 * 9 8 6 11 11 C 1.54063 * 112.50185 * 94.15010 * 10 9 8 12 12 C 1.54068 * 112.81416 * 318.28805 * 11 10 9 13 13 C 1.50467 * 112.49553 * 318.27740 * 12 11 10 14 14 C 1.45544 * 108.89484 * 145.40279 * 8 6 5 15 15 C 1.47423 * 108.73515 * 1.29898 * 5 4 2 16 16 C 1.54902 * 104.83434 * 335.71874 * 15 5 4 17 17 H 1.09001 * 111.00157 * 278.93203 * 16 15 5 18 18 N 1.46505 * 111.00292 * 155.08319 * 16 15 5 19 19 C 1.36932 * 120.00172 * 92.80405 * 18 16 15 20 20 H 1.08001 * 119.99830 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00172 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99861 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46858 * 90.00314 * 23 21 19 25 25 H 1.48504 * 109.47313 * 209.99715 * 23 21 19 26 26 H 1.48492 * 109.47230 * 329.99973 * 23 21 19 27 27 H 1.09000 * 109.47392 * 180.70351 * 1 2 3 28 28 H 1.09001 * 109.47338 * 60.70532 * 1 2 3 29 29 H 1.08996 * 109.47479 * 300.70323 * 1 2 3 30 30 H 1.09004 * 109.88413 * 259.97708 * 4 2 1 31 31 H 1.09003 * 109.88203 * 21.14089 * 4 2 1 32 32 H 1.09002 * 108.87148 * 26.80275 * 8 6 5 33 33 H 1.08999 * 109.62853 * 278.97919 * 9 8 6 34 34 H 1.09006 * 109.62329 * 39.55222 * 9 8 6 35 35 H 1.09003 * 108.87979 * 333.37213 * 10 9 8 36 36 H 1.08998 * 108.79906 * 214.88004 * 10 9 8 37 37 H 1.08997 * 108.81779 * 197.42131 * 11 10 9 38 38 H 1.09007 * 108.80996 * 79.14398 * 11 10 9 39 39 H 1.09007 * 108.87405 * 197.50318 * 12 11 10 40 40 H 1.08999 * 108.80018 * 79.00516 * 12 11 10 41 41 H 1.08999 * 109.63542 * 334.44822 * 13 12 11 42 42 H 1.09001 * 109.79158 * 213.95912 * 13 12 11 43 43 H 1.08998 * 108.89770 * 303.44413 * 14 8 6 44 44 H 1.08999 * 108.89565 * 61.93530 * 14 8 6 45 45 H 1.09007 * 110.36881 * 216.87672 * 15 5 4 46 46 H 1.09002 * 110.45343 * 94.60656 * 15 5 4 47 47 H 0.97001 * 119.99544 * 272.79672 * 18 16 15 48 48 H 0.97001 * 119.99839 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2444 -1.5519 0.7365 6 6 3.9922 -2.3861 1.4859 7 8 4.8820 -3.0301 0.9717 8 6 3.7226 -2.5185 2.9627 9 6 4.6048 -1.5081 3.7241 10 6 3.9988 -1.2717 5.0809 11 6 4.6056 -2.1832 6.1647 12 6 4.8173 -3.6298 5.6787 13 6 3.6627 -4.1359 4.8572 14 6 3.9781 -3.8931 3.3670 15 6 3.4631 -1.2486 -0.6895 16 6 2.0789 -0.7935 -1.2150 17 1 1.4452 -1.6512 -1.4402 18 7 2.2215 0.0735 -2.3874 19 6 2.1868 -0.4654 -3.6458 20 1 2.0547 -1.5296 -3.7740 21 6 2.3213 0.3561 -4.7565 22 7 2.4817 1.6531 -4.6002 23 14 2.2747 -0.3791 -6.4731 24 1 0.8739 -0.3975 -6.9658 25 1 3.1097 0.4421 -7.3863 26 1 2.8034 -1.7661 -6.4321 27 1 -0.3634 -1.0276 0.0126 28 1 -0.3634 0.5028 -0.8962 29 1 -0.3634 0.5247 0.8836 30 1 2.3740 -0.0989 1.9980 31 1 1.3129 -1.4731 1.5801 32 1 2.6752 -2.2837 3.1523 33 1 5.6105 -1.9129 3.8377 34 1 4.6454 -0.5689 3.1724 35 1 2.9260 -1.4563 5.0251 36 1 4.1629 -0.2315 5.3625 37 1 3.9390 -2.1959 7.0270 38 1 5.5669 -1.7715 6.4724 39 1 4.9441 -4.2781 6.5458 40 1 5.7237 -3.6683 5.0746 41 1 2.7548 -3.5987 5.1315 42 1 3.5242 -5.2027 5.0330 43 1 3.3621 -4.5591 2.7628 44 1 5.0276 -4.1250 3.1860 45 1 3.7959 -2.1407 -1.2204 46 1 4.1935 -0.4472 -0.8009 47 1 2.3403 1.0293 -2.2721 48 1 2.5761 2.2271 -5.3765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054501082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:54 Heat of formation + Delta-G solvation = -49.010940 kcal Electronic energy + Delta-G solvation = -24749.753999 eV Core-core repulsion = 21417.568470 eV Total energy + Delta-G solvation = -3332.185529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46630 -38.58153 -37.20367 -34.14429 -32.76934 -32.44697 -32.09256 -30.70498 -27.83553 -26.18953 -25.38400 -24.88158 -23.80082 -21.79849 -20.86875 -19.91398 -19.50768 -18.90325 -17.27268 -16.92523 -16.18096 -15.87011 -15.07842 -14.85011 -14.52798 -14.37539 -13.82309 -13.65632 -13.48657 -13.22988 -13.09968 -12.94615 -12.77945 -12.69732 -12.42048 -12.26095 -11.87742 -11.63356 -11.31410 -11.10562 -11.03428 -10.91300 -10.81002 -10.79454 -10.71940 -10.63361 -10.55044 -10.41391 -10.23650 -9.95645 -9.76118 -9.39866 -8.99411 -8.29813 -7.07046 -5.84032 -3.14371 2.85653 3.24045 3.41206 3.47220 3.48719 4.37872 4.41617 4.54248 4.59187 4.80443 4.86032 4.90884 4.94864 5.04569 5.11024 5.14745 5.19220 5.27408 5.43212 5.51595 5.56596 5.62188 5.64080 5.69317 5.74136 5.83816 5.85677 5.88325 5.94572 5.96050 5.97756 6.01839 6.03393 6.11575 6.19088 6.22657 6.26417 6.28281 6.42634 6.51767 6.59146 6.65729 6.90476 7.65788 7.84551 8.33398 8.43415 9.45689 9.98888 10.33996 11.37994 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003253 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.602475 B = 8605.210059 C = 9012.811475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.109 3.891 5 N -0.614 5.614 6 C 0.524 3.476 7 O -0.548 6.548 8 C -0.094 4.094 9 C -0.103 4.103 10 C -0.117 4.117 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.079 3.921 16 C 0.178 3.822 17 H 0.067 0.933 18 N -0.709 5.709 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.387 0.613 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -6.104 22.476 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.015 4.015 5 N -0.347 5.347 6 C 0.312 3.688 7 O -0.425 6.425 8 C -0.115 4.115 9 C -0.141 4.141 10 C -0.154 4.154 11 C -0.154 4.154 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.046 4.046 16 C 0.065 3.935 17 H 0.085 0.915 18 N -0.349 5.349 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.221 0.779 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.302 -6.576 22.040 23.002 hybrid contribution 0.071 0.076 -0.980 0.985 sum -0.230 -6.501 21.060 22.042 Atomic orbital electron populations 1.21660 0.93965 1.01580 1.01927 1.22513 0.96417 0.99896 0.94718 0.89781 1.22153 0.87534 0.94405 0.97370 1.48646 1.29880 1.43859 1.12346 1.20447 0.81354 0.78479 0.88490 1.90679 1.32522 1.45281 1.74046 1.20248 1.01660 0.97932 0.91707 1.21247 0.99365 0.98272 0.95238 1.21325 1.00438 0.99350 0.94319 1.21913 1.00777 0.94854 0.97855 1.21369 0.99073 0.95774 0.99655 1.21295 0.98685 1.00770 0.94336 1.20376 1.03437 0.94925 0.95986 1.23394 1.01641 1.00794 0.78773 1.21370 0.92005 0.93518 0.86604 0.91494 1.42280 1.86206 1.06212 1.00185 1.19257 1.42641 0.92722 0.83123 0.90996 1.24753 1.02304 0.95448 0.97997 1.69657 1.56112 1.02677 1.29342 0.86181 0.77444 0.78129 0.84388 1.21618 1.21707 1.20623 0.92931 0.91325 0.93280 0.91902 0.91701 0.89754 0.90812 0.91489 0.91844 0.91967 0.92368 0.92364 0.92459 0.91843 0.91630 0.91759 0.92066 0.90712 0.91147 0.91651 0.77901 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.14 37.15 0.34 -1.45 16 2 C -0.12 -1.73 3.18 -88.79 -0.28 -2.01 16 3 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 4 C 0.11 1.40 5.63 -2.90 -0.02 1.38 16 5 N -0.61 -9.81 3.33 -170.28 -0.57 -10.38 16 6 C 0.52 8.43 6.66 -10.98 -0.07 8.35 16 7 O -0.55 -11.00 16.39 5.55 0.09 -10.90 16 8 C -0.09 -1.08 1.73 -94.64 -0.16 -1.24 16 9 C -0.10 -1.05 4.97 -27.34 -0.14 -1.19 16 10 C -0.12 -0.92 5.31 -27.44 -0.15 -1.07 16 11 C -0.12 -0.84 5.85 -25.62 -0.15 -0.99 16 12 C -0.12 -0.94 5.32 -27.44 -0.15 -1.09 16 13 C -0.11 -0.93 5.61 -27.35 -0.15 -1.09 16 14 C -0.11 -1.20 4.12 -29.60 -0.12 -1.32 16 15 C 0.08 1.52 6.62 -2.53 -0.02 1.51 16 16 C 0.18 3.41 3.16 -65.78 -0.21 3.20 16 17 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 18 N -0.71 -17.04 5.24 -51.35 -0.27 -17.31 16 19 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.73 7.55 -51.93 -0.39 0.33 16 32 H 0.08 0.84 6.25 -51.93 -0.32 0.52 16 33 H 0.07 0.80 6.97 -51.93 -0.36 0.44 16 34 H 0.07 0.73 7.97 -51.93 -0.41 0.32 16 35 H 0.06 0.47 6.63 -51.93 -0.34 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 41 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.07 0.93 7.09 -51.93 -0.37 0.56 16 45 H 0.07 1.49 7.99 -51.92 -0.41 1.08 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.39 9.81 7.76 -40.82 -0.32 9.50 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -30.77 365.13 -9.73 -40.50 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.67 Total: 6.29 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.52 Total: -4.15 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.11 Total: -54.38 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.77 -9.73 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054501082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.508 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds