Wall clock time and date at job start Fri Apr 10 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47210 * 300.00259 * 9 8 6 11 11 C 1.53003 * 109.47198 * 60.00052 * 9 8 6 12 12 C 1.53001 * 109.47457 * 180.02562 * 9 8 6 13 13 C 1.53000 * 117.49972 * 248.62608 * 12 9 8 14 14 C 1.52995 * 117.50179 * 180.02562 * 12 9 8 15 15 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 5 4 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 5 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 5 19 19 C 1.36935 * 119.99899 * 273.54487 * 18 16 15 20 20 H 1.08003 * 120.00376 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00278 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99732 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00230 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47196 * 90.00156 * 23 21 19 25 25 H 1.48499 * 109.46924 * 210.00314 * 23 21 19 26 26 H 1.48498 * 109.47142 * 329.99876 * 23 21 19 27 27 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 28 28 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 29 29 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 30 30 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 31 31 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 32 32 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 33 33 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 34 34 H 1.09000 * 109.46866 * 60.00139 * 10 9 8 35 35 H 1.08999 * 109.47005 * 180.02562 * 10 9 8 36 36 H 1.08992 * 109.47234 * 299.99959 * 10 9 8 37 37 H 1.09005 * 109.46643 * 59.99980 * 11 9 8 38 38 H 1.08999 * 109.47271 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47496 * 300.00238 * 11 9 8 40 40 H 1.09000 * 115.54325 * 34.32725 * 12 9 8 41 41 H 1.08998 * 117.49800 * 359.97438 * 13 12 9 42 42 H 1.09004 * 117.49862 * 145.01510 * 13 12 9 43 43 H 1.09002 * 117.49906 * 214.97746 * 14 12 9 44 44 H 1.08999 * 117.49917 * 359.97438 * 14 12 9 45 45 H 1.08999 * 110.36956 * 142.96999 * 15 5 4 46 46 H 1.09001 * 110.36709 * 265.18192 * 15 5 4 47 47 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 48 48 H 0.96994 * 120.00134 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 6 5.8310 -3.9850 -1.9437 10 6 4.8224 -5.0092 -2.4676 11 6 6.3146 -3.1079 -3.1004 12 6 7.0239 -4.7156 -1.3239 13 6 8.4225 -4.3087 -1.7919 14 6 7.8294 -5.6488 -2.2300 15 6 3.4656 -1.2541 0.6849 16 6 2.0831 -0.7972 1.2139 17 1 1.4480 -1.6542 1.4382 18 7 2.2294 0.0660 2.3885 19 6 2.3260 -0.4875 3.6372 20 1 2.2948 -1.5605 3.7562 21 6 2.4641 0.3304 4.7503 22 7 2.5017 1.6380 4.6054 23 14 2.5966 -0.4248 6.4537 24 1 4.0244 -0.6796 6.7725 25 1 2.0249 0.5104 7.4555 26 1 1.8458 -1.7055 6.4871 27 1 -0.3633 -1.0272 0.0321 28 1 -0.3634 0.5414 0.8735 29 1 -0.3633 0.4858 -0.9056 30 1 2.3741 -0.1026 -1.9977 31 1 1.3121 -1.4741 -1.5791 32 1 5.8817 -2.3780 -0.5104 33 1 4.8185 -3.7322 -0.0589 34 1 3.9724 -4.4890 -2.9091 35 1 5.2985 -5.6345 -3.2228 36 1 4.4779 -5.6340 -1.6436 37 1 7.0332 -2.3782 -2.7272 38 1 6.7909 -3.7329 -3.8558 39 1 5.4646 -2.5877 -3.5420 40 1 6.9066 -5.0052 -0.2796 41 1 8.4929 -3.5208 -2.5418 42 1 9.2259 -4.3305 -1.0555 43 1 8.2424 -6.5525 -1.7819 44 1 7.5093 -5.7425 -3.2677 45 1 3.7975 -2.1479 1.2131 46 1 4.1987 -0.4550 0.7952 47 1 2.2578 1.0297 2.2816 48 1 2.5978 2.2096 5.3831 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054641539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:28 Heat of formation + Delta-G solvation = -7.589086 kcal Electronic energy + Delta-G solvation = -24639.306260 eV Core-core repulsion = 21308.916917 eV Total energy + Delta-G solvation = -3330.389343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33257 -38.81108 -37.37140 -34.13453 -33.52941 -32.55152 -30.75328 -28.51107 -27.48798 -27.30897 -25.75681 -24.02079 -23.35620 -22.31876 -21.48826 -19.94516 -19.09770 -18.25348 -17.20287 -16.94933 -16.10771 -15.76050 -15.43878 -14.89143 -14.39334 -14.15496 -13.79602 -13.52218 -13.48936 -13.13087 -12.99083 -12.87964 -12.79408 -12.42586 -11.89324 -11.86600 -11.65399 -11.59510 -11.28020 -11.15527 -11.06725 -11.01530 -10.95790 -10.78104 -10.71048 -10.62353 -10.34641 -10.27232 -9.95184 -9.92109 -9.80096 -9.31044 -9.02881 -8.29896 -7.12082 -5.88689 -3.19527 2.85386 3.23543 3.36745 3.42860 3.44011 3.71574 4.45157 4.53350 4.65626 4.78761 4.83120 4.95722 5.09181 5.13324 5.16314 5.20992 5.30942 5.46018 5.51014 5.51823 5.62175 5.65135 5.70907 5.76100 5.76666 5.81079 5.81646 5.90887 5.96508 5.99679 6.02326 6.06169 6.13692 6.18812 6.23017 6.27918 6.36067 6.44565 6.49291 6.51295 6.56643 6.65179 6.85311 7.59787 7.83772 8.28621 8.42927 9.40939 9.94586 10.29583 11.33263 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.003859 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.721845 B = 7254.743950 C = 8609.066690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.614 5.614 6 C 0.528 3.472 7 O -0.547 6.547 8 C -0.125 4.125 9 C -0.013 4.013 10 C -0.150 4.150 11 C -0.155 4.155 12 C -0.143 4.143 13 C -0.185 4.185 14 C -0.178 4.178 15 C 0.072 3.928 16 C 0.177 3.823 17 H 0.064 0.936 18 N -0.711 5.711 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -9.630 -13.217 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.347 5.347 6 C 0.317 3.683 7 O -0.427 6.427 8 C -0.165 4.165 9 C -0.013 4.013 10 C -0.207 4.207 11 C -0.212 4.212 12 C -0.161 4.161 13 C -0.222 4.222 14 C -0.215 4.215 15 C -0.054 4.054 16 C 0.065 3.935 17 H 0.082 0.918 18 N -0.351 5.351 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.221 0.779 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.552 -9.847 -13.680 17.746 hybrid contribution 0.343 -0.038 1.208 1.256 sum 5.895 -9.885 -12.472 16.971 Atomic orbital electron populations 1.21652 0.93953 1.01766 1.01746 1.22514 0.96418 0.99784 0.94609 0.89813 1.21935 0.87625 0.94315 0.96767 1.48600 1.29869 1.43737 1.12481 1.20292 0.83448 0.78640 0.85889 1.90530 1.71171 1.64450 1.16531 1.21693 0.95933 0.99568 0.99333 1.19738 0.93117 0.94363 0.94131 1.22068 0.99989 0.98062 1.00534 1.22216 1.02184 0.99314 0.97493 1.22374 0.91817 1.02923 0.99035 1.23133 0.96264 0.98782 1.04017 1.22889 1.04410 0.93932 1.00258 1.23508 1.02473 1.00760 0.78629 1.21411 0.91784 0.93673 0.86649 0.91783 1.42291 1.86879 1.05179 1.00735 1.19227 1.43150 0.91881 0.83676 0.91008 1.24755 1.02306 0.95329 0.97991 1.69653 1.56444 1.02121 1.29418 0.86200 0.77706 0.78035 0.84285 1.21598 1.21704 1.20654 0.92856 0.91452 0.93200 0.92147 0.91761 0.88968 0.89019 0.89686 0.93256 0.93548 0.93208 0.93261 0.89615 0.87908 0.88146 0.89225 0.89198 0.88883 0.91289 0.91210 0.77850 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.14 37.15 0.34 -1.53 16 2 C -0.11 -1.75 3.19 -88.65 -0.28 -2.03 16 3 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 4 C 0.12 1.72 6.46 -3.07 -0.02 1.70 16 5 N -0.61 -9.46 3.33 -170.52 -0.57 -10.03 16 6 C 0.53 7.97 7.26 -10.98 -0.08 7.89 16 7 O -0.55 -9.22 11.67 5.56 0.06 -9.16 16 8 C -0.13 -1.57 3.76 -27.88 -0.10 -1.68 16 9 C -0.01 -0.15 0.62 -154.51 -0.10 -0.25 16 10 C -0.15 -1.79 8.02 37.16 0.30 -1.50 16 11 C -0.16 -1.84 6.77 37.16 0.25 -1.59 16 12 C -0.14 -1.46 5.15 -90.62 -0.47 -1.92 16 13 C -0.19 -1.73 9.57 -26.76 -0.26 -1.98 16 14 C -0.18 -1.62 9.38 -26.76 -0.25 -1.87 16 15 C 0.07 1.19 6.39 -2.53 -0.02 1.18 16 16 C 0.18 3.23 3.14 -65.64 -0.21 3.02 16 17 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 18 N -0.71 -16.30 5.28 -51.22 -0.27 -16.58 16 19 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 20 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 23 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 34 H 0.08 1.21 5.51 -51.93 -0.29 0.92 16 35 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.56 6.98 -51.93 -0.36 0.20 16 38 H 0.05 0.53 7.07 -51.93 -0.37 0.16 16 39 H 0.09 1.21 5.51 -51.93 -0.29 0.93 16 40 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 41 H 0.10 0.94 5.85 -51.93 -0.30 0.64 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.85 7.07 -51.93 -0.37 0.48 16 45 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.39 9.51 7.72 -40.82 -0.32 9.20 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -28.12 368.21 -9.13 -37.25 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.47 Total: 9.96 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.14 Total: -7.40 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.11 Total: -52.51 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.16 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.12 -9.13 -37.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054641539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.662 kcal (2) G-P(sol) polarization free energy of solvation -28.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds