Wall clock time and date at job start Fri Apr 10 2020 20:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 110.91432 * 2 1 4 4 C 1.54909 * 111.00288 * 123.90573 * 2 1 3 5 5 N 1.47743 * 104.83995 * 155.16710 * 4 2 1 6 6 C 1.34780 * 125.81887 * 155.82587 * 5 4 2 7 7 O 1.21276 * 120.00190 * 359.93213 * 6 5 4 8 8 C 1.50704 * 119.99770 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47111 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47428 * 300.00172 * 9 8 6 11 11 C 1.52995 * 109.46921 * 60.00472 * 9 8 6 12 12 C 1.53003 * 109.47069 * 180.02562 * 9 8 6 13 13 C 1.52996 * 117.49825 * 248.62604 * 12 9 8 14 14 C 1.52998 * 60.00215 * 252.51148 * 13 12 9 15 15 C 1.47020 * 108.53125 * 335.74644 * 5 4 2 16 16 C 1.54324 * 107.39983 * 1.18235 * 15 5 4 17 17 H 1.09004 * 110.71964 * 140.48013 * 16 15 5 18 18 N 1.46501 * 110.72010 * 263.75014 * 16 15 5 19 19 C 1.36932 * 120.00386 * 273.54813 * 18 16 15 20 20 H 1.08009 * 119.99883 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00314 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99928 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99689 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47546 * 90.00289 * 23 21 19 25 25 H 1.48502 * 109.47170 * 209.99994 * 23 21 19 26 26 H 1.48497 * 109.47512 * 329.99564 * 23 21 19 27 27 H 1.08996 * 109.46861 * 183.90532 * 1 2 3 28 28 H 1.08998 * 109.46481 * 303.89945 * 1 2 3 29 29 H 1.09002 * 109.46945 * 63.90165 * 1 2 3 30 30 H 1.09003 * 110.36363 * 273.92036 * 4 2 1 31 31 H 1.08996 * 110.37070 * 36.12875 * 4 2 1 32 32 H 1.08992 * 109.47408 * 300.00360 * 8 6 5 33 33 H 1.09005 * 109.47188 * 60.00318 * 8 6 5 34 34 H 1.09005 * 109.46887 * 59.99851 * 10 9 8 35 35 H 1.09000 * 109.47242 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.47263 * 300.00047 * 10 9 8 37 37 H 1.09002 * 109.47559 * 59.99714 * 11 9 8 38 38 H 1.09000 * 109.46948 * 179.97438 * 11 9 8 39 39 H 1.09003 * 109.47236 * 299.99421 * 11 9 8 40 40 H 1.08999 * 115.54989 * 34.33007 * 12 9 8 41 41 H 1.09003 * 117.50220 * 359.97438 * 13 12 9 42 42 H 1.08999 * 117.50103 * 145.02282 * 13 12 9 43 43 H 1.09006 * 117.49785 * 252.51932 * 14 13 12 44 44 H 1.08992 * 117.50411 * 107.48802 * 14 13 12 45 45 H 1.09002 * 109.88367 * 241.68734 * 15 5 4 46 46 H 1.09000 * 109.88319 * 120.67352 * 15 5 4 47 47 H 0.97003 * 119.99337 * 93.54495 * 18 16 15 48 48 H 0.96999 * 119.99334 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 3.4309 -1.2424 0.7733 6 6 4.4539 -1.5596 1.5916 7 8 4.3101 -1.4975 2.7942 8 6 5.7766 -1.9905 1.0120 9 6 6.7577 -2.2896 2.1473 10 6 6.9575 -1.0307 2.9936 11 6 6.1961 -3.4101 3.0246 12 6 8.1008 -2.7264 1.5589 13 6 8.5190 -4.1844 1.7592 14 6 9.2227 -3.0726 2.5399 15 6 3.4675 -1.2742 -0.6961 16 6 2.0861 -0.8080 -1.2022 17 1 2.1922 -0.1700 -2.0797 18 7 1.2268 -1.9575 -1.4962 19 6 1.2814 -2.5564 -2.7264 20 1 1.9579 -2.1811 -3.4802 21 6 0.4676 -3.6459 -3.0048 22 7 0.5205 -4.2218 -4.1871 23 14 -0.7028 -4.2945 -1.7014 24 1 -2.0109 -3.6020 -1.8218 25 1 -0.8963 -5.7545 -1.8922 26 1 -0.1316 -4.0430 -0.3539 27 1 -0.3633 -1.0253 0.0700 28 1 -0.3632 0.5732 0.8530 29 1 -0.3633 0.4521 -0.9229 30 1 2.1560 -0.1721 2.0836 31 1 1.4508 -1.6693 1.4037 32 1 5.6342 -2.8870 0.4087 33 1 6.1770 -1.1920 0.3873 34 1 6.0007 -0.7191 3.4128 35 1 7.6568 -1.2437 3.8022 36 1 7.3576 -0.2324 2.3686 37 1 6.0537 -4.3070 2.4217 38 1 6.8952 -3.6235 3.8332 39 1 5.2394 -3.0985 3.4439 40 1 8.3820 -2.2460 0.6218 41 1 7.8376 -4.8324 2.3105 42 1 9.0755 -4.6636 0.9537 43 1 10.2421 -2.8202 2.2479 44 1 9.0040 -2.9891 3.6044 45 1 3.6650 -2.2895 -1.0401 46 1 4.2429 -0.6014 -1.0623 47 1 0.6191 -2.2943 -0.8193 48 1 -0.0485 -4.9829 -4.3817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054641541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:30 Heat of formation + Delta-G solvation = 0.810950 kcal Electronic energy + Delta-G solvation = -24986.551774 eV Core-core repulsion = 21656.526684 eV Total energy + Delta-G solvation = -3330.025090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34338 -38.90523 -37.48667 -34.10891 -33.52158 -32.51194 -30.87949 -28.57812 -28.03304 -27.29492 -25.79426 -23.74646 -23.31964 -22.30447 -21.94893 -19.49335 -19.05889 -18.19375 -17.91377 -16.91601 -16.09346 -15.75582 -15.33646 -15.02892 -14.36010 -14.27985 -13.84291 -13.80862 -13.60198 -13.22720 -12.99780 -12.77785 -12.58506 -12.25948 -12.01849 -11.85280 -11.71291 -11.63505 -11.50347 -11.26158 -11.12316 -11.04919 -10.94286 -10.85026 -10.72858 -10.58933 -10.34946 -10.31881 -10.03257 -9.91360 -9.65206 -9.31737 -9.04332 -8.29595 -7.40679 -5.87200 -3.24102 2.86362 3.24383 3.30664 3.33364 3.39649 3.72820 4.49606 4.50170 4.65246 4.74526 4.83552 4.94148 5.05060 5.08149 5.12603 5.17890 5.27230 5.31646 5.46840 5.50736 5.52822 5.62430 5.64608 5.73390 5.77666 5.78178 5.80315 5.81962 5.96468 5.99218 6.04340 6.04778 6.08103 6.14355 6.15157 6.22180 6.29733 6.38389 6.47964 6.51765 6.58931 6.65737 6.66818 7.84461 7.87867 8.31760 8.43338 9.08990 9.81513 10.00135 11.30610 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.004180 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.403252 B = 6696.831369 C = 7511.051636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 H 0.084 0.916 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.529 3.471 7 O -0.547 6.547 8 C -0.125 4.125 9 C -0.013 4.013 10 C -0.149 4.149 11 C -0.156 4.156 12 C -0.143 4.143 13 C -0.185 4.185 14 C -0.178 4.178 15 C 0.071 3.929 16 C 0.178 3.822 17 H 0.079 0.921 18 N -0.737 5.737 19 C -0.250 4.250 20 H 0.093 0.907 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.878 3.122 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.278 1.278 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.364 0.636 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 6.835 11.977 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.343 5.343 6 C 0.319 3.681 7 O -0.427 6.427 8 C -0.165 4.165 9 C -0.013 4.013 10 C -0.206 4.206 11 C -0.213 4.213 12 C -0.161 4.161 13 C -0.222 4.222 14 C -0.215 4.215 15 C -0.055 4.055 16 C 0.067 3.933 17 H 0.096 0.904 18 N -0.380 5.380 19 C -0.380 4.380 20 H 0.110 0.890 21 C -0.185 4.185 22 N -0.576 5.576 23 Si 0.709 3.291 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.198 0.802 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.899 6.755 12.384 18.455 hybrid contribution -0.705 -0.752 0.585 1.185 sum 11.194 6.003 12.970 18.154 Atomic orbital electron populations 1.21565 0.93707 1.02184 1.01592 1.22651 0.96696 0.98922 0.95401 0.89784 1.22281 0.83206 0.98083 0.97337 1.48611 1.11849 1.65953 1.07894 1.20269 0.84942 0.76781 0.86155 1.90530 1.83256 1.54333 1.14590 1.21689 0.92497 1.03188 0.99103 1.19735 0.91211 0.96427 0.93973 1.22063 1.03325 0.96027 0.99156 1.22216 1.02835 0.97152 0.99053 1.22363 0.95185 0.98326 1.00240 1.23146 1.03861 0.91859 1.03288 1.22897 0.96739 1.03990 0.97887 1.23216 1.01170 1.02557 0.78576 1.21162 0.88025 0.89140 0.94996 0.90357 1.42810 1.46339 1.34435 1.14394 1.19049 1.19853 1.09705 0.89385 0.88955 1.24640 0.99461 0.98130 0.96293 1.69691 1.42466 1.24809 1.20655 0.86654 0.81946 0.78659 0.81879 1.20844 1.21621 1.20387 0.92332 0.93216 0.91603 0.91119 0.91803 0.88792 0.89196 0.89717 0.93261 0.93643 0.93100 0.93273 0.89648 0.87968 0.88102 0.89185 0.89215 0.88903 0.90212 0.92344 0.80186 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.85 37.16 0.33 -1.53 16 2 C -0.12 -1.66 3.51 -88.47 -0.31 -1.97 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.11 1.73 6.38 -2.35 -0.02 1.72 16 5 N -0.61 -9.55 3.34 -170.26 -0.57 -10.12 16 6 C 0.53 8.17 7.27 -10.98 -0.08 8.09 16 7 O -0.55 -9.48 11.62 5.56 0.06 -9.42 16 8 C -0.12 -1.58 3.94 -27.88 -0.11 -1.69 16 9 C -0.01 -0.15 0.62 -154.51 -0.10 -0.25 16 10 C -0.15 -1.77 8.02 37.16 0.30 -1.47 16 11 C -0.16 -1.96 6.77 37.16 0.25 -1.71 16 12 C -0.14 -1.47 5.15 -90.62 -0.47 -1.93 16 13 C -0.18 -1.80 9.57 -26.73 -0.26 -2.05 16 14 C -0.18 -1.64 9.38 -26.73 -0.25 -1.89 16 15 C 0.07 1.11 6.22 -3.06 -0.02 1.09 16 16 C 0.18 3.04 3.37 -66.09 -0.22 2.82 16 17 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 18 N -0.74 -15.88 4.42 -51.65 -0.23 -16.11 16 19 C -0.25 -6.54 10.46 -15.06 -0.16 -6.70 16 20 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 21 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 22 N -0.93 -28.05 13.97 55.49 0.78 -27.27 16 23 Si 0.88 21.37 27.74 -169.99 -4.71 16.66 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 27 H 0.06 0.93 6.37 -51.93 -0.33 0.60 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.20 5.51 -51.93 -0.29 0.91 16 35 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.63 6.98 -51.93 -0.36 0.27 16 38 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 39 H 0.08 1.29 5.51 -51.93 -0.29 1.00 16 40 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 41 H 0.10 1.01 5.85 -51.93 -0.30 0.71 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.86 7.07 -51.93 -0.37 0.49 16 45 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.36 7.92 3.96 -40.82 -0.16 7.76 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -29.64 362.38 -8.74 -38.39 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.33 Total: 9.69 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.20 Total: -7.28 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.02 Total: -53.50 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.64 -8.74 -38.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054641541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.199 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds