Wall clock time and date at job start Fri Apr 10 2020 20:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.78584 * 2 1 4 4 C 1.54323 * 110.72179 * 236.76051 * 2 1 3 5 5 N 1.47027 * 107.40358 * 219.52265 * 4 2 1 6 6 C 1.34772 * 125.65020 * 178.89643 * 5 4 2 7 7 O 1.21287 * 120.00167 * 355.66228 * 6 5 4 8 8 C 1.50695 * 120.00154 * 175.66180 * 6 5 4 9 9 C 1.52994 * 109.47294 * 307.98647 * 8 6 5 10 10 C 1.53004 * 109.47304 * 67.98558 * 8 6 5 11 11 C 1.52999 * 109.47369 * 187.98492 * 8 6 5 12 12 C 1.53781 * 113.61348 * 277.67243 * 11 8 6 13 13 C 1.53960 * 87.02035 * 220.04509 * 12 11 8 14 14 C 1.53779 * 113.61757 * 180.02562 * 11 8 6 15 15 C 1.47424 * 108.69948 * 358.86246 * 5 4 2 16 16 C 1.54908 * 104.83691 * 24.12742 * 15 5 4 17 17 H 1.08996 * 110.99910 * 81.06552 * 16 15 5 18 18 N 1.46490 * 111.00524 * 204.91680 * 16 15 5 19 19 C 1.36937 * 120.00371 * 273.54465 * 18 16 15 20 20 H 1.08001 * 119.99815 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00370 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47326 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47112 * 119.99959 * 23 21 19 26 26 H 1.48499 * 109.47401 * 239.99718 * 23 21 19 27 27 H 1.08999 * 109.47043 * 181.78281 * 1 2 3 28 28 H 1.09000 * 109.46971 * 301.78711 * 1 2 3 29 29 H 1.08999 * 109.46962 * 61.78845 * 1 2 3 30 30 H 1.08997 * 109.88667 * 100.02541 * 4 2 1 31 31 H 1.09001 * 109.88233 * 339.01400 * 4 2 1 32 32 H 1.09002 * 109.47348 * 60.00132 * 9 8 6 33 33 H 1.09001 * 109.47726 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47160 * 299.99715 * 9 8 6 35 35 H 1.09008 * 109.46731 * 46.65529 * 10 8 6 36 36 H 1.09001 * 109.47654 * 166.65466 * 10 8 6 37 37 H 1.09000 * 109.47099 * 286.65824 * 10 8 6 38 38 H 1.08999 * 112.85086 * 48.86667 * 11 8 6 39 39 H 1.08996 * 113.61885 * 334.56265 * 12 11 8 40 40 H 1.09003 * 113.61763 * 105.47105 * 12 11 8 41 41 H 1.08999 * 113.53583 * 270.81437 * 13 12 11 42 42 H 1.09000 * 113.74452 * 139.94479 * 13 12 11 43 43 H 1.09004 * 113.61488 * 254.53202 * 14 11 8 44 44 H 1.09007 * 113.61178 * 25.34863 * 14 11 8 45 45 H 1.08999 * 110.36687 * 142.97203 * 15 5 4 46 46 H 1.09000 * 110.36465 * 265.17876 * 15 5 4 47 47 H 0.97009 * 120.00042 * 93.54912 * 18 16 15 48 48 H 0.96993 * 120.00325 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2438 -1.5535 -0.7416 6 6 3.9886 -2.3873 -1.4942 7 8 3.6676 -2.6195 -2.6406 8 6 5.2202 -3.0312 -0.9115 9 6 6.1167 -1.9543 -0.2974 10 6 4.8092 -4.0310 0.1713 11 6 5.9850 -3.7622 -2.0167 12 6 5.4323 -5.1638 -2.3249 13 6 6.8956 -5.6241 -2.4564 14 6 7.2650 -4.4576 -1.5238 15 6 3.4656 -1.2540 0.6848 16 6 2.0832 -0.7973 1.2138 17 1 1.4482 -1.6543 1.4380 18 7 2.2295 0.0666 2.3878 19 6 2.3266 -0.4862 3.6369 20 1 2.2956 -1.5591 3.7565 21 6 2.4647 0.3324 4.7494 22 7 2.5029 1.6399 4.6038 23 14 2.5978 -0.4218 6.4532 24 1 2.5304 -1.9015 6.3462 25 1 3.8908 -0.0290 7.0688 26 1 1.4786 0.0653 7.2990 27 1 -0.3633 -1.0272 0.0320 28 1 -0.3633 0.5413 0.8735 29 1 -0.3633 0.4858 -0.9056 30 1 2.3741 -0.1025 -1.9977 31 1 1.3121 -1.4739 -1.5792 32 1 5.5718 -1.4335 0.4901 33 1 7.0073 -2.4200 0.1246 34 1 6.4096 -1.2420 -1.0688 35 1 3.9937 -4.6526 -0.1987 36 1 5.6608 -4.6623 0.4252 37 1 4.4802 -3.4905 1.0589 38 1 6.1366 -3.1478 -2.9042 39 1 4.9050 -5.6193 -1.4868 40 1 4.8716 -5.2166 -3.2581 41 1 7.2958 -5.5197 -3.4649 42 1 7.0872 -6.6064 -2.0245 43 1 8.1809 -3.9413 -1.8115 44 1 7.2405 -4.7182 -0.4656 45 1 3.7975 -2.1479 1.2129 46 1 4.1988 -0.4550 0.7950 47 1 2.2576 1.0303 2.2805 48 1 2.5991 2.2119 5.3812 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054936643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:37 Heat of formation + Delta-G solvation = -4.960171 kcal Electronic energy + Delta-G solvation = -25332.694633 eV Core-core repulsion = 22002.419288 eV Total energy + Delta-G solvation = -3330.275345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74953 -38.86789 -37.24145 -34.43186 -33.90129 -32.08444 -30.71899 -27.61582 -27.59616 -26.36058 -25.76766 -25.21471 -24.09728 -22.60764 -21.02067 -19.95969 -19.30449 -18.32397 -17.20569 -16.38955 -16.25853 -15.70892 -15.00311 -14.84459 -14.63787 -14.13850 -13.76700 -13.54781 -13.37738 -13.12761 -12.96483 -12.80095 -12.63028 -12.41064 -12.11428 -12.06880 -11.76484 -11.62457 -11.50215 -11.29621 -11.14013 -11.04881 -11.00003 -10.65681 -10.62224 -10.35538 -10.31312 -10.22747 -10.04370 -9.88667 -9.79851 -9.35541 -9.01411 -8.27042 -7.11006 -5.88681 -3.19340 2.90733 3.27107 3.36312 3.42852 3.44577 4.41321 4.50964 4.58768 4.62613 4.78345 4.86463 4.97998 5.05447 5.11885 5.21980 5.26894 5.34142 5.50160 5.55646 5.59968 5.63082 5.66865 5.71229 5.76426 5.81127 5.81857 5.88097 5.91404 5.92890 5.98607 6.02351 6.05455 6.10943 6.22506 6.23714 6.28012 6.30263 6.43875 6.50177 6.54069 6.55456 6.66378 6.86000 7.60299 7.86713 8.28607 8.45237 9.41038 9.94898 10.29913 11.33324 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.004429 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.223697 B = 6319.922751 C = 7508.952477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.536 3.464 7 O -0.553 6.553 8 C -0.065 4.065 9 C -0.155 4.155 10 C -0.151 4.151 11 C -0.081 4.081 12 C -0.135 4.135 13 C -0.143 4.143 14 C -0.137 4.137 15 C 0.064 3.936 16 C 0.176 3.824 17 H 0.064 0.936 18 N -0.711 5.711 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.387 0.613 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 -9.462 -11.552 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.344 5.344 6 C 0.325 3.675 7 O -0.431 6.431 8 C -0.068 4.068 9 C -0.212 4.212 10 C -0.207 4.207 11 C -0.100 4.100 12 C -0.173 4.173 13 C -0.181 4.181 14 C -0.174 4.174 15 C -0.061 4.061 16 C 0.064 3.936 17 H 0.082 0.918 18 N -0.351 5.351 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.221 0.779 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.369 -9.718 -12.023 16.365 hybrid contribution 0.174 0.106 0.953 0.974 sum 5.543 -9.613 -11.070 15.674 Atomic orbital electron populations 1.21652 0.93978 1.01752 1.01721 1.22514 0.96399 0.99760 0.94641 0.89825 1.21940 0.87765 0.94247 0.96746 1.48485 1.29727 1.43847 1.12346 1.20256 0.83930 0.78054 0.85262 1.90638 1.71810 1.62365 1.18281 1.20601 0.93200 0.96402 0.96614 1.22122 0.99695 0.97815 1.01589 1.22139 1.01922 0.98681 0.97992 1.22329 0.95089 0.95350 0.97201 1.23032 0.95987 0.95969 1.02263 1.22840 0.97305 0.98122 0.99791 1.23040 0.97383 0.97188 0.99838 1.23833 1.02205 1.01111 0.78965 1.21437 0.91899 0.93646 0.86645 0.91836 1.42297 1.86883 1.05168 1.00738 1.19266 1.42974 0.91897 0.83656 0.90970 1.24747 1.02356 0.95322 0.97954 1.69661 1.56558 1.02106 1.29279 0.86146 0.77311 0.78236 0.84633 1.20460 1.21779 1.21787 0.92870 0.91459 0.93225 0.92251 0.91813 0.90231 0.91619 0.92600 0.92141 0.91250 0.90811 0.89042 0.89805 0.91457 0.90556 0.91730 0.91690 0.89740 0.90306 0.90961 0.77860 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.14 37.16 0.34 -1.55 16 2 C -0.11 -1.77 3.19 -88.65 -0.28 -2.05 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 4 C 0.12 1.77 6.46 -3.06 -0.02 1.75 16 5 N -0.61 -9.70 3.30 -170.52 -0.56 -10.27 16 6 C 0.54 8.65 6.52 -10.99 -0.07 8.57 16 7 O -0.55 -10.38 16.15 5.55 0.09 -10.29 16 8 C -0.07 -0.85 0.42 -155.66 -0.07 -0.91 16 9 C -0.16 -1.92 7.96 37.15 0.30 -1.63 16 10 C -0.15 -1.80 6.94 37.16 0.26 -1.55 16 11 C -0.08 -0.97 2.46 -89.81 -0.22 -1.19 16 12 C -0.14 -1.54 7.18 -25.82 -0.19 -1.73 16 13 C -0.14 -1.35 8.09 -25.79 -0.21 -1.55 16 14 C -0.14 -1.33 6.46 -25.89 -0.17 -1.50 16 15 C 0.06 1.06 4.64 -2.53 -0.01 1.05 16 16 C 0.18 3.21 3.14 -65.65 -0.21 3.00 16 17 H 0.06 1.20 8.03 -51.93 -0.42 0.79 16 18 N -0.71 -16.20 5.28 -51.23 -0.27 -16.47 16 19 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 23 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.96 7.82 -51.93 -0.41 0.56 16 32 H 0.08 1.08 4.33 -51.93 -0.22 0.86 16 33 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.74 6.90 -51.92 -0.36 0.38 16 36 H 0.07 0.71 6.07 -51.93 -0.32 0.39 16 37 H 0.07 0.94 5.12 -51.93 -0.27 0.68 16 38 H 0.09 1.22 7.99 -51.93 -0.41 0.80 16 39 H 0.08 0.93 5.79 -51.93 -0.30 0.63 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.78 6.30 -51.92 -0.33 0.45 16 45 H 0.08 1.27 4.51 -51.93 -0.23 1.03 16 46 H 0.07 1.26 6.87 -51.93 -0.36 0.91 16 47 H 0.39 9.47 7.72 -40.82 -0.31 9.15 16 48 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -28.79 359.01 -8.51 -37.30 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.09 Total: 9.92 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.79 Total: -6.04 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.11 Total: -52.51 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.79 -8.51 -37.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054936643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.341 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds