Wall clock time and date at job start Fri Apr 10 2020 20:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.78244 * 2 1 4 4 C 1.54326 * 110.72449 * 236.76110 * 2 1 3 5 5 N 1.47019 * 107.27381 * 219.44644 * 4 2 1 6 6 C 1.34771 * 125.64590 * 178.97100 * 5 4 2 7 7 O 1.21279 * 120.00713 * 356.27698 * 6 5 4 8 8 C 1.50707 * 119.99753 * 176.27280 * 6 5 4 9 9 C 1.53002 * 109.47181 * 308.09203 * 8 6 5 10 10 C 1.53001 * 109.46781 * 68.09339 * 8 6 5 11 11 C 1.52996 * 109.47046 * 188.09164 * 8 6 5 12 12 C 1.53782 * 113.61466 * 277.37603 * 11 8 6 13 13 C 1.53957 * 87.02023 * 220.04726 * 12 11 8 14 14 C 1.53784 * 87.11040 * 25.36396 * 13 12 11 15 15 C 1.47424 * 108.70335 * 358.93804 * 5 4 2 16 16 C 1.54907 * 104.83240 * 24.12560 * 15 5 4 17 17 H 1.08999 * 111.00603 * 204.91410 * 16 15 5 18 18 N 1.46509 * 111.00185 * 81.06995 * 16 15 5 19 19 C 1.36932 * 119.99934 * 92.80257 * 18 16 15 20 20 H 1.08001 * 120.00445 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99723 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47481 * 119.99706 * 23 21 19 26 26 H 1.48504 * 109.47130 * 239.99692 * 23 21 19 27 27 H 1.08994 * 109.47102 * 181.78456 * 1 2 3 28 28 H 1.08999 * 109.47063 * 301.78834 * 1 2 3 29 29 H 1.08997 * 109.46997 * 61.78264 * 1 2 3 30 30 H 1.09004 * 109.87738 * 338.86129 * 4 2 1 31 31 H 1.08993 * 109.88569 * 99.86765 * 4 2 1 32 32 H 1.09007 * 109.46922 * 60.00088 * 9 8 6 33 33 H 1.08999 * 109.46679 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47226 * 299.99775 * 9 8 6 35 35 H 1.08992 * 109.47571 * 42.38915 * 10 8 6 36 36 H 1.09003 * 109.46678 * 162.39010 * 10 8 6 37 37 H 1.09004 * 109.47082 * 282.38904 * 10 8 6 38 38 H 1.09003 * 112.84975 * 48.57512 * 11 8 6 39 39 H 1.08996 * 113.61625 * 334.56588 * 12 11 8 40 40 H 1.09000 * 113.61201 * 105.47318 * 12 11 8 41 41 H 1.08993 * 113.54164 * 270.81067 * 13 12 11 42 42 H 1.09005 * 113.66404 * 139.93339 * 13 12 11 43 43 H 1.09000 * 113.61344 * 220.08924 * 14 13 12 44 44 H 1.09002 * 113.69183 * 89.19491 * 14 13 12 45 45 H 1.08998 * 110.37170 * 142.97003 * 15 5 4 46 46 H 1.09002 * 110.36455 * 265.17988 * 15 5 4 47 47 H 0.97004 * 119.99461 * 272.80252 * 18 16 15 48 48 H 0.96997 * 119.99721 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7390 6 6 3.9922 -2.3836 -1.4897 7 8 3.6801 -2.6086 -2.6398 8 6 5.2164 -3.0354 -0.9000 9 6 6.1108 -1.9654 -0.2705 10 6 4.7923 -4.0410 0.1723 11 6 5.9890 -3.7615 -2.0030 12 6 5.4392 -5.1621 -2.3207 13 6 6.9035 -5.6211 -2.4442 14 6 7.2655 -4.4590 -1.5042 15 6 3.4633 -1.2498 0.6876 16 6 2.0790 -0.7954 1.2138 17 1 2.1850 -0.1518 2.0871 18 7 1.2271 -1.9488 1.5145 19 6 1.2021 -2.4699 2.7806 20 1 1.8101 -2.0305 3.5575 21 6 0.3954 -3.5631 3.0653 22 7 -0.3459 -4.0983 2.1185 23 14 0.3607 -4.2735 4.7925 24 1 1.2765 -3.4966 5.6659 25 1 -1.0209 -4.1975 5.3315 26 1 0.7994 -5.6917 4.7533 27 1 -0.3633 -1.0271 0.0320 28 1 -0.3633 0.5414 0.8735 29 1 -0.3633 0.4859 -0.9055 30 1 1.3130 -1.4758 -1.5775 31 1 2.3716 -0.1026 -1.9988 32 1 5.5603 -1.4481 0.5154 33 1 6.9959 -2.4369 0.1564 34 1 6.4129 -1.2490 -1.0344 35 1 3.9295 -4.6060 -0.1804 36 1 5.6164 -4.7250 0.3751 37 1 4.5288 -3.5083 1.0861 38 1 6.1462 -3.1433 -2.8869 39 1 4.9065 -5.6212 -1.4879 40 1 4.8847 -5.2112 -3.2578 41 1 7.3104 -5.5125 -3.4495 42 1 7.0913 -6.6051 -2.0145 43 1 8.1834 -3.9415 -1.7832 44 1 7.2336 -4.7243 -0.4474 45 1 3.7960 -2.1426 1.2170 46 1 4.1946 -0.4492 0.7985 47 1 0.6808 -2.3432 0.8167 48 1 -0.9094 -4.8623 2.3175 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054936645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:43 Heat of formation + Delta-G solvation = -1.186185 kcal Electronic energy + Delta-G solvation = -25843.951133 eV Core-core repulsion = 22513.839441 eV Total energy + Delta-G solvation = -3330.111692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.61313 -38.81667 -37.16903 -34.30912 -33.64030 -31.94876 -30.45908 -27.82556 -27.43502 -26.18849 -25.62631 -25.10702 -23.90853 -22.81902 -21.14339 -19.30495 -19.15337 -18.21823 -17.41062 -16.17167 -16.12924 -15.49079 -14.87608 -14.86196 -14.40770 -14.19527 -13.91621 -13.35305 -13.30765 -12.98979 -12.85514 -12.59695 -12.42915 -12.18891 -11.97841 -11.83576 -11.68410 -11.50269 -11.47074 -11.13413 -10.99613 -10.95257 -10.94147 -10.67349 -10.36146 -10.26973 -10.21912 -10.16759 -9.96648 -9.86658 -9.65862 -9.19506 -8.99471 -8.12284 -7.03085 -5.84291 -3.13918 3.09909 3.37734 3.43505 3.45783 3.46211 4.51330 4.57091 4.71348 4.74941 4.91119 4.96493 5.09199 5.17939 5.19950 5.35448 5.42669 5.47872 5.54772 5.60769 5.68607 5.73802 5.78933 5.81388 5.85183 5.88161 5.92271 5.98200 6.01194 6.08629 6.14571 6.17001 6.22401 6.23948 6.28351 6.37415 6.38963 6.43214 6.47420 6.61188 6.67008 6.71251 6.87587 6.96878 7.62828 8.04118 8.33207 8.63995 9.45283 10.01238 10.36033 11.37684 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.005509 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.324019 B = 5081.309417 C = 6230.324262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.539 3.461 7 O -0.553 6.553 8 C -0.065 4.065 9 C -0.152 4.152 10 C -0.145 4.145 11 C -0.081 4.081 12 C -0.136 4.136 13 C -0.143 4.143 14 C -0.137 4.137 15 C 0.060 3.940 16 C 0.170 3.830 17 H 0.073 0.927 18 N -0.707 5.707 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.927 5.927 23 Si 0.904 3.096 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.387 0.613 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 4.682 -5.263 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.095 0.905 4 C -0.007 4.007 5 N -0.333 5.333 6 C 0.327 3.673 7 O -0.432 6.432 8 C -0.068 4.068 9 C -0.209 4.209 10 C -0.202 4.202 11 C -0.099 4.099 12 C -0.173 4.173 13 C -0.181 4.181 14 C -0.174 4.174 15 C -0.066 4.066 16 C 0.057 3.943 17 H 0.091 0.909 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.222 0.778 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.529 4.452 -5.729 14.478 hybrid contribution -0.257 -0.574 0.684 0.929 sum 12.272 3.878 -5.044 13.823 Atomic orbital electron populations 1.21601 0.93541 1.03384 1.00410 1.22530 0.97075 0.98442 0.95482 0.90468 1.21910 0.88086 0.94271 0.96392 1.48271 1.29326 1.43958 1.11701 1.20174 0.83928 0.77833 0.85323 1.90633 1.72083 1.62243 1.18220 1.20601 0.93136 0.96345 0.96707 1.22104 0.99619 0.97945 1.01198 1.22063 1.01704 0.98500 0.97961 1.22320 0.95004 0.95497 0.97113 1.23035 0.95858 0.95900 1.02493 1.22831 0.97481 0.98137 0.99621 1.23023 0.97254 0.97287 0.99825 1.23749 1.00824 1.01005 0.81032 1.21385 0.88657 0.89929 0.94309 0.90938 1.42369 1.49529 1.32632 1.10234 1.19266 1.21221 1.09785 0.87365 0.90994 1.24736 0.99437 0.98767 0.97485 1.69673 1.30661 1.25530 1.31609 0.86169 0.77293 0.78825 0.84163 1.20510 1.21872 1.21910 0.90972 0.92399 0.93870 0.91677 0.92670 0.90718 0.91761 0.92779 0.91756 0.91684 0.90778 0.89187 0.89580 0.91459 0.90630 0.91743 0.91864 0.89749 0.89210 0.92602 0.77750 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.80 37.16 0.33 -1.78 16 2 C -0.12 -1.79 3.42 -88.79 -0.30 -2.09 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.96 6.46 -3.06 -0.02 1.94 16 5 N -0.60 -10.39 3.30 -170.52 -0.56 -10.95 16 6 C 0.54 9.73 6.49 -10.98 -0.07 9.66 16 7 O -0.55 -11.65 16.16 5.56 0.09 -11.56 16 8 C -0.06 -0.94 0.42 -155.66 -0.07 -1.01 16 9 C -0.15 -1.84 7.92 37.16 0.29 -1.54 16 10 C -0.15 -2.19 6.88 37.16 0.26 -1.93 16 11 C -0.08 -1.09 2.46 -89.81 -0.22 -1.31 16 12 C -0.14 -1.86 7.17 -25.82 -0.19 -2.04 16 13 C -0.14 -1.57 8.09 -25.82 -0.21 -1.78 16 14 C -0.14 -1.48 6.42 -25.92 -0.17 -1.65 16 15 C 0.06 0.96 4.62 -2.53 -0.01 0.95 16 16 C 0.17 3.04 3.47 -65.78 -0.23 2.81 16 17 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 18 N -0.71 -16.18 4.56 -51.35 -0.23 -16.41 16 19 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 23 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.23 7.82 -51.93 -0.41 0.82 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.91 4.28 -51.93 -0.22 0.69 16 33 H 0.06 0.67 7.44 -51.93 -0.39 0.28 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.13 7.12 -51.93 -0.37 0.76 16 36 H 0.06 0.83 5.85 -51.93 -0.30 0.53 16 37 H 0.07 1.17 5.28 -51.93 -0.27 0.90 16 38 H 0.09 1.30 7.98 -51.93 -0.41 0.89 16 39 H 0.09 1.23 5.83 -51.93 -0.30 0.93 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.88 6.32 -51.93 -0.33 0.55 16 45 H 0.09 1.56 4.55 -51.93 -0.24 1.32 16 46 H 0.06 0.76 6.89 -51.93 -0.36 0.40 16 47 H 0.39 9.78 6.32 -40.82 -0.26 9.53 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -29.64 355.58 -8.46 -38.10 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.96 Total: 11.79 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.85 Total: -6.50 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.07 Total: -53.62 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.64 -8.46 -38.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054936645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds