Wall clock time and date at job start Fri Apr 10 2020 20:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.88780 * 2 1 4 4 C 1.55130 * 110.94026 * 124.07212 * 2 1 3 5 5 N 1.47423 * 104.72500 * 155.28738 * 4 2 1 6 6 C 1.34770 * 125.64954 * 155.82037 * 5 4 2 7 7 O 1.21285 * 120.00056 * 359.71582 * 6 5 4 8 8 C 1.50697 * 120.00119 * 179.72200 * 6 5 4 9 9 C 1.53001 * 109.47272 * 180.02562 * 8 6 5 10 10 C 1.53783 * 113.61434 * 184.99947 * 9 8 6 11 11 C 1.53788 * 87.08110 * 220.01390 * 10 9 8 12 12 C 1.52997 * 113.61392 * 139.97848 * 11 10 9 13 13 C 1.52999 * 113.61643 * 270.80390 * 11 10 9 14 14 C 1.53781 * 87.16785 * 25.38945 * 11 10 9 15 15 C 1.47024 * 108.70353 * 335.55829 * 5 4 2 16 16 C 1.54330 * 107.26926 * 1.28575 * 15 5 4 17 17 H 1.09004 * 110.71872 * 263.65231 * 16 15 5 18 18 N 1.46501 * 110.71934 * 140.55798 * 16 15 5 19 19 C 1.36937 * 120.00117 * 86.45266 * 18 16 15 20 20 H 1.08001 * 119.99977 * 359.97438 * 19 18 16 21 21 C 1.38809 * 119.99850 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00235 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46898 * 89.99981 * 23 21 19 25 25 H 1.48502 * 109.47076 * 209.99764 * 23 21 19 26 26 H 1.48495 * 109.47322 * 329.99759 * 23 21 19 27 27 H 1.08997 * 109.47137 * 183.87994 * 1 2 3 28 28 H 1.08996 * 109.46911 * 303.88526 * 1 2 3 29 29 H 1.09006 * 109.46852 * 63.87895 * 1 2 3 30 30 H 1.09008 * 110.49167 * 36.45049 * 4 2 1 31 31 H 1.08996 * 110.34390 * 274.05768 * 4 2 1 32 32 H 1.08997 * 109.47463 * 59.99872 * 8 6 5 33 33 H 1.09003 * 109.46979 * 299.99722 * 8 6 5 34 34 H 1.09000 * 112.90483 * 316.24846 * 9 8 6 35 35 H 1.09003 * 113.61211 * 105.46816 * 10 9 8 36 36 H 1.08992 * 113.69196 * 334.57290 * 10 9 8 37 37 H 1.09002 * 109.47153 * 181.53109 * 12 11 10 38 38 H 1.09001 * 109.46832 * 61.53300 * 12 11 10 39 39 H 1.09004 * 109.47261 * 301.53281 * 12 11 10 40 40 H 1.09003 * 109.46687 * 298.47104 * 13 11 10 41 41 H 1.08993 * 109.47313 * 58.46046 * 13 11 10 42 42 H 1.08992 * 109.47161 * 178.47435 * 13 11 10 43 43 H 1.09000 * 113.61782 * 89.15879 * 14 11 10 44 44 H 1.09006 * 113.61394 * 220.05502 * 14 11 10 45 45 H 1.09004 * 109.88484 * 120.69822 * 15 5 4 46 46 H 1.08999 * 109.88237 * 241.71268 * 15 5 4 47 47 H 0.96997 * 119.99738 * 266.44944 * 18 16 15 48 48 H 0.97000 * 120.00110 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0844 -0.8117 1.2001 5 7 3.4280 -1.2422 0.7726 6 6 4.4489 -1.5603 1.5929 7 8 4.3025 -1.4988 2.7953 8 6 5.7725 -1.9922 1.0162 9 6 6.7505 -2.2935 2.1535 10 6 8.1722 -2.6268 1.6713 11 6 8.2048 -3.7079 2.7647 12 6 8.8747 -5.0095 2.3198 13 6 8.7253 -3.2019 4.1115 14 6 6.6703 -3.7413 2.6705 15 6 3.4679 -1.2731 -0.6967 16 6 2.0862 -0.8075 -1.2025 17 1 1.4482 -1.6631 -1.4240 18 7 2.2279 0.0502 -2.3817 19 6 2.3025 -0.5085 -3.6297 20 1 2.2572 -1.5814 -3.7446 21 6 2.4362 0.3042 -4.7470 22 7 2.4908 1.6118 -4.6070 23 14 2.5387 -0.4580 -6.4494 24 1 1.1722 -0.5894 -7.0159 25 1 3.3590 0.4101 -7.3318 26 1 3.1661 -1.8004 -6.3538 27 1 -0.3633 -1.0253 0.0695 28 1 -0.3633 0.5729 0.8531 29 1 -0.3633 0.4525 -0.9228 30 1 1.4537 -1.6783 1.3986 31 1 2.1523 -0.1800 2.0858 32 1 6.1748 -1.1941 0.3923 33 1 5.6306 -2.8887 0.4125 34 1 6.7224 -1.5460 2.9464 35 1 8.8882 -1.8209 1.8327 36 1 8.2083 -3.0287 0.6589 37 1 8.8367 -5.7341 3.1332 38 1 9.9141 -4.8120 2.0575 39 1 8.3506 -5.4097 1.4518 40 1 9.7523 -2.8551 3.9971 41 1 8.1002 -2.3784 4.4565 42 1 8.6943 -4.0117 4.8404 43 1 6.2934 -4.4485 1.9316 44 1 6.1754 -3.8340 3.6373 45 1 4.2426 -0.5982 -1.0609 46 1 3.6686 -2.2877 -1.0409 47 1 2.2688 1.0138 -2.2784 48 1 2.5839 2.1798 -5.3879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055002543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:45 Heat of formation + Delta-G solvation = -24.030558 kcal Electronic energy + Delta-G solvation = -24187.919076 eV Core-core repulsion = 20856.816777 eV Total energy + Delta-G solvation = -3331.102299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30095 -39.28662 -37.41508 -34.06636 -32.72456 -32.04860 -30.72636 -28.40028 -27.58882 -27.47508 -25.78523 -25.75317 -23.99154 -21.78744 -20.83906 -19.95422 -18.81483 -18.34748 -17.15168 -16.72605 -15.98500 -15.74317 -14.93470 -14.77643 -14.42302 -14.32860 -13.91276 -13.60996 -13.52805 -13.08304 -13.00754 -12.85883 -12.68822 -12.48036 -12.17664 -12.12986 -11.94535 -11.88288 -11.53774 -11.49472 -11.16550 -11.01502 -10.83600 -10.77276 -10.62135 -10.60360 -10.28440 -10.13743 -10.05021 -9.97124 -9.78395 -9.51665 -9.02642 -8.28855 -7.12313 -5.87997 -3.18967 2.91052 3.29219 3.37059 3.42875 3.44166 4.34839 4.46861 4.50564 4.57461 4.65028 4.85062 5.03618 5.14078 5.18168 5.21672 5.26518 5.43262 5.45028 5.51373 5.54293 5.61411 5.64652 5.67254 5.71250 5.75849 5.77691 5.81044 5.82161 5.84333 5.88334 5.91225 5.99948 6.08922 6.09539 6.19274 6.24956 6.36621 6.38095 6.48028 6.51367 6.57106 6.63175 6.86396 7.60085 7.86197 8.29259 8.44584 9.41447 9.95398 10.30373 11.33886 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.003472 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.402276 B = 8063.679300 C = 9406.112542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.083 0.917 4 C 0.113 3.887 5 N -0.615 5.615 6 C 0.526 3.474 7 O -0.555 6.555 8 C -0.127 4.127 9 C -0.091 4.091 10 C -0.129 4.129 11 C -0.091 4.091 12 C -0.135 4.135 13 C -0.128 4.128 14 C -0.124 4.124 15 C 0.073 3.927 16 C 0.177 3.823 17 H 0.065 0.935 18 N -0.712 5.712 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 -8.970 13.627 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.010 4.010 5 N -0.349 5.349 6 C 0.316 3.684 7 O -0.435 6.435 8 C -0.167 4.167 9 C -0.110 4.110 10 C -0.166 4.166 11 C -0.091 4.091 12 C -0.192 4.192 13 C -0.185 4.185 14 C -0.161 4.161 15 C -0.053 4.053 16 C 0.065 3.935 17 H 0.083 0.917 18 N -0.352 5.352 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.221 0.779 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.659 -9.046 14.112 18.430 hybrid contribution 0.123 -0.046 -1.162 1.169 sum 7.783 -9.092 12.951 17.634 Atomic orbital electron populations 1.21612 0.93929 1.01522 1.02071 1.22654 0.96281 0.99743 0.94638 0.89845 1.22276 0.83024 0.97980 0.97677 1.48603 1.11987 1.66178 1.08109 1.20369 0.85070 0.76840 0.86157 1.90644 1.83442 1.54588 1.14780 1.21648 0.92609 1.03193 0.99237 1.22296 0.93498 0.97857 0.97301 1.23136 0.96687 0.98281 0.98542 1.21765 0.95983 0.95623 0.95774 1.21725 1.00266 0.96285 1.00920 1.21583 1.00722 1.01011 0.95189 1.23134 0.94846 0.96480 1.01629 1.23321 1.03294 1.01123 0.77561 1.21243 0.91594 0.93804 0.86890 0.91675 1.42363 1.86993 1.05302 1.00552 1.19235 1.43180 0.91909 0.83594 0.90992 1.24764 1.02355 0.95353 0.97993 1.69660 1.56474 1.02293 1.29215 0.86198 0.77543 0.78073 0.84382 1.21616 1.21724 1.20656 0.92867 0.93182 0.91350 0.91823 0.91096 0.88800 0.89085 0.88396 0.91498 0.89952 0.92839 0.92752 0.92570 0.92590 0.92196 0.92601 0.90406 0.91389 0.90843 0.92398 0.77870 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.31 37.16 0.35 -1.53 16 2 C -0.11 -1.78 3.26 -88.35 -0.29 -2.07 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.11 1.71 6.38 -2.41 -0.02 1.70 16 5 N -0.62 -9.86 3.32 -170.38 -0.57 -10.42 16 6 C 0.53 8.45 7.85 -10.99 -0.09 8.36 16 7 O -0.56 -10.34 16.01 5.55 0.09 -10.25 16 8 C -0.13 -1.63 4.73 -27.88 -0.13 -1.76 16 9 C -0.09 -1.06 2.80 -89.72 -0.25 -1.32 16 10 C -0.13 -1.27 6.79 -25.91 -0.18 -1.44 16 11 C -0.09 -0.86 1.39 -153.69 -0.21 -1.07 16 12 C -0.13 -1.12 9.18 37.16 0.34 -0.78 16 13 C -0.13 -1.12 9.07 37.16 0.34 -0.79 16 14 C -0.12 -1.36 6.77 -25.83 -0.17 -1.53 16 15 C 0.07 1.23 6.24 -3.06 -0.02 1.21 16 16 C 0.18 3.24 3.05 -66.09 -0.20 3.04 16 17 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 18 N -0.71 -16.45 5.18 -51.65 -0.27 -16.72 16 19 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 23 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.90 7.99 -51.92 -0.41 0.49 16 31 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 34 H 0.10 1.29 7.18 -51.93 -0.37 0.92 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.46 7.98 -51.93 -0.41 0.05 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 44 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.39 9.63 7.71 -40.82 -0.31 9.32 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -29.13 380.22 -9.08 -38.21 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.98 Total: 8.01 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.78 Total: -4.86 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.11 Total: -53.18 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.13 -9.08 -38.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055002543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.176 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds