Wall clock time and date at job start Fri Apr 10 2020 20:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34775 * 125.64993 * 178.90064 * 5 4 2 7 7 O 1.21282 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00280 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47232 * 179.97438 * 8 6 5 10 10 C 1.53787 * 113.61364 * 272.49509 * 9 8 6 11 11 C 1.53782 * 87.08218 * 220.02094 * 10 9 8 12 12 C 1.53001 * 113.61350 * 270.88391 * 11 10 9 13 13 C 1.52998 * 113.61885 * 139.98216 * 11 10 9 14 14 C 1.53784 * 113.61509 * 174.99785 * 9 8 6 15 15 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 5 4 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 5 18 18 N 1.46505 * 111.00202 * 204.91694 * 16 15 5 19 19 C 1.36935 * 120.00217 * 273.54861 * 18 16 15 20 20 H 1.08006 * 119.99642 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00007 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47272 * 59.99546 * 23 21 19 25 25 H 1.48501 * 109.47288 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46873 * 299.99485 * 23 21 19 27 27 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 28 28 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 29 29 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 30 30 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 31 31 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 32 32 H 1.09001 * 109.46677 * 299.99714 * 8 6 5 33 33 H 1.09003 * 109.47400 * 59.99845 * 8 6 5 34 34 H 1.08995 * 112.85542 * 43.79781 * 9 8 6 35 35 H 1.08998 * 113.61215 * 334.56303 * 10 9 8 36 36 H 1.08996 * 113.61604 * 105.47098 * 10 9 8 37 37 H 1.08993 * 109.47706 * 157.49315 * 12 11 10 38 38 H 1.09001 * 109.47187 * 277.49651 * 12 11 10 39 39 H 1.09000 * 109.47086 * 37.49589 * 12 11 10 40 40 H 1.09003 * 109.46892 * 322.49773 * 13 11 10 41 41 H 1.08992 * 109.47232 * 82.49709 * 13 11 10 42 42 H 1.08997 * 109.47192 * 202.50657 * 13 11 10 43 43 H 1.08993 * 113.61650 * 254.52606 * 14 9 8 44 44 H 1.09000 * 113.61496 * 25.43381 * 14 9 8 45 45 H 1.08999 * 110.36956 * 142.96999 * 15 5 4 46 46 H 1.09001 * 110.36709 * 265.18192 * 15 5 4 47 47 H 0.96998 * 119.99743 * 93.55096 * 18 16 15 48 48 H 0.96989 * 120.00348 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9886 -2.3874 -1.4940 7 8 3.7131 -2.5589 -2.6626 8 6 5.1630 -3.1076 -0.8832 9 6 5.8315 -3.9843 -1.9440 10 6 5.2179 -5.3899 -2.0575 11 6 6.6526 -5.9169 -2.2268 12 6 7.1263 -5.9484 -3.6813 13 6 6.9147 -7.2300 -1.4866 14 6 7.1176 -4.6709 -1.4545 15 6 3.4656 -1.2541 0.6849 16 6 2.0831 -0.7972 1.2139 17 1 1.4480 -1.6542 1.4382 18 7 2.2294 0.0667 2.3880 19 6 2.3264 -0.4860 3.6370 20 1 2.2947 -1.5590 3.7567 21 6 2.4645 0.3326 4.7495 22 7 2.5027 1.6401 4.6038 23 14 2.5976 -0.4215 6.4533 24 1 3.7873 -1.3084 6.5106 25 1 2.7355 0.6584 7.4633 26 1 1.3751 -1.2140 6.7407 27 1 -0.3633 -1.0272 0.0321 28 1 -0.3634 0.5414 0.8735 29 1 -0.3633 0.4858 -0.9056 30 1 2.3741 -0.1026 -1.9977 31 1 1.3121 -1.4741 -1.5791 32 1 5.8814 -2.3784 -0.5085 33 1 4.8176 -3.7333 -0.0602 34 1 5.9448 -3.4773 -2.9022 35 1 4.7332 -5.7298 -1.1423 36 1 4.5960 -5.5246 -2.9424 37 1 8.2158 -5.9363 -3.7091 38 1 6.7606 -6.8553 -4.1629 39 1 6.7397 -5.0761 -4.2083 40 1 6.3855 -7.2217 -0.5337 41 1 6.5609 -8.0648 -2.0914 42 1 7.9843 -7.3388 -1.3072 43 1 8.0291 -4.2254 -1.8527 44 1 7.1521 -4.8144 -0.3746 45 1 3.7975 -2.1479 1.2131 46 1 4.1987 -0.4550 0.7952 47 1 2.2575 1.0303 2.2805 48 1 2.5996 2.2121 5.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055002544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:48 Heat of formation + Delta-G solvation = -24.110426 kcal Electronic energy + Delta-G solvation = -24198.604051 eV Core-core repulsion = 20867.498289 eV Total energy + Delta-G solvation = -3331.105762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32066 -39.29774 -37.41890 -34.07403 -32.74256 -32.06138 -30.73870 -28.40645 -27.59435 -27.49355 -25.78958 -25.76252 -23.98896 -21.79322 -20.89422 -19.88280 -18.86378 -18.36253 -17.19638 -16.70280 -16.00706 -15.74888 -14.92948 -14.74829 -14.41801 -14.31986 -13.95768 -13.54760 -13.48379 -13.11370 -12.98744 -12.88330 -12.78614 -12.57986 -12.25766 -12.08683 -11.95196 -11.78959 -11.63925 -11.48312 -11.12993 -11.01874 -10.84462 -10.75945 -10.63087 -10.60974 -10.29939 -10.13856 -10.06291 -9.94919 -9.80305 -9.52858 -9.03673 -8.30852 -7.11847 -5.88220 -3.19166 2.89832 3.27483 3.37416 3.42786 3.43231 4.33904 4.45407 4.50407 4.56768 4.64682 4.83904 5.02860 5.12580 5.16667 5.21601 5.25547 5.42522 5.44679 5.50088 5.52572 5.61381 5.63892 5.66033 5.70426 5.75269 5.76868 5.80577 5.81497 5.82938 5.88106 5.93162 6.00608 6.08307 6.08945 6.20220 6.24194 6.35602 6.36680 6.45375 6.50451 6.54929 6.62209 6.85741 7.59402 7.84726 8.29089 8.43558 9.41234 9.94971 10.30044 11.33654 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003524 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.662701 B = 7944.458663 C = 9340.194257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.116 3.884 5 N -0.615 5.615 6 C 0.526 3.474 7 O -0.555 6.555 8 C -0.127 4.127 9 C -0.091 4.091 10 C -0.124 4.124 11 C -0.092 4.092 12 C -0.128 4.128 13 C -0.135 4.135 14 C -0.129 4.129 15 C 0.073 3.927 16 C 0.177 3.823 17 H 0.064 0.936 18 N -0.711 5.711 19 C -0.249 4.249 20 H 0.071 0.929 21 C -0.007 4.007 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.387 0.613 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -11.484 -12.919 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.349 5.349 6 C 0.315 3.685 7 O -0.434 6.434 8 C -0.167 4.167 9 C -0.110 4.110 10 C -0.161 4.161 11 C -0.092 4.092 12 C -0.185 4.185 13 C -0.192 4.192 14 C -0.166 4.166 15 C -0.053 4.053 16 C 0.065 3.935 17 H 0.082 0.918 18 N -0.351 5.351 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.222 0.778 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.861 -11.698 -13.386 18.719 hybrid contribution 0.173 0.061 1.109 1.124 sum 6.034 -11.637 -12.278 17.960 Atomic orbital electron populations 1.21653 0.93956 1.01764 1.01745 1.22515 0.96418 0.99780 0.94601 0.89802 1.21932 0.87660 0.94313 0.96766 1.48592 1.29920 1.43927 1.12475 1.20371 0.83569 0.78647 0.85918 1.90645 1.71323 1.64738 1.16677 1.21657 0.95912 0.99659 0.99467 1.22269 0.95457 0.94455 0.98797 1.23113 0.95406 0.95467 1.02107 1.21765 0.97075 0.94597 0.95715 1.21587 1.00734 1.01962 0.94215 1.21727 1.01310 0.96298 0.99879 1.23143 0.97332 0.95975 1.00193 1.23497 1.02461 1.00730 0.78624 1.21410 0.91791 0.93661 0.86646 0.91794 1.42285 1.86900 1.05168 1.00727 1.19182 1.43258 0.91853 0.83688 0.91062 1.24758 1.02308 0.95335 0.98000 1.69642 1.56375 1.02103 1.29552 0.86270 0.77967 0.77845 0.84085 1.21137 1.21642 1.21152 0.92862 0.91445 0.93197 0.92190 0.91814 0.88920 0.88959 0.88409 0.90333 0.91381 0.92599 0.92590 0.92206 0.92530 0.92827 0.92754 0.91528 0.89939 0.91305 0.91222 0.77846 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.14 37.15 0.34 -1.56 16 2 C -0.11 -1.78 3.19 -88.65 -0.28 -2.06 16 3 H 0.08 1.35 8.00 -51.93 -0.42 0.94 16 4 C 0.12 1.77 6.46 -3.07 -0.02 1.75 16 5 N -0.62 -9.81 3.33 -170.52 -0.57 -10.37 16 6 C 0.53 8.34 7.85 -10.99 -0.09 8.26 16 7 O -0.55 -10.27 16.08 5.56 0.09 -10.18 16 8 C -0.13 -1.59 4.54 -27.89 -0.13 -1.72 16 9 C -0.09 -1.05 2.80 -89.80 -0.25 -1.30 16 10 C -0.12 -1.36 6.75 -25.92 -0.17 -1.53 16 11 C -0.09 -0.85 1.39 -153.69 -0.21 -1.07 16 12 C -0.13 -1.11 9.07 37.16 0.34 -0.77 16 13 C -0.13 -1.12 9.19 37.16 0.34 -0.78 16 14 C -0.13 -1.24 6.79 -25.91 -0.18 -1.41 16 15 C 0.07 1.22 6.39 -2.53 -0.02 1.20 16 16 C 0.18 3.26 3.14 -65.64 -0.21 3.05 16 17 H 0.06 1.22 8.03 -51.93 -0.42 0.80 16 18 N -0.71 -16.39 5.28 -51.21 -0.27 -16.66 16 19 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 20 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 23 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.08 7.55 -51.93 -0.39 0.69 16 34 H 0.10 1.26 7.19 -51.93 -0.37 0.89 16 35 H 0.08 0.85 7.72 -51.93 -0.40 0.45 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.56 7.34 -51.93 -0.38 0.18 16 40 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 45 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.39 9.55 7.72 -40.82 -0.31 9.24 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -29.07 379.38 -9.05 -38.12 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.93 Total: 7.83 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.78 Total: -4.80 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.11 Total: -53.00 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.07 -9.05 -38.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055002544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.006 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds