Wall clock time and date at job start Fri Apr 10 2020 20:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88644 * 2 1 4 4 C 1.54904 * 111.00304 * 123.92847 * 2 1 3 5 5 N 1.47427 * 104.83039 * 155.08596 * 4 2 1 6 6 C 1.34777 * 125.64714 * 155.91404 * 5 4 2 7 7 O 1.21277 * 120.00332 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99771 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46964 * 179.97438 * 8 6 5 10 10 C 1.53781 * 113.61359 * 272.49585 * 9 8 6 11 11 C 1.53782 * 87.08268 * 220.01842 * 10 9 8 12 12 C 1.52995 * 113.61745 * 270.88547 * 11 10 9 13 13 C 1.52998 * 113.61181 * 139.98038 * 11 10 9 14 14 C 1.53778 * 87.07945 * 25.43541 * 11 10 9 15 15 C 1.47486 * 108.75805 * 335.88531 * 5 4 2 16 16 C 1.54318 * 107.03710 * 1.02957 * 15 5 4 17 17 H 1.09002 * 110.72246 * 140.68541 * 16 15 5 18 18 N 1.46496 * 110.72309 * 263.78912 * 16 15 5 19 19 C 1.36945 * 119.99718 * 271.15655 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09002 * 109.47380 * 183.87335 * 1 2 3 28 28 H 1.09002 * 109.47485 * 303.87719 * 1 2 3 29 29 H 1.09008 * 109.47341 * 63.87842 * 1 2 3 30 30 H 1.08998 * 110.36447 * 273.91717 * 4 2 1 31 31 H 1.08992 * 110.37124 * 36.13392 * 4 2 1 32 32 H 1.08994 * 109.47710 * 299.99679 * 8 6 5 33 33 H 1.09004 * 109.47175 * 60.00258 * 8 6 5 34 34 H 1.08999 * 112.85310 * 43.80519 * 9 8 6 35 35 H 1.08999 * 113.62116 * 334.57295 * 10 9 8 36 36 H 1.09007 * 113.61354 * 105.47534 * 10 9 8 37 37 H 1.08997 * 109.47366 * 157.49364 * 12 11 10 38 38 H 1.09001 * 109.47329 * 277.49736 * 12 11 10 39 39 H 1.09003 * 109.47178 * 37.49971 * 12 11 10 40 40 H 1.08997 * 109.47552 * 322.50674 * 13 11 10 41 41 H 1.09004 * 109.46972 * 82.50982 * 13 11 10 42 42 H 1.08996 * 109.47348 * 202.50221 * 13 11 10 43 43 H 1.08999 * 113.61867 * 220.01822 * 14 11 10 44 44 H 1.09008 * 113.61440 * 89.11229 * 14 11 10 45 45 H 1.08997 * 110.03701 * 241.66362 * 15 5 4 46 46 H 1.09006 * 109.96013 * 120.35364 * 15 5 4 47 47 H 0.96996 * 120.00499 * 91.15386 * 18 16 15 48 48 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8072 1.1999 5 7 3.4271 -1.2434 0.7727 6 6 4.4476 -1.5624 1.5933 7 8 4.3008 -1.5013 2.7956 8 6 5.7710 -1.9949 1.0168 9 6 6.7489 -2.2959 2.1544 10 6 7.5303 -1.0626 2.6375 11 6 8.7590 -1.9811 2.7456 12 6 8.8943 -2.6660 4.1070 13 6 10.0588 -1.3234 2.2780 14 6 8.0954 -2.8636 1.6753 15 6 3.4690 -1.2739 -0.7012 16 6 2.0861 -0.8075 -1.2026 17 1 2.1891 -0.1698 -2.0806 18 7 1.2267 -1.9568 -1.4970 19 6 1.2429 -2.5221 -2.7442 20 1 1.8888 -2.1203 -3.5108 21 6 0.4290 -3.6114 -3.0231 22 7 -0.3586 -4.1007 -2.0889 23 14 0.4505 -4.3821 -4.7246 24 1 -0.5005 -5.5219 -4.7638 25 1 0.0501 -3.3678 -5.7325 26 1 1.8196 -4.8697 -5.0298 27 1 -0.3634 -1.0253 0.0694 28 1 -0.3634 0.5728 0.8532 29 1 -0.3634 0.4525 -0.9228 30 1 2.1560 -0.1729 2.0835 31 1 1.4508 -1.6699 1.4029 32 1 5.6289 -2.8910 0.4128 33 1 6.1741 -1.1967 0.3934 34 1 6.2951 -2.8707 2.9617 35 1 7.6314 -0.2854 1.8800 36 1 7.1875 -0.6771 3.5978 37 1 9.5029 -3.5642 4.0030 38 1 9.3707 -1.9839 4.8112 39 1 7.9057 -2.9380 4.4768 40 1 9.8554 -0.6900 1.4146 41 1 10.4698 -0.7167 3.0849 42 1 10.7774 -2.0949 2.0014 43 1 8.2088 -3.9321 1.8586 44 1 8.3510 -2.5787 0.6546 45 1 3.6664 -2.2881 -1.0483 46 1 4.2428 -0.5981 -1.0656 47 1 0.6463 -2.3174 -0.8086 48 1 -0.9276 -4.8617 -2.2839 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055002545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:50 Heat of formation + Delta-G solvation = -20.187105 kcal Electronic energy + Delta-G solvation = -24396.898778 eV Core-core repulsion = 21065.963144 eV Total energy + Delta-G solvation = -3330.935634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26690 -39.26495 -37.42916 -33.90312 -32.61813 -31.99436 -30.49334 -28.36101 -27.67449 -27.57557 -25.75988 -25.64849 -23.84866 -22.21773 -20.88458 -19.26846 -18.72180 -18.34086 -17.53780 -16.51728 -15.96416 -15.28039 -15.20319 -14.62791 -14.36043 -14.27609 -14.13890 -13.76212 -13.33990 -13.06801 -12.93601 -12.83464 -12.71953 -12.25018 -12.05421 -11.99615 -11.91613 -11.80714 -11.55194 -11.45476 -11.12980 -10.93439 -10.82660 -10.75332 -10.60823 -10.45648 -10.30350 -10.11483 -10.03051 -9.93519 -9.68104 -9.44288 -9.01589 -8.19461 -7.08447 -5.85454 -3.15701 2.99855 3.38451 3.39265 3.43467 3.44599 4.36180 4.50327 4.51141 4.58798 4.67580 4.88789 5.05353 5.20053 5.23266 5.27762 5.34905 5.44533 5.45574 5.50068 5.55252 5.63158 5.66834 5.67710 5.73258 5.78545 5.79203 5.83007 5.84649 5.88919 5.95547 5.97732 6.10709 6.11232 6.19571 6.27175 6.35448 6.36881 6.39405 6.53463 6.54282 6.68277 6.76168 6.93471 7.61287 7.95948 8.32418 8.53663 9.44185 9.99232 10.34022 11.36556 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.003456 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.683766 B = 8100.998101 C = 9042.468859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.115 3.885 5 N -0.610 5.610 6 C 0.526 3.474 7 O -0.556 6.556 8 C -0.126 4.126 9 C -0.091 4.091 10 C -0.123 4.123 11 C -0.092 4.092 12 C -0.128 4.128 13 C -0.134 4.134 14 C -0.129 4.129 15 C 0.072 3.928 16 C 0.172 3.828 17 H 0.070 0.930 18 N -0.712 5.712 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.286 1.286 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.348 7.051 7.276 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 H 0.095 0.905 4 C -0.008 4.008 5 N -0.343 5.343 6 C 0.315 3.685 7 O -0.435 6.435 8 C -0.166 4.166 9 C -0.110 4.110 10 C -0.160 4.160 11 C -0.092 4.092 12 C -0.185 4.185 13 C -0.191 4.191 14 C -0.166 4.166 15 C -0.054 4.054 16 C 0.059 3.941 17 H 0.088 0.912 18 N -0.353 5.353 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.222 0.778 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.321 6.978 7.766 18.540 hybrid contribution -0.202 -0.686 -0.887 1.139 sum 15.119 6.293 6.879 17.763 Atomic orbital electron populations 1.21538 0.93417 1.02961 1.00885 1.22622 0.96937 0.98411 0.95491 0.90455 1.22215 0.83185 0.98214 0.97139 1.48619 1.11973 1.65899 1.07803 1.20313 0.85036 0.76994 0.86191 1.90642 1.83544 1.54547 1.14794 1.21637 0.92767 1.02980 0.99202 1.22269 0.92985 0.98193 0.97516 1.23105 0.95042 0.96200 1.01684 1.21764 0.94486 0.97118 0.95785 1.21589 1.02034 0.99886 0.95029 1.21722 0.96543 1.00060 1.00818 1.23141 0.95643 0.99272 0.98588 1.23349 1.01376 1.02088 0.78602 1.21201 0.88344 0.89851 0.94674 0.91183 1.42441 1.47289 1.33005 1.12557 1.19185 1.19831 1.09817 0.89023 0.91055 1.24751 0.99127 0.98827 0.97778 1.69649 1.28666 1.26857 1.32504 0.86273 0.77248 0.78720 0.83930 1.21713 1.21196 1.21227 0.91214 0.93743 0.92148 0.91480 0.91433 0.88849 0.89288 0.88347 0.90463 0.91395 0.92585 0.92610 0.92141 0.92621 0.92847 0.92765 0.91492 0.90041 0.90473 0.92781 0.77753 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.85 37.16 0.33 -1.74 16 2 C -0.11 -1.80 3.51 -88.47 -0.31 -2.11 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.11 1.94 6.35 -2.53 -0.02 1.93 16 5 N -0.61 -10.35 3.34 -170.16 -0.57 -10.92 16 6 C 0.53 8.88 7.85 -10.99 -0.09 8.79 16 7 O -0.56 -10.95 16.01 5.56 0.09 -10.86 16 8 C -0.13 -1.65 4.73 -27.88 -0.13 -1.78 16 9 C -0.09 -1.10 2.80 -89.80 -0.25 -1.35 16 10 C -0.12 -1.37 6.75 -25.92 -0.17 -1.54 16 11 C -0.09 -0.87 1.39 -153.70 -0.21 -1.08 16 12 C -0.13 -1.16 9.07 37.15 0.34 -0.82 16 13 C -0.13 -1.10 9.19 37.16 0.34 -0.76 16 14 C -0.13 -1.28 6.79 -25.92 -0.18 -1.46 16 15 C 0.07 1.19 6.26 -2.81 -0.02 1.17 16 16 C 0.17 3.11 3.37 -66.10 -0.22 2.89 16 17 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 18 N -0.71 -16.41 4.56 -51.65 -0.24 -16.65 16 19 C -0.25 -6.40 9.97 -15.06 -0.15 -6.55 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 23 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.07 1.26 7.98 -51.93 -0.41 0.84 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.02 7.84 -51.93 -0.41 0.61 16 34 H 0.10 1.37 7.19 -51.93 -0.37 1.00 16 35 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.60 7.34 -51.93 -0.38 0.22 16 40 H 0.05 0.44 7.94 -51.93 -0.41 0.03 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.08 0.75 8.06 -51.92 -0.42 0.34 16 45 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.39 9.65 6.21 -40.82 -0.25 9.40 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -29.59 376.73 -9.02 -38.61 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -8.84 Total: 8.66 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.84 Total: -4.73 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.08 Total: -53.83 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.59 -9.02 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055002545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.419 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds