Wall clock time and date at job start Fri Apr 10 2020 20:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34776 * 125.64906 * 204.09456 * 5 4 2 7 7 O 1.21278 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46891 * 179.97438 * 8 6 5 10 10 C 1.53778 * 113.61602 * 272.49738 * 9 8 6 11 11 C 1.53776 * 87.08010 * 220.01796 * 10 9 8 12 12 C 1.52997 * 113.61877 * 270.88223 * 11 10 9 13 13 C 1.53011 * 113.68880 * 139.99247 * 11 10 9 14 14 C 1.53775 * 87.08399 * 25.43545 * 11 10 9 15 15 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 16 16 C 1.54327 * 107.27336 * 358.94217 * 15 5 4 17 17 H 1.09002 * 110.72173 * 219.44580 * 16 15 5 18 18 N 1.46504 * 110.72122 * 96.16784 * 16 15 5 19 19 C 1.36936 * 119.99698 * 86.45467 * 18 16 15 20 20 H 1.07997 * 120.00222 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99415 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99433 * 180.02562 * 21 19 18 23 23 Si 1.86790 * 120.00397 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47184 * 89.99490 * 23 21 19 25 25 H 1.48501 * 109.47366 * 209.99590 * 23 21 19 26 26 H 1.48505 * 109.47314 * 329.99969 * 23 21 19 27 27 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 28 28 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 29 29 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 30 30 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 31 31 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 32 32 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 33 33 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 34 34 H 1.08998 * 112.84525 * 43.80841 * 9 8 6 35 35 H 1.09006 * 113.61217 * 334.57074 * 10 9 8 36 36 H 1.08996 * 113.61362 * 105.46945 * 10 9 8 37 37 H 1.08990 * 109.47407 * 157.49910 * 12 11 10 38 38 H 1.09003 * 109.47196 * 277.50056 * 12 11 10 39 39 H 1.09004 * 109.46664 * 37.49545 * 12 11 10 40 40 H 1.08997 * 109.46487 * 322.46393 * 13 11 10 41 41 H 1.08997 * 109.46889 * 82.46037 * 13 11 10 42 42 H 1.08997 * 109.46769 * 202.46438 * 13 11 10 43 43 H 1.09004 * 113.61551 * 220.01946 * 14 11 10 44 44 H 1.09001 * 113.62187 * 89.11314 * 14 11 10 45 45 H 1.08997 * 109.88723 * 239.52626 * 15 5 4 46 46 H 1.08998 * 109.88661 * 118.35607 * 15 5 4 47 47 H 0.96994 * 119.99856 * 266.45473 * 18 16 15 48 48 H 0.96998 * 119.99751 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4476 -1.5618 -1.5940 7 8 4.3008 -1.5000 -2.7963 8 6 5.7710 -1.9946 -1.0176 9 6 6.7486 -2.2962 -2.1554 10 6 6.6674 -3.7430 -2.6701 11 6 8.2017 -3.7113 -2.7672 12 6 8.7203 -3.2050 -4.1146 13 6 8.8728 -5.0128 -2.3234 14 6 8.1702 -2.6306 -1.6737 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 2.1921 -0.1699 2.0797 18 7 1.2267 -1.9574 1.4963 19 6 1.2815 -2.5563 2.7266 20 1 1.9579 -2.1809 3.4802 21 6 0.4668 -3.6451 3.0053 22 7 0.5191 -4.2204 4.1880 23 14 -0.7036 -4.2938 1.7020 24 1 -0.0162 -5.3310 0.8915 25 1 -1.8955 -4.8882 2.3588 26 1 -1.1295 -3.1779 0.8195 27 1 -0.3634 0.4521 0.9229 28 1 -0.3634 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0699 30 1 2.1559 -0.1721 -2.0837 31 1 1.4524 -1.6705 -1.4043 32 1 6.1740 -1.1969 -0.3937 33 1 5.6287 -2.8911 -0.4142 34 1 6.7206 -1.5474 -2.9470 35 1 6.2911 -4.4493 -1.9300 36 1 6.1706 -3.8356 -3.6358 37 1 9.7378 -2.8328 -3.9957 38 1 8.7142 -4.0217 -4.8365 39 1 8.0782 -2.3997 -4.4716 40 1 8.3336 -5.4274 -1.4717 41 1 8.8581 -5.7280 -3.1459 42 1 9.9046 -4.8101 -2.0366 43 1 8.8866 -1.8251 -1.8351 44 1 8.2048 -3.0327 -0.6612 45 1 4.2425 -0.5998 1.0600 46 1 3.6649 -2.2894 1.0402 47 1 0.6190 -2.2943 0.8196 48 1 -0.0499 -4.9814 4.3827 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055002546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:52 Heat of formation + Delta-G solvation = -16.052585 kcal Electronic energy + Delta-G solvation = -24544.321549 eV Core-core repulsion = 21213.565201 eV Total energy + Delta-G solvation = -3330.756348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32785 -39.37543 -37.57806 -34.04870 -32.69683 -32.06431 -30.86034 -28.44351 -28.07897 -27.57031 -25.80380 -25.75680 -23.66706 -22.19423 -20.91947 -19.47705 -18.78633 -18.33904 -17.90800 -16.67645 -15.99327 -15.74313 -14.85184 -14.75260 -14.44237 -14.28003 -14.24764 -13.86304 -13.53443 -13.20422 -12.86783 -12.81030 -12.74573 -12.33998 -12.20609 -12.13122 -11.92956 -11.86038 -11.77704 -11.48998 -11.46735 -11.06179 -10.86884 -10.82232 -10.61002 -10.55897 -10.34302 -10.12339 -10.05024 -10.02802 -9.64846 -9.53487 -9.06229 -8.30711 -7.40419 -5.87047 -3.23907 2.90478 3.28932 3.30153 3.34022 3.40048 4.35868 4.47929 4.50311 4.58504 4.63829 4.78551 5.02649 5.06312 5.08645 5.17866 5.27186 5.30636 5.44579 5.46685 5.49219 5.53733 5.62604 5.64357 5.66161 5.71471 5.75621 5.79357 5.82318 5.83708 5.84050 5.90704 6.00717 6.07091 6.10360 6.11835 6.16497 6.24579 6.37760 6.39126 6.51488 6.55486 6.64228 6.67747 7.84903 7.88126 8.31940 8.43765 9.09172 9.81738 10.00482 11.30736 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.003851 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.432617 B = 7269.591215 C = 8142.611208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.113 3.887 5 N -0.612 5.612 6 C 0.526 3.474 7 O -0.555 6.555 8 C -0.127 4.127 9 C -0.091 4.091 10 C -0.124 4.124 11 C -0.091 4.091 12 C -0.128 4.128 13 C -0.135 4.135 14 C -0.128 4.128 15 C 0.072 3.928 16 C 0.178 3.822 17 H 0.078 0.922 18 N -0.737 5.737 19 C -0.250 4.250 20 H 0.093 0.907 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.879 3.121 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.364 0.636 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.990 5.759 -12.122 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.345 5.345 6 C 0.316 3.684 7 O -0.434 6.434 8 C -0.167 4.167 9 C -0.110 4.110 10 C -0.162 4.162 11 C -0.091 4.091 12 C -0.185 4.185 13 C -0.193 4.193 14 C -0.166 4.166 15 C -0.054 4.054 16 C 0.067 3.933 17 H 0.096 0.904 18 N -0.380 5.380 19 C -0.380 4.380 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.576 5.576 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.202 1.202 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.198 0.802 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.010 5.679 -12.533 18.936 hybrid contribution -0.913 -0.696 -0.670 1.329 sum 12.097 4.982 -13.204 18.588 Atomic orbital electron populations 1.21585 0.93683 1.02372 1.01499 1.22650 0.96717 0.98901 0.95371 0.89814 1.22223 0.83329 0.98054 0.97343 1.48536 1.11956 1.66119 1.07884 1.20354 0.85094 0.76810 0.86164 1.90645 1.83509 1.54429 1.14789 1.21656 0.92515 1.03213 0.99271 1.22267 0.93480 0.97961 0.97280 1.23117 0.94800 0.96464 1.01775 1.21760 0.96040 0.95632 0.95694 1.21587 1.00658 1.00999 0.95241 1.21733 1.00213 0.96269 1.01041 1.23137 0.96574 0.98249 0.98620 1.23208 1.01149 1.02530 0.78532 1.21164 0.88067 0.89114 0.94994 0.90394 1.42801 1.46159 1.34524 1.14513 1.19048 1.19778 1.09540 0.89593 0.88957 1.24647 0.99431 0.98197 0.96316 1.69691 1.42548 1.24776 1.20620 0.86652 0.81541 0.79055 0.81797 1.21066 1.21586 1.20211 0.91684 0.93286 0.92118 0.91175 0.91892 0.89063 0.88807 0.88455 0.90228 0.91403 0.92618 0.92583 0.92244 0.92462 0.92817 0.92766 0.91583 0.89930 0.92308 0.90186 0.80184 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.85 37.15 0.33 -1.60 16 2 C -0.12 -1.69 3.51 -88.47 -0.31 -2.01 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.11 1.78 6.35 -2.53 -0.02 1.76 16 5 N -0.61 -9.81 3.33 -170.52 -0.57 -10.38 16 6 C 0.53 8.48 7.85 -10.99 -0.09 8.39 16 7 O -0.55 -10.46 16.01 5.56 0.09 -10.38 16 8 C -0.13 -1.59 4.73 -27.88 -0.13 -1.72 16 9 C -0.09 -1.07 2.80 -89.81 -0.25 -1.32 16 10 C -0.12 -1.46 6.75 -25.92 -0.17 -1.63 16 11 C -0.09 -0.89 1.39 -153.70 -0.21 -1.10 16 12 C -0.13 -1.14 9.07 37.16 0.34 -0.80 16 13 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 14 C -0.13 -1.23 6.79 -25.92 -0.18 -1.41 16 15 C 0.07 1.13 6.23 -3.06 -0.02 1.11 16 16 C 0.18 3.07 3.37 -66.09 -0.22 2.84 16 17 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 18 N -0.74 -15.98 4.42 -51.64 -0.23 -16.21 16 19 C -0.25 -6.55 10.46 -15.06 -0.16 -6.71 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -28.08 13.97 55.49 0.78 -27.31 16 23 Si 0.88 21.44 27.74 -169.99 -4.71 16.72 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.00 6.38 -51.93 -0.33 0.67 16 30 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 31 H 0.06 1.07 7.99 -51.93 -0.41 0.65 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.17 7.84 -51.93 -0.41 0.76 16 34 H 0.10 1.26 7.19 -51.93 -0.37 0.88 16 35 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 36 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 40 H 0.06 0.52 7.95 -51.93 -0.41 0.10 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 47 H 0.36 7.97 3.96 -40.82 -0.16 7.81 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -30.52 373.51 -8.66 -39.18 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.80 Total: 7.58 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.85 Total: -4.84 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.02 Total: -53.89 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.52 -8.66 -39.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055002546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.125 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds