Wall clock time and date at job start Fri Apr 10 2020 20:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.99918 * 2 1 4 4 C 1.54323 * 109.88264 * 121.09118 * 2 1 3 5 5 H 1.09001 * 110.72228 * 215.58593 * 4 2 1 6 6 N 1.46499 * 110.72352 * 338.68916 * 4 2 1 7 7 C 1.36939 * 120.00027 * 202.56135 * 6 4 2 8 8 H 1.08004 * 119.99968 * 359.97438 * 7 6 4 9 9 C 1.38807 * 119.99986 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00161 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99933 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47506 * 89.99571 * 11 9 7 13 13 H 1.48506 * 109.47084 * 209.99456 * 11 9 7 14 14 H 1.48500 * 109.47089 * 329.99510 * 11 9 7 15 15 C 1.55160 * 103.10172 * 97.14133 * 4 2 1 16 16 C 1.55391 * 101.36538 * 35.49065 * 15 4 2 17 17 N 1.47025 * 109.88277 * 238.90184 * 2 1 3 18 18 C 1.34777 * 125.64724 * 59.55837 * 17 2 1 19 19 O 1.21277 * 119.99840 * 355.43778 * 18 17 2 20 20 C 1.50700 * 119.99951 * 175.43793 * 18 17 2 21 21 H 1.09003 * 110.43293 * 337.84129 * 20 18 17 22 22 C 1.54880 * 110.48714 * 215.30177 * 20 18 17 23 23 C 1.54893 * 102.74909 * 203.37892 * 22 20 18 24 24 C 1.54262 * 104.19444 * 37.94178 * 23 22 20 25 25 C 1.53872 * 106.60070 * 336.38928 * 24 23 22 26 26 C 1.52997 * 110.03642 * 240.71587 * 25 24 23 27 27 C 1.53005 * 110.03376 * 119.28356 * 25 24 23 28 28 H 1.09000 * 109.47391 * 298.90563 * 1 2 3 29 29 H 1.08994 * 109.47280 * 58.90980 * 1 2 3 30 30 H 1.09004 * 109.46770 * 178.90834 * 1 2 3 31 31 H 0.96998 * 120.00034 * 22.55291 * 6 4 2 32 32 H 0.97004 * 120.00023 * 180.02562 * 10 9 7 33 33 H 1.08996 * 111.00951 * 153.66682 * 15 4 2 34 34 H 1.09006 * 111.00007 * 277.52012 * 15 4 2 35 35 H 1.09003 * 110.33908 * 204.17088 * 16 15 4 36 36 H 1.09002 * 110.44154 * 81.92301 * 16 15 4 37 37 H 1.09001 * 110.75826 * 321.69091 * 22 20 18 38 38 H 1.09000 * 110.75946 * 84.87924 * 22 20 18 39 39 H 1.09001 * 110.48720 * 156.61688 * 23 22 20 40 40 H 1.08994 * 110.48571 * 279.13214 * 23 22 20 41 41 H 1.09004 * 110.03475 * 95.67197 * 24 23 22 42 42 H 1.08998 * 110.03560 * 217.10228 * 24 23 22 43 43 H 1.08996 * 109.47663 * 182.33963 * 26 25 24 44 44 H 1.09003 * 109.47248 * 302.34139 * 26 25 24 45 45 H 1.09002 * 109.46754 * 62.34098 * 26 25 24 46 46 H 1.09002 * 109.46939 * 297.83845 * 27 25 24 47 47 H 1.08995 * 109.46941 * 57.83799 * 27 25 24 48 48 H 1.09003 * 109.46898 * 177.84057 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.9657 -0.2831 1.6183 6 7 1.0307 -0.7989 2.2892 7 6 1.3954 -0.9846 3.5959 8 1 2.4381 -1.0950 3.8551 9 6 0.4251 -1.0310 4.5875 10 7 0.7756 -1.2100 5.8434 11 14 -1.3783 -0.8408 4.1391 12 1 -1.9608 -2.1764 3.8529 13 1 -2.1068 -0.2155 5.2721 14 1 -1.5009 0.0208 2.9358 15 6 2.3511 -2.1713 0.6969 16 6 2.8569 -1.8497 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3846 -2.4657 19 8 1.0129 0.5242 -2.7181 20 6 2.4379 -1.1453 -3.5852 21 1 3.3461 -1.6318 -3.2294 22 6 2.7579 -0.1989 -4.7687 23 6 2.8350 -1.1706 -5.9724 24 6 1.7175 -2.1988 -5.7006 25 6 1.4650 -2.1828 -4.1828 26 6 1.7444 -3.5654 -3.5903 27 6 0.0194 -1.7715 -3.8963 28 1 -0.3634 0.4967 0.8996 29 1 -0.3633 0.5306 -0.8800 30 1 -0.3633 -1.0275 -0.0196 31 1 0.0943 -0.7000 2.0564 32 1 0.0975 -1.2428 6.5363 33 1 3.1248 -2.6629 1.2867 34 1 1.4437 -2.7745 0.6653 35 1 2.7088 -2.7081 -1.3921 36 1 3.9094 -1.5672 -0.7147 37 1 1.9578 0.5278 -4.9095 38 1 3.7121 0.3047 -4.6135 39 1 2.6455 -0.6388 -6.9048 40 1 3.8078 -1.6612 -6.0049 41 1 0.8101 -1.9136 -6.2330 42 1 2.0390 -3.1916 -6.0152 43 1 1.5231 -3.5550 -2.5231 44 1 1.1158 -4.3063 -4.0845 45 1 2.7934 -3.8202 -3.7413 46 1 -0.1508 -0.7604 -4.2661 47 1 -0.6605 -2.4608 -4.3969 48 1 -0.1603 -1.8003 -2.8215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074809264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:57 Heat of formation + Delta-G solvation = -31.041222 kcal Electronic energy + Delta-G solvation = -25678.840251 eV Core-core repulsion = 22347.433947 eV Total energy + Delta-G solvation = -3331.406304 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78630 -38.78477 -37.02795 -34.32504 -32.42338 -31.83905 -30.82102 -30.00190 -28.65748 -27.45508 -25.46940 -24.95412 -23.32145 -22.61101 -21.17992 -20.08582 -19.06115 -18.11371 -17.90764 -17.05232 -15.89032 -15.60344 -15.45926 -14.69426 -14.41618 -14.14260 -14.08177 -13.57126 -13.52830 -13.26066 -13.02026 -12.89908 -12.65910 -12.32399 -12.10133 -11.95621 -11.91212 -11.58346 -11.54964 -11.35342 -11.30204 -11.14113 -10.93386 -10.85612 -10.75836 -10.66577 -10.63553 -10.54296 -10.30265 -10.06454 -9.64235 -9.37357 -8.98515 -8.41751 -7.34378 -5.83079 -3.19639 2.76051 3.13733 3.33570 3.36750 3.42365 4.23344 4.37311 4.44057 4.53740 4.81366 4.92972 5.03645 5.08493 5.13190 5.17552 5.19783 5.24813 5.25186 5.41677 5.42928 5.50277 5.52919 5.55323 5.65078 5.67600 5.69602 5.70944 5.82983 5.86705 5.87187 5.92387 5.99879 6.04007 6.06897 6.15489 6.17286 6.20486 6.32614 6.40587 6.50319 6.59742 6.63088 6.85216 7.75926 7.92543 8.35927 8.37008 9.13536 9.85853 10.04880 11.34891 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.003982 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.156068 B = 7030.372522 C = 7147.100675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.073 0.927 4 C 0.179 3.821 5 H 0.072 0.928 6 N -0.741 5.741 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.931 5.931 11 Si 0.878 3.122 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.151 4.151 16 C 0.092 3.908 17 N -0.610 5.610 18 C 0.539 3.461 19 O -0.542 6.542 20 C -0.104 4.104 21 H 0.091 0.909 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.052 4.052 26 C -0.146 4.146 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.368 0.632 32 H 0.260 0.740 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -3.303 -23.318 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.091 0.909 4 C 0.067 3.933 5 H 0.090 0.910 6 N -0.386 5.386 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.578 5.578 11 Si 0.708 3.292 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.192 4.192 16 C -0.031 4.031 17 N -0.344 5.344 18 C 0.328 3.672 19 O -0.419 6.419 20 C -0.125 4.125 21 H 0.109 0.891 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.151 4.151 25 C -0.052 4.052 26 C -0.203 4.203 27 C -0.201 4.201 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.204 0.796 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.345 -2.815 -23.266 23.835 hybrid contribution -1.236 -0.052 0.004 1.237 sum 3.109 -2.867 -23.262 23.644 Atomic orbital electron populations 1.22085 0.95240 1.02097 1.02696 1.21825 0.94957 0.96028 0.84960 0.90924 1.21156 0.92977 0.92355 0.86779 0.91003 1.42972 1.03896 1.87979 1.03712 1.19069 0.95084 1.42212 0.81419 0.89046 1.24641 0.97325 1.01654 0.95107 1.69691 1.32650 1.56277 0.99186 0.86669 0.86957 0.78047 0.77507 1.20964 1.21531 1.20175 1.23578 1.01811 1.00835 0.93018 1.22570 0.94623 0.88754 0.97159 1.48618 1.50362 1.30393 1.04980 1.20027 0.81403 0.83686 0.82053 1.90642 1.36436 1.31727 1.83138 1.22276 0.99059 0.96907 0.94296 0.89119 1.22442 1.02262 0.97320 0.92634 1.22327 0.98741 0.96831 0.98091 1.22275 0.98993 0.99362 0.94516 1.21030 0.95252 0.93986 0.94970 1.22059 1.01509 0.95472 1.01224 1.22041 0.94240 1.02036 1.01795 0.91052 0.91465 0.92779 0.79604 0.92951 0.90126 0.90859 0.90901 0.91651 0.89839 0.91447 0.91483 0.91623 0.91457 0.91533 0.92100 0.92303 0.92349 0.91194 0.92913 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.93 37.16 0.29 -2.60 16 2 C 0.13 2.13 3.51 -66.95 -0.23 1.90 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.18 3.28 3.46 -66.09 -0.23 3.06 16 5 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 6 N -0.74 -16.91 4.79 -51.65 -0.25 -17.16 16 7 C -0.25 -6.76 10.45 -15.06 -0.16 -6.92 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 11 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.47 6.44 56.52 0.36 -6.11 16 15 C -0.15 -2.35 6.81 -24.32 -0.17 -2.51 16 16 C 0.09 1.14 6.20 -2.27 -0.01 1.13 16 17 N -0.61 -8.87 3.08 -162.71 -0.50 -9.37 16 18 C 0.54 7.77 5.07 -10.99 -0.06 7.72 16 19 O -0.54 -9.39 13.19 5.56 0.07 -9.32 16 20 C -0.10 -1.13 2.18 -90.12 -0.20 -1.33 16 21 H 0.09 0.88 6.72 -51.93 -0.35 0.53 16 22 C -0.11 -1.09 6.25 -24.74 -0.15 -1.24 16 23 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 24 C -0.11 -0.94 6.11 -25.62 -0.16 -1.10 16 25 C -0.05 -0.51 0.86 -153.39 -0.13 -0.64 16 26 C -0.15 -1.28 7.58 37.16 0.28 -1.00 16 27 C -0.14 -1.69 6.98 37.16 0.26 -1.43 16 28 H 0.07 1.36 6.64 -51.93 -0.34 1.01 16 29 H 0.07 1.20 6.64 -51.93 -0.34 0.86 16 30 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 31 H 0.37 8.36 2.85 -40.82 -0.12 8.25 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.77 5.10 -51.93 -0.26 0.51 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.99 7.33 -51.93 -0.38 0.61 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 42 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 43 H 0.06 0.60 6.41 -51.93 -0.33 0.27 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 46 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.76 7.26 -51.93 -0.38 0.39 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -30.88 354.43 -8.54 -39.42 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.34 Total: 7.84 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.93 Total: -5.95 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.03 Total: -54.44 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.88 -8.54 -39.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074809264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.376 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds