Wall clock time and date at job start Fri Apr 10 2020 20:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.99918 * 2 1 4 4 C 1.54323 * 109.88264 * 121.09118 * 2 1 3 5 5 H 1.09001 * 110.72228 * 215.58593 * 4 2 1 6 6 N 1.46499 * 110.72352 * 338.68916 * 4 2 1 7 7 C 1.36939 * 120.00027 * 202.56135 * 6 4 2 8 8 H 1.08004 * 119.99968 * 359.97438 * 7 6 4 9 9 C 1.38807 * 119.99986 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00161 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99933 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47506 * 89.99571 * 11 9 7 13 13 H 1.48506 * 109.47084 * 209.99456 * 11 9 7 14 14 H 1.48500 * 109.47089 * 329.99510 * 11 9 7 15 15 C 1.55160 * 103.10172 * 97.14133 * 4 2 1 16 16 C 1.55391 * 101.36538 * 35.49065 * 15 4 2 17 17 N 1.47025 * 109.88277 * 238.90184 * 2 1 3 18 18 C 1.34777 * 125.64724 * 59.55837 * 17 2 1 19 19 O 1.21277 * 119.99840 * 355.43778 * 18 17 2 20 20 C 1.50700 * 119.99951 * 175.43793 * 18 17 2 21 21 H 1.09003 * 110.43293 * 337.84129 * 20 18 17 22 22 C 1.54880 * 110.48714 * 215.30177 * 20 18 17 23 23 C 1.54893 * 102.74909 * 203.37892 * 22 20 18 24 24 C 1.54262 * 104.19444 * 37.94178 * 23 22 20 25 25 C 1.53872 * 106.60070 * 336.38928 * 24 23 22 26 26 C 1.52997 * 110.03642 * 240.71587 * 25 24 23 27 27 C 1.53005 * 110.03376 * 119.28356 * 25 24 23 28 28 H 1.09000 * 109.47391 * 298.90563 * 1 2 3 29 29 H 1.08994 * 109.47280 * 58.90980 * 1 2 3 30 30 H 1.09004 * 109.46770 * 178.90834 * 1 2 3 31 31 H 0.96998 * 120.00034 * 22.55291 * 6 4 2 32 32 H 0.97004 * 120.00023 * 180.02562 * 10 9 7 33 33 H 1.08996 * 111.00951 * 153.66682 * 15 4 2 34 34 H 1.09006 * 111.00007 * 277.52012 * 15 4 2 35 35 H 1.09003 * 110.33908 * 204.17088 * 16 15 4 36 36 H 1.09002 * 110.44154 * 81.92301 * 16 15 4 37 37 H 1.09001 * 110.75826 * 321.69091 * 22 20 18 38 38 H 1.09000 * 110.75946 * 84.87924 * 22 20 18 39 39 H 1.09001 * 110.48720 * 156.61688 * 23 22 20 40 40 H 1.08994 * 110.48571 * 279.13214 * 23 22 20 41 41 H 1.09004 * 110.03475 * 95.67197 * 24 23 22 42 42 H 1.08998 * 110.03560 * 217.10228 * 24 23 22 43 43 H 1.08996 * 109.47663 * 182.33963 * 26 25 24 44 44 H 1.09003 * 109.47248 * 302.34139 * 26 25 24 45 45 H 1.09002 * 109.46754 * 62.34098 * 26 25 24 46 46 H 1.09002 * 109.46939 * 297.83845 * 27 25 24 47 47 H 1.08995 * 109.46941 * 57.83799 * 27 25 24 48 48 H 1.09003 * 109.46898 * 177.84057 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.9657 -0.2831 1.6183 6 7 1.0307 -0.7989 2.2892 7 6 1.3954 -0.9846 3.5959 8 1 2.4381 -1.0950 3.8551 9 6 0.4251 -1.0310 4.5875 10 7 0.7756 -1.2100 5.8434 11 14 -1.3783 -0.8408 4.1391 12 1 -1.9608 -2.1764 3.8529 13 1 -2.1068 -0.2155 5.2721 14 1 -1.5009 0.0208 2.9358 15 6 2.3511 -2.1713 0.6969 16 6 2.8569 -1.8497 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3846 -2.4657 19 8 1.0129 0.5242 -2.7181 20 6 2.4379 -1.1453 -3.5852 21 1 3.3461 -1.6318 -3.2294 22 6 2.7579 -0.1989 -4.7687 23 6 2.8350 -1.1706 -5.9724 24 6 1.7175 -2.1988 -5.7006 25 6 1.4650 -2.1828 -4.1828 26 6 1.7444 -3.5654 -3.5903 27 6 0.0194 -1.7715 -3.8963 28 1 -0.3634 0.4967 0.8996 29 1 -0.3633 0.5306 -0.8800 30 1 -0.3633 -1.0275 -0.0196 31 1 0.0943 -0.7000 2.0564 32 1 0.0975 -1.2428 6.5363 33 1 3.1248 -2.6629 1.2867 34 1 1.4437 -2.7745 0.6653 35 1 2.7088 -2.7081 -1.3921 36 1 3.9094 -1.5672 -0.7147 37 1 1.9578 0.5278 -4.9095 38 1 3.7121 0.3047 -4.6135 39 1 2.6455 -0.6388 -6.9048 40 1 3.8078 -1.6612 -6.0049 41 1 0.8101 -1.9136 -6.2330 42 1 2.0390 -3.1916 -6.0152 43 1 1.5231 -3.5550 -2.5231 44 1 1.1158 -4.3063 -4.0845 45 1 2.7934 -3.8202 -3.7413 46 1 -0.1508 -0.7604 -4.2661 47 1 -0.6605 -2.4608 -4.3969 48 1 -0.1603 -1.8003 -2.8215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074809264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:56 Heat of formation + Delta-G solvation = -49.046019 kcal Electronic energy + Delta-G solvation = -25679.620997 eV Core-core repulsion = 22347.433947 eV Total energy + Delta-G solvation = -3332.187051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84615 -39.91286 -38.20031 -36.04458 -33.70994 -33.13590 -32.19608 -31.41412 -29.73746 -28.26643 -26.95030 -25.82814 -25.00634 -23.88903 -22.13886 -21.05949 -20.46039 -19.87798 -19.06841 -18.17968 -17.18316 -16.69397 -16.55500 -16.12832 -15.91207 -15.47176 -15.20165 -14.83586 -14.58096 -14.36863 -14.22970 -14.01565 -13.83978 -13.62115 -13.37953 -13.27908 -13.24248 -12.90674 -12.77215 -12.66954 -12.57176 -12.33338 -12.24248 -11.96211 -11.93558 -11.75494 -11.68214 -11.57119 -11.49529 -11.37607 -11.29588 -10.98277 -10.57633 -9.63187 -9.33370 -8.04086 -5.37284 1.34937 1.35721 1.42715 1.65405 1.97706 2.44985 3.25083 3.38433 3.53371 3.56549 3.62777 3.76349 3.82337 4.08808 4.16279 4.28337 4.32101 4.32562 4.38616 4.40382 4.45377 4.47087 4.53091 4.57758 4.69276 4.72907 4.76429 4.80085 4.92161 4.99588 5.01183 5.02125 5.09746 5.13856 5.17047 5.21863 5.23417 5.30997 5.34936 5.40704 5.43667 5.49895 5.54727 5.76545 6.20161 6.62086 7.04980 7.22903 7.80573 7.98806 9.17091 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.003982 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.156068 B = 7030.372522 C = 7147.100675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 H 0.066 0.934 4 C 0.169 3.831 5 H 0.068 0.932 6 N -0.746 5.746 7 C -0.226 4.226 8 H 0.066 0.934 9 C -0.056 4.056 10 N -0.980 5.980 11 Si 0.938 3.062 12 H -0.278 1.278 13 H -0.295 1.295 14 H -0.258 1.258 15 C -0.144 4.144 16 C 0.100 3.900 17 N -0.611 5.611 18 C 0.536 3.464 19 O -0.577 6.577 20 C -0.100 4.100 21 H 0.113 0.887 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.051 4.051 26 C -0.144 4.144 27 C -0.139 4.139 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.369 0.631 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -4.699 -26.334 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.084 0.916 4 C 0.060 3.940 5 H 0.086 0.914 6 N -0.391 5.391 7 C -0.357 4.357 8 H 0.084 0.916 9 C -0.248 4.248 10 N -0.630 5.630 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.221 1.221 14 H -0.183 1.183 15 C -0.184 4.184 16 C -0.022 4.022 17 N -0.344 5.344 18 C 0.326 3.674 19 O -0.456 6.456 20 C -0.121 4.121 21 H 0.131 0.869 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.051 4.051 26 C -0.201 4.201 27 C -0.196 4.196 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.205 0.795 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.306 -4.221 -26.354 27.213 hybrid contribution -1.462 0.426 0.894 1.766 sum 3.844 -3.795 -25.460 26.027 Atomic orbital electron populations 1.21964 0.95936 1.01641 1.01637 1.21565 0.94307 0.95846 0.85548 0.91612 1.21358 0.91728 0.94642 0.86311 0.91370 1.42974 1.04948 1.88145 1.03080 1.19054 0.93863 1.39574 0.83246 0.91563 1.25337 1.01604 1.02843 0.95041 1.69848 1.33859 1.58939 1.00360 0.85683 0.81780 0.78373 0.77553 1.20382 1.22141 1.18271 1.23408 1.01720 0.98252 0.95056 1.22672 0.95292 0.88931 0.95303 1.48673 1.50572 1.30695 1.04466 1.20754 0.80829 0.83363 0.82409 1.90631 1.38011 1.33413 1.83584 1.22381 0.99684 0.97037 0.93039 0.86933 1.22449 1.01665 0.97309 0.93439 1.22319 0.99543 0.96160 0.97213 1.22271 0.99133 1.00589 0.92882 1.21070 0.93366 0.94297 0.96377 1.22058 1.03051 0.94662 1.00324 1.21979 0.96419 1.01228 1.00012 0.92514 0.91920 0.92903 0.79491 0.93336 0.89582 0.91901 0.88216 0.89164 0.92385 0.90685 0.90751 0.89734 0.91852 0.89554 0.93360 0.91435 0.90278 0.93313 0.91641 0.95135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 7.93 71.98 0.57 -4.87 16 2 C 0.13 4.40 3.51 45.34 0.16 4.55 16 3 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 4 C 0.17 6.11 3.46 46.18 0.16 6.27 16 5 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 6 N -0.75 -33.95 4.79 -317.32 -1.52 -35.47 16 7 C -0.23 -12.50 10.45 84.03 0.88 -11.62 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 10 N -0.98 -61.94 13.97 21.65 0.30 -61.63 16 11 Si 0.94 45.53 27.74 68.60 1.90 47.43 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 14 H -0.26 -11.57 6.44 99.48 0.64 -10.93 16 15 C -0.14 -4.21 6.81 32.16 0.22 -3.99 16 16 C 0.10 2.18 6.20 87.03 0.54 2.72 16 17 N -0.61 -16.75 3.08 -787.10 -2.43 -19.17 16 18 C 0.54 14.73 5.07 87.66 0.44 15.18 16 19 O -0.58 -20.03 13.19 -3.02 -0.04 -20.07 16 20 C -0.10 -1.91 2.18 -10.47 -0.02 -1.93 16 21 H 0.11 1.67 6.72 -2.39 -0.02 1.66 16 22 C -0.11 -1.97 6.25 31.88 0.20 -1.77 16 23 C -0.11 -1.40 6.83 31.67 0.22 -1.18 16 24 C -0.11 -1.45 6.11 31.32 0.19 -1.25 16 25 C -0.05 -0.86 0.86 -51.46 -0.04 -0.90 16 26 C -0.14 -1.99 7.58 71.98 0.55 -1.44 16 27 C -0.14 -3.14 6.98 71.98 0.50 -2.63 16 28 H 0.06 2.15 6.64 -2.39 -0.02 2.13 16 29 H 0.06 2.27 6.64 -2.39 -0.02 2.25 16 30 H 0.05 1.85 8.06 -2.38 -0.02 1.83 16 31 H 0.37 16.58 2.85 -92.71 -0.26 16.31 16 32 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.10 1.71 5.10 -2.39 -0.01 1.70 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.34 7.33 -2.39 -0.02 1.32 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 42 H 0.09 0.83 7.67 -2.39 -0.02 0.81 16 43 H 0.05 0.79 6.41 -2.39 -0.02 0.78 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 46 H 0.05 1.29 7.12 -2.39 -0.02 1.27 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.03 0.82 7.26 -2.39 -0.02 0.80 16 Total: -1.00 -68.85 354.43 3.85 -65.00 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.60 Total: 29.61 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.03 Total: -5.70 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -3.64 Total: -116.27 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -68.85 3.85 -65.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074809264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.954 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds