Wall clock time and date at job start Fri Apr 10 2020 20:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87161 * 2 1 4 4 C 1.54323 * 109.87872 * 121.01509 * 2 1 3 5 5 H 1.09001 * 110.72129 * 215.74241 * 4 2 1 6 6 N 1.46495 * 110.72286 * 339.01955 * 4 2 1 7 7 C 1.36937 * 120.00033 * 204.99823 * 6 4 2 8 8 H 1.08003 * 120.00365 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00348 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99567 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00336 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46971 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46974 * 120.00267 * 11 9 7 14 14 H 1.48496 * 109.46813 * 240.00273 * 11 9 7 15 15 C 1.55408 * 102.82586 * 97.47376 * 4 2 1 16 16 C 1.54901 * 101.66667 * 35.33682 * 15 4 2 17 17 N 1.47016 * 109.88314 * 238.98473 * 2 1 3 18 18 C 1.34775 * 125.65091 * 59.40670 * 17 2 1 19 19 O 1.21278 * 119.99965 * 0.02562 * 18 17 2 20 20 C 1.50704 * 120.00031 * 180.02562 * 18 17 2 21 21 H 1.08996 * 110.01913 * 27.91178 * 20 18 17 22 22 C 1.54268 * 110.03185 * 149.35613 * 20 18 17 23 23 C 1.54889 * 104.19684 * 95.67052 * 22 20 18 24 24 C 1.54891 * 102.74776 * 37.94276 * 23 22 20 25 25 C 1.53882 * 110.02942 * 266.51837 * 20 18 17 26 26 C 1.53000 * 110.03062 * 0.02562 * 25 20 18 27 27 C 1.53000 * 110.02982 * 121.38390 * 25 20 18 28 28 H 1.08999 * 109.47104 * 179.29415 * 1 2 3 29 29 H 1.08997 * 109.47130 * 299.29701 * 1 2 3 30 30 H 1.09003 * 109.46680 * 59.29677 * 1 2 3 31 31 H 0.97000 * 120.00457 * 24.99206 * 6 4 2 32 32 H 0.97005 * 120.00175 * 179.97438 * 10 9 7 33 33 H 1.08997 * 110.89156 * 277.26267 * 15 4 2 34 34 H 1.09004 * 111.06807 * 153.48644 * 15 4 2 35 35 H 1.09008 * 110.36870 * 204.23928 * 16 15 4 36 36 H 1.09001 * 110.46143 * 81.95921 * 16 15 4 37 37 H 1.09000 * 110.48135 * 214.35323 * 22 20 18 38 38 H 1.09004 * 110.48326 * 336.98973 * 22 20 18 39 39 H 1.08995 * 110.75523 * 279.62863 * 23 22 20 40 40 H 1.09003 * 110.91199 * 156.32988 * 23 22 20 41 41 H 1.08997 * 110.48482 * 203.37775 * 24 23 22 42 42 H 1.09005 * 110.59698 * 80.78896 * 24 23 22 43 43 H 1.08996 * 109.47416 * 58.89886 * 26 25 20 44 44 H 1.08997 * 109.46682 * 178.89657 * 26 25 20 45 45 H 1.08994 * 109.47472 * 298.89340 * 26 25 20 46 46 H 1.08997 * 109.46983 * 59.99847 * 27 25 20 47 47 H 1.09001 * 109.46985 * 179.97438 * 27 25 20 48 48 H 1.09002 * 109.47266 * 299.99880 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9641 -0.2793 1.6203 6 7 1.0279 -0.8027 2.2872 7 6 1.3925 -0.9375 3.6002 8 1 2.4371 -1.0037 3.8666 9 6 0.4196 -0.9889 4.5890 10 7 -0.8534 -0.9087 4.2644 11 14 0.9170 -1.1721 6.3802 12 1 2.3972 -1.2393 6.4785 13 1 0.4225 -0.0044 7.1531 14 1 0.3266 -2.4175 6.9330 15 6 2.3574 -2.1681 0.6903 16 6 2.8599 -1.8466 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.7731 -0.3827 -2.4662 19 8 1.0746 0.5764 -2.7172 20 6 2.3537 -1.2060 -3.5870 21 1 2.5098 -2.2321 -3.2542 22 6 1.4072 -1.1826 -4.8050 23 6 1.9720 -0.0544 -5.7034 24 6 3.5032 -0.2214 -5.5397 25 6 3.6864 -0.5948 -4.0542 26 6 4.0049 0.6569 -3.2341 27 6 4.8133 -1.6188 -3.9053 28 1 -0.3633 -1.0276 -0.0127 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8837 31 1 0.0897 -0.7434 2.0480 32 1 -1.5334 -0.9450 4.9553 33 1 1.4521 -2.7742 0.6591 34 1 3.1342 -2.6596 1.2761 35 1 2.7128 -2.7048 -1.3951 36 1 3.9118 -1.5618 -0.7184 37 1 1.4360 -2.1381 -5.3288 38 1 0.3894 -0.9483 -4.4927 39 1 1.6495 0.9230 -5.3447 40 1 1.6764 -0.1998 -6.7425 41 1 4.0150 0.7144 -5.7638 42 1 3.8726 -1.0207 -6.1823 43 1 4.0636 0.3941 -2.1779 44 1 4.9594 1.0709 -3.5591 45 1 3.2189 1.3975 -3.3812 46 1 4.5894 -2.4963 -4.5118 47 1 5.7522 -1.1769 -4.2389 48 1 4.9012 -1.9129 -2.8593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074809265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:59 Heat of formation + Delta-G solvation = -34.669348 kcal Electronic energy + Delta-G solvation = -25567.102275 eV Core-core repulsion = 22235.538643 eV Total energy + Delta-G solvation = -3331.563631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77638 -38.63690 -36.83154 -34.18384 -32.35314 -31.69594 -30.67496 -29.67575 -28.38778 -27.44511 -25.18602 -24.88490 -23.52123 -22.60669 -21.22501 -19.93737 -18.89756 -18.01327 -17.51719 -17.03728 -15.90358 -15.30146 -15.16968 -14.85430 -14.53215 -13.99052 -13.77712 -13.54681 -13.35468 -13.20284 -13.10132 -12.72241 -12.44704 -12.21722 -12.02692 -11.80002 -11.75541 -11.55790 -11.34740 -11.19633 -11.10993 -10.98188 -10.95155 -10.82533 -10.72006 -10.63687 -10.56356 -10.43020 -10.17406 -9.96764 -9.71344 -9.27920 -8.95817 -8.30649 -7.03126 -5.82658 -3.12370 2.88882 3.23829 3.40200 3.46054 3.48233 4.31195 4.43184 4.48903 4.54707 4.89252 5.04754 5.10590 5.14515 5.22738 5.23146 5.29277 5.34052 5.46320 5.50563 5.56344 5.57867 5.60771 5.65548 5.66877 5.75394 5.81727 5.84577 5.85681 5.95998 6.00444 6.09243 6.09965 6.13118 6.18959 6.25083 6.26420 6.34270 6.35985 6.56818 6.59846 6.75015 6.87728 7.00670 7.65797 7.87080 8.35678 8.48328 9.47547 10.02969 10.37904 11.39841 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.003634 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.596647 B = 7702.218388 C = 8094.529142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.068 0.932 4 C 0.174 3.826 5 H 0.064 0.936 6 N -0.716 5.716 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.099 3.901 17 N -0.609 5.609 18 C 0.541 3.459 19 O -0.543 6.543 20 C -0.106 4.106 21 H 0.089 0.911 22 C -0.106 4.106 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.051 4.051 26 C -0.152 4.152 27 C -0.141 4.141 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.391 0.609 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -2.136 -19.079 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.086 0.914 4 C 0.062 3.938 5 H 0.082 0.918 6 N -0.359 5.359 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.025 4.025 17 N -0.343 5.343 18 C 0.330 3.670 19 O -0.421 6.421 20 C -0.127 4.127 21 H 0.107 0.893 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.052 4.052 26 C -0.210 4.210 27 C -0.198 4.198 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.933 -1.599 -19.080 21.570 hybrid contribution -0.015 -0.300 1.077 1.119 sum 9.919 -1.899 -18.002 20.641 Atomic orbital electron populations 1.21990 0.94700 1.02217 1.02642 1.21837 0.95330 0.95732 0.84764 0.91371 1.21206 0.93131 0.91992 0.87450 0.91763 1.42661 1.04501 1.86954 1.01782 1.19303 0.92589 1.42558 0.83110 0.91012 1.24757 0.95222 1.02622 0.98089 1.69671 0.98870 1.57045 1.32253 0.86110 0.77537 0.77277 0.85189 1.20511 1.21828 1.21849 1.23599 1.01588 1.01391 0.93061 1.22371 0.94433 0.88609 0.97045 1.48655 1.50064 1.30505 1.05068 1.19977 0.79989 0.84939 0.82094 1.90651 1.39136 1.29089 1.83236 1.22107 0.96157 0.99714 0.94730 0.89297 1.22228 0.99069 0.98782 0.94306 1.22467 0.94787 0.99683 0.98938 1.22486 0.96737 1.01194 0.94700 1.21026 0.92948 0.95621 0.95586 1.22104 1.01771 0.97213 0.99862 1.21965 0.97634 0.98200 1.02001 0.92743 0.90309 0.92209 0.77117 0.93423 0.90790 0.90697 0.91529 0.91843 0.91331 0.90738 0.90694 0.91812 0.91570 0.91535 0.92142 0.92625 0.91459 0.92460 0.92404 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 7.93 37.16 0.29 -2.73 16 2 C 0.13 2.28 3.47 -66.95 -0.23 2.04 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.17 3.34 3.50 -65.96 -0.23 3.11 16 5 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 6 N -0.72 -17.31 4.94 -51.52 -0.25 -17.57 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 11 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C -0.16 -2.51 6.78 -24.45 -0.17 -2.68 16 16 C 0.10 1.29 6.67 -2.53 -0.02 1.27 16 17 N -0.61 -9.31 2.60 -163.02 -0.42 -9.73 16 18 C 0.54 8.21 4.42 -10.98 -0.05 8.16 16 19 O -0.54 -9.94 14.11 5.56 0.08 -9.86 16 20 C -0.11 -1.23 2.56 -90.65 -0.23 -1.46 16 21 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16 22 C -0.11 -1.16 6.04 -25.07 -0.15 -1.31 16 23 C -0.12 -1.23 6.85 -24.74 -0.17 -1.40 16 24 C -0.11 -1.03 5.90 -25.07 -0.15 -1.18 16 25 C -0.05 -0.51 0.94 -153.39 -0.14 -0.66 16 26 C -0.15 -1.76 7.19 37.16 0.27 -1.49 16 27 C -0.14 -1.15 8.16 37.16 0.30 -0.85 16 28 H 0.05 1.07 8.02 -51.93 -0.42 0.65 16 29 H 0.08 1.65 6.79 -51.93 -0.35 1.30 16 30 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 31 H 0.39 10.04 5.06 -40.82 -0.21 9.83 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.75 6.75 -51.92 -0.35 0.39 16 36 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.96 7.47 -51.93 -0.39 0.57 16 39 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 42 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 43 H 0.06 0.76 7.08 -51.93 -0.37 0.39 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.92 6.99 -51.93 -0.36 0.56 16 46 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -30.09 361.68 -8.90 -38.99 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.53 Total: 8.94 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.92 Total: -6.26 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.05 Total: -54.14 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.09 -8.90 -38.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074809265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.319 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds