Wall clock time and date at job start Fri Apr 10 2020 20:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87161 * 2 1 4 4 C 1.54323 * 109.87872 * 121.01509 * 2 1 3 5 5 H 1.09001 * 110.72129 * 215.74241 * 4 2 1 6 6 N 1.46495 * 110.72286 * 339.01955 * 4 2 1 7 7 C 1.36937 * 120.00033 * 204.99823 * 6 4 2 8 8 H 1.08003 * 120.00365 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00348 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99567 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00336 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46971 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46974 * 120.00267 * 11 9 7 14 14 H 1.48496 * 109.46813 * 240.00273 * 11 9 7 15 15 C 1.55408 * 102.82586 * 97.47376 * 4 2 1 16 16 C 1.54901 * 101.66667 * 35.33682 * 15 4 2 17 17 N 1.47016 * 109.88314 * 238.98473 * 2 1 3 18 18 C 1.34775 * 125.65091 * 59.40670 * 17 2 1 19 19 O 1.21278 * 119.99965 * 0.02562 * 18 17 2 20 20 C 1.50704 * 120.00031 * 180.02562 * 18 17 2 21 21 H 1.08996 * 110.01913 * 27.91178 * 20 18 17 22 22 C 1.54268 * 110.03185 * 149.35613 * 20 18 17 23 23 C 1.54889 * 104.19684 * 95.67052 * 22 20 18 24 24 C 1.54891 * 102.74776 * 37.94276 * 23 22 20 25 25 C 1.53882 * 110.02942 * 266.51837 * 20 18 17 26 26 C 1.53000 * 110.03062 * 0.02562 * 25 20 18 27 27 C 1.53000 * 110.02982 * 121.38390 * 25 20 18 28 28 H 1.08999 * 109.47104 * 179.29415 * 1 2 3 29 29 H 1.08997 * 109.47130 * 299.29701 * 1 2 3 30 30 H 1.09003 * 109.46680 * 59.29677 * 1 2 3 31 31 H 0.97000 * 120.00457 * 24.99206 * 6 4 2 32 32 H 0.97005 * 120.00175 * 179.97438 * 10 9 7 33 33 H 1.08997 * 110.89156 * 277.26267 * 15 4 2 34 34 H 1.09004 * 111.06807 * 153.48644 * 15 4 2 35 35 H 1.09008 * 110.36870 * 204.23928 * 16 15 4 36 36 H 1.09001 * 110.46143 * 81.95921 * 16 15 4 37 37 H 1.09000 * 110.48135 * 214.35323 * 22 20 18 38 38 H 1.09004 * 110.48326 * 336.98973 * 22 20 18 39 39 H 1.08995 * 110.75523 * 279.62863 * 23 22 20 40 40 H 1.09003 * 110.91199 * 156.32988 * 23 22 20 41 41 H 1.08997 * 110.48482 * 203.37775 * 24 23 22 42 42 H 1.09005 * 110.59698 * 80.78896 * 24 23 22 43 43 H 1.08996 * 109.47416 * 58.89886 * 26 25 20 44 44 H 1.08997 * 109.46682 * 178.89657 * 26 25 20 45 45 H 1.08994 * 109.47472 * 298.89340 * 26 25 20 46 46 H 1.08997 * 109.46983 * 59.99847 * 27 25 20 47 47 H 1.09001 * 109.46985 * 179.97438 * 27 25 20 48 48 H 1.09002 * 109.47266 * 299.99880 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9641 -0.2793 1.6203 6 7 1.0279 -0.8027 2.2872 7 6 1.3925 -0.9375 3.6002 8 1 2.4371 -1.0037 3.8666 9 6 0.4196 -0.9889 4.5890 10 7 -0.8534 -0.9087 4.2644 11 14 0.9170 -1.1721 6.3802 12 1 2.3972 -1.2393 6.4785 13 1 0.4225 -0.0044 7.1531 14 1 0.3266 -2.4175 6.9330 15 6 2.3574 -2.1681 0.6903 16 6 2.8599 -1.8466 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.7731 -0.3827 -2.4662 19 8 1.0746 0.5764 -2.7172 20 6 2.3537 -1.2060 -3.5870 21 1 2.5098 -2.2321 -3.2542 22 6 1.4072 -1.1826 -4.8050 23 6 1.9720 -0.0544 -5.7034 24 6 3.5032 -0.2214 -5.5397 25 6 3.6864 -0.5948 -4.0542 26 6 4.0049 0.6569 -3.2341 27 6 4.8133 -1.6188 -3.9053 28 1 -0.3633 -1.0276 -0.0127 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8837 31 1 0.0897 -0.7434 2.0480 32 1 -1.5334 -0.9450 4.9553 33 1 1.4521 -2.7742 0.6591 34 1 3.1342 -2.6596 1.2761 35 1 2.7128 -2.7048 -1.3951 36 1 3.9118 -1.5618 -0.7184 37 1 1.4360 -2.1381 -5.3288 38 1 0.3894 -0.9483 -4.4927 39 1 1.6495 0.9230 -5.3447 40 1 1.6764 -0.1998 -6.7425 41 1 4.0150 0.7144 -5.7638 42 1 3.8726 -1.0207 -6.1823 43 1 4.0636 0.3941 -2.1779 44 1 4.9594 1.0709 -3.5591 45 1 3.2189 1.3975 -3.3812 46 1 4.5894 -2.4963 -4.5118 47 1 5.7522 -1.1769 -4.2389 48 1 4.9012 -1.9129 -2.8593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074809265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:59 Heat of formation + Delta-G solvation = -51.386667 kcal Electronic energy + Delta-G solvation = -25567.827192 eV Core-core repulsion = 22235.538643 eV Total energy + Delta-G solvation = -3332.288549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88874 -39.83649 -38.06847 -35.93113 -33.55275 -33.04339 -32.12039 -31.06640 -29.62528 -28.23355 -26.78281 -25.86306 -25.23569 -23.85710 -22.26318 -20.99917 -20.23771 -19.47865 -19.01786 -18.24154 -17.12252 -16.65503 -16.39901 -16.19054 -15.86695 -15.46506 -15.13491 -14.65836 -14.55324 -14.32390 -14.02180 -13.92111 -13.79679 -13.62746 -13.25921 -13.00688 -12.97028 -12.88745 -12.86873 -12.60324 -12.50969 -12.17685 -12.08382 -12.01752 -11.95655 -11.83319 -11.61339 -11.55258 -11.47309 -11.38645 -11.32392 -10.92953 -10.53345 -9.60026 -9.01814 -7.94219 -5.23406 1.49113 1.49857 1.59687 1.71036 2.00724 2.57606 3.35197 3.45017 3.54928 3.62323 3.77557 3.82710 3.93809 4.15909 4.17551 4.32649 4.34806 4.37095 4.39992 4.41924 4.46113 4.53487 4.62085 4.66259 4.76422 4.78800 4.80989 4.86629 4.93185 5.01194 5.03889 5.05083 5.13565 5.16190 5.19197 5.21221 5.25243 5.34702 5.39758 5.40117 5.47114 5.52258 5.54695 5.57251 6.27415 6.66006 7.26664 7.34612 8.08114 8.31803 9.29699 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.003634 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.596647 B = 7702.218388 C = 8094.529142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.057 0.943 4 C 0.167 3.833 5 H 0.068 0.932 6 N -0.732 5.732 7 C -0.239 4.239 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.298 1.298 14 H -0.295 1.295 15 C -0.145 4.145 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.537 3.463 19 O -0.582 6.582 20 C -0.102 4.102 21 H 0.110 0.890 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.108 4.108 25 C -0.049 4.049 26 C -0.149 4.149 27 C -0.138 4.138 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.380 0.620 32 H 0.250 0.750 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.285 -4.020 -20.670 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.075 0.925 4 C 0.056 3.944 5 H 0.086 0.914 6 N -0.374 5.374 7 C -0.370 4.370 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.225 1.225 14 H -0.222 1.222 15 C -0.186 4.186 16 C -0.016 4.016 17 N -0.343 5.343 18 C 0.328 3.672 19 O -0.462 6.462 20 C -0.123 4.123 21 H 0.128 0.872 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.146 4.146 25 C -0.049 4.049 26 C -0.207 4.207 27 C -0.195 4.195 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.216 0.784 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.023 -3.503 -20.706 24.711 hybrid contribution -0.948 0.359 1.492 1.804 sum 12.075 -3.143 -19.214 22.910 Atomic orbital electron populations 1.21795 0.96047 1.01146 1.01020 1.21539 0.94073 0.95563 0.85881 0.92457 1.21409 0.91930 0.94282 0.86738 0.91416 1.42834 1.05025 1.87280 1.02226 1.19716 0.92915 1.40166 0.84249 0.90017 1.25557 0.95278 1.03789 1.02123 1.69835 0.99898 1.59414 1.33061 0.85075 0.77989 0.76430 0.80260 1.18637 1.22541 1.22242 1.23400 1.01374 0.98581 0.95219 1.22511 0.95106 0.88740 0.95262 1.48697 1.50289 1.30871 1.04426 1.20763 0.79206 0.84723 0.82531 1.90638 1.40865 1.30983 1.83749 1.22220 0.96909 0.99912 0.93260 0.87238 1.22280 0.97421 1.00379 0.94430 1.22445 0.95985 0.97879 0.99660 1.22491 0.95523 1.02198 0.94342 1.21069 0.92758 0.95329 0.95772 1.22063 1.01507 0.97497 0.99583 1.21954 0.96920 0.98005 1.02596 0.93477 0.92735 0.92788 0.78447 0.94112 0.92636 0.89287 0.88455 0.89186 0.88476 0.93479 0.93749 0.90016 0.91428 0.89093 0.93278 0.91009 0.94563 0.90804 0.91423 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 7.93 71.98 0.57 -5.16 16 2 C 0.13 4.89 3.47 45.34 0.16 5.04 16 3 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.17 6.34 3.50 46.27 0.16 6.50 16 5 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 6 N -0.73 -36.01 4.94 -316.92 -1.57 -37.57 16 7 C -0.24 -12.83 9.96 84.03 0.84 -11.99 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 10 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 11 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 15 C -0.14 -4.42 6.78 32.07 0.22 -4.21 16 16 C 0.11 2.43 6.67 86.85 0.58 3.01 16 17 N -0.61 -18.00 2.60 -788.06 -2.05 -20.05 16 18 C 0.54 15.97 4.42 87.66 0.39 16.36 16 19 O -0.58 -22.01 14.11 -3.02 -0.04 -22.05 16 20 C -0.10 -2.11 2.56 -10.81 -0.03 -2.14 16 21 H 0.11 1.82 6.01 -2.39 -0.01 1.80 16 22 C -0.11 -2.15 6.04 31.67 0.19 -1.96 16 23 C -0.12 -2.30 6.85 31.89 0.22 -2.08 16 24 C -0.11 -1.62 5.90 31.67 0.19 -1.43 16 25 C -0.05 -0.83 0.94 -51.46 -0.05 -0.88 16 26 C -0.15 -3.22 7.19 71.98 0.52 -2.71 16 27 C -0.14 -1.60 8.16 71.98 0.59 -1.01 16 28 H 0.05 1.93 8.02 -2.39 -0.02 1.91 16 29 H 0.05 2.44 6.79 -2.39 -0.02 2.43 16 30 H 0.05 2.20 6.74 -2.39 -0.02 2.19 16 31 H 0.38 20.29 5.06 -92.71 -0.47 19.82 16 32 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.10 1.72 6.75 -2.38 -0.02 1.70 16 36 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.20 7.47 -2.38 -0.02 1.18 16 39 H 0.04 1.10 8.11 -2.39 -0.02 1.08 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.01 7.84 -2.39 -0.02 0.99 16 42 H 0.09 0.97 7.84 -2.38 -0.02 0.95 16 43 H 0.05 1.15 7.08 -2.39 -0.02 1.13 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.04 1.00 6.99 -2.39 -0.02 0.98 16 46 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 Total: -1.00 -67.99 361.68 4.11 -63.88 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.45 Total: 33.74 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.00 Total: -6.45 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -3.34 Total: -116.60 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.04 Total: -22.05 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.99 4.11 -63.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074809265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.498 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds