Wall clock time and date at job start Fri Apr 10 2020 20:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47352 * 2 1 4 4 C 1.53001 * 109.47644 * 120.00393 * 2 1 3 5 5 C 1.53004 * 109.46816 * 64.99645 * 4 2 1 6 6 H 1.09000 * 115.56280 * 29.31728 * 5 4 2 7 7 C 1.52997 * 117.49863 * 243.62263 * 5 4 2 8 8 C 1.53001 * 117.49596 * 175.00004 * 5 4 2 9 9 H 1.09002 * 117.51863 * 0.02562 * 8 5 4 10 10 C 1.50693 * 117.49755 * 214.97996 * 8 5 4 11 11 O 1.21283 * 120.00532 * 359.97438 * 10 8 5 12 12 N 1.34783 * 119.99982 * 179.97438 * 10 8 5 13 13 C 1.47428 * 125.64600 * 0.04158 * 12 10 8 14 14 C 1.55121 * 104.94041 * 203.96815 * 13 12 10 15 15 C 1.55153 * 101.48662 * 323.22250 * 14 13 12 16 16 H 1.09003 * 110.71747 * 276.82953 * 15 14 13 17 17 N 1.46506 * 110.71931 * 153.73723 * 15 14 13 18 18 C 1.36934 * 120.00324 * 88.83938 * 17 15 14 19 19 H 1.07997 * 119.99709 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00305 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99748 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46829 * 60.00824 * 22 20 18 24 24 H 1.48509 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47179 * 300.00361 * 22 20 18 26 26 C 1.47018 * 125.64997 * 180.02562 * 12 10 8 27 27 H 1.08995 * 109.88112 * 298.39166 * 26 12 10 28 28 C 1.52999 * 110.01041 * 59.48611 * 26 12 10 29 29 H 1.09005 * 109.46670 * 299.99420 * 1 2 3 30 30 H 1.08994 * 109.47765 * 59.99459 * 1 2 3 31 31 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46670 * 240.00580 * 2 1 3 33 33 H 1.08997 * 109.47390 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47162 * 300.00590 * 3 2 1 35 35 H 1.08997 * 109.46680 * 60.00261 * 3 2 1 36 36 H 1.08997 * 109.46847 * 304.99736 * 4 2 1 37 37 H 1.08996 * 109.47265 * 184.99898 * 4 2 1 38 38 H 1.09001 * 117.49877 * 145.02599 * 7 5 4 39 39 H 1.09004 * 117.51830 * 359.97438 * 7 5 4 40 40 H 1.09003 * 110.36480 * 322.93342 * 13 12 10 41 41 H 1.08997 * 110.36747 * 85.14624 * 13 12 10 42 42 H 1.09001 * 111.15992 * 205.12732 * 14 13 12 43 43 H 1.09003 * 110.93564 * 81.21521 * 14 13 12 44 44 H 0.97002 * 119.99472 * 268.83940 * 17 15 14 45 45 H 0.97000 * 119.99823 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.47066 * 177.88684 * 28 26 12 47 47 H 1.09004 * 109.47178 * 297.88293 * 28 26 12 48 48 H 1.08995 * 109.47192 * 57.88968 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 1 1.5388 -2.6155 0.1866 7 6 0.6791 -2.7110 2.2652 8 6 2.1540 -3.1171 2.2934 9 1 2.7833 -2.6734 3.0649 10 6 2.4923 -4.5360 1.9149 11 8 2.3494 -4.9087 0.7696 12 7 2.9539 -5.3909 2.8490 13 6 3.1735 -5.0724 4.2716 14 6 4.2347 -6.0970 4.7517 15 6 3.8170 -7.3665 3.9635 16 1 3.0138 -7.8934 4.4787 17 7 4.9668 -8.2511 3.7588 18 6 5.2744 -9.2021 4.6948 19 1 4.6692 -9.3002 5.5839 20 6 6.3634 -10.0405 4.5006 21 7 7.1008 -9.9212 3.4168 22 14 6.7826 -11.3382 5.7773 23 1 5.6361 -12.2693 5.9314 24 1 7.9811 -12.0967 5.3371 25 1 7.0641 -10.6799 7.0782 26 6 3.3213 -6.7956 2.6182 27 1 2.4506 -7.3552 2.2766 28 6 4.4366 -6.8803 1.5742 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6055 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2950 38 1 -0.0464 -3.4702 1.9729 39 1 0.3386 -2.0003 3.0183 40 1 3.5510 -4.0555 4.3788 41 1 2.2483 -5.1942 4.8349 42 1 4.1631 -6.2632 5.8265 43 1 5.2388 -5.7771 4.4734 44 1 5.5102 -8.1631 2.9601 45 1 7.8616 -10.5073 3.2809 46 1 4.7279 -7.9217 1.4374 47 1 4.0793 -6.4756 0.6272 48 1 5.2970 -6.3040 1.9141 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074897921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:06 Heat of formation + Delta-G solvation = -12.505023 kcal Electronic energy + Delta-G solvation = -24076.574545 eV Core-core repulsion = 20745.972031 eV Total energy + Delta-G solvation = -3330.602514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21355 -38.45744 -37.03619 -35.05842 -34.15332 -31.63833 -30.67416 -29.03413 -27.73450 -27.40098 -25.21095 -24.56524 -23.16619 -22.14202 -21.25315 -20.25749 -19.33478 -18.52897 -17.54349 -16.97561 -15.69569 -15.59477 -15.35463 -14.80718 -14.39977 -14.33068 -14.03624 -13.65215 -13.51972 -13.25555 -13.03216 -12.72000 -12.49021 -12.37485 -12.21028 -11.95593 -11.75381 -11.68162 -11.53461 -11.38756 -11.21040 -11.13506 -10.97145 -10.88631 -10.80984 -10.45930 -10.29485 -10.22527 -10.10731 -9.98409 -9.71626 -9.43065 -8.94798 -8.35093 -7.02892 -5.81848 -3.11758 2.65869 3.14433 3.41258 3.45966 3.46978 3.76090 4.33468 4.54897 4.55333 4.62199 4.75912 4.79957 4.90555 5.02479 5.08513 5.23561 5.28964 5.38058 5.42056 5.44189 5.46538 5.53377 5.57089 5.57281 5.61482 5.65738 5.66651 5.78968 5.83715 5.84774 5.93855 6.05184 6.07906 6.09240 6.12734 6.22010 6.24868 6.34174 6.56988 6.58381 6.74115 6.85672 7.00076 7.65220 7.82611 8.36408 8.42253 9.48111 10.03368 10.38447 11.40561 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.002672 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.182029 B =10475.439388 C =10608.818930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.085 4.085 5 C -0.115 4.115 6 H 0.117 0.883 7 C -0.148 4.148 8 C -0.185 4.185 9 H 0.120 0.880 10 C 0.555 3.445 11 O -0.545 6.545 12 N -0.605 5.605 13 C 0.100 3.900 14 C -0.154 4.154 15 C 0.173 3.827 16 H 0.064 0.936 17 N -0.717 5.717 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.128 3.872 27 H 0.070 0.930 28 C -0.158 4.158 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.391 0.609 45 H 0.257 0.743 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 20.460 -2.086 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.134 4.134 6 H 0.135 0.865 7 C -0.186 4.186 8 C -0.206 4.206 9 H 0.138 0.862 10 C 0.344 3.656 11 O -0.423 6.423 12 N -0.338 5.338 13 C -0.023 4.023 14 C -0.195 4.195 15 C 0.061 3.939 16 H 0.082 0.918 17 N -0.360 5.360 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.024 3.976 27 H 0.088 0.912 28 C -0.216 4.216 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.229 0.771 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.354 20.142 -2.629 23.775 hybrid contribution 0.586 -0.723 0.692 1.160 sum -11.768 19.419 -1.937 22.789 Atomic orbital electron populations 1.21845 0.95139 1.02093 1.01301 1.21108 0.96065 0.95884 0.98309 1.21848 1.01001 0.96051 1.01630 1.21284 1.00897 0.91979 0.98077 1.22409 1.01496 0.93911 0.95575 0.86516 1.23066 0.90689 1.03083 1.01752 1.22293 0.99729 0.93993 1.04578 0.86198 1.19230 0.76719 0.85466 0.84205 1.90664 1.54265 1.78072 1.19343 1.48513 1.63849 1.12093 1.09374 1.22386 0.99219 0.99475 0.81254 1.23592 0.98131 0.96791 1.01032 1.21180 0.91526 0.90057 0.91091 0.91840 1.42672 1.30122 1.37861 1.25389 1.19197 1.09282 1.09068 1.00049 0.91119 1.24761 0.98232 0.99921 0.97803 1.69653 1.19950 1.41324 1.26982 0.86245 0.77525 0.81510 0.80732 1.21209 1.21689 1.21235 1.21839 0.97602 0.80356 0.97770 0.91226 1.21997 0.97852 1.03280 0.98472 0.92894 0.93086 0.92202 0.91001 0.92693 0.92764 0.92788 0.91642 0.91377 0.88471 0.88052 0.91472 0.91719 0.90579 0.90739 0.77098 0.93317 0.90186 0.92203 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.01 37.15 0.33 -0.71 16 2 C -0.10 -0.72 2.88 -90.62 -0.26 -0.98 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.09 -0.69 4.96 -26.73 -0.13 -0.83 16 5 C -0.12 -1.19 4.24 -90.62 -0.38 -1.57 16 6 H 0.12 1.43 7.60 -51.93 -0.39 1.03 16 7 C -0.15 -1.41 9.88 -26.73 -0.26 -1.68 16 8 C -0.18 -2.15 5.25 -91.77 -0.48 -2.63 16 9 H 0.12 1.21 7.07 -51.93 -0.37 0.84 16 10 C 0.56 8.81 7.42 -10.99 -0.08 8.73 16 11 O -0.55 -10.47 15.17 5.56 0.08 -10.39 16 12 N -0.61 -9.58 3.09 -162.89 -0.50 -10.09 16 13 C 0.10 1.33 6.69 -2.41 -0.02 1.31 16 14 C -0.15 -2.53 6.79 -24.47 -0.17 -2.70 16 15 C 0.17 3.36 3.47 -66.10 -0.23 3.13 16 16 H 0.06 1.23 8.11 -51.93 -0.42 0.80 16 17 N -0.72 -17.44 4.98 -51.65 -0.26 -17.70 16 18 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 22 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.13 2.33 3.47 -66.96 -0.23 2.10 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 C -0.16 -3.07 7.94 37.16 0.30 -2.77 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 0.75 8.03 -51.93 -0.42 0.34 16 40 H 0.07 0.75 7.00 -51.93 -0.36 0.39 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.39 10.09 4.98 -40.82 -0.20 9.88 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.08 1.68 6.72 -51.92 -0.35 1.33 16 47 H 0.06 1.17 6.77 -51.93 -0.35 0.82 16 48 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -30.65 377.28 -9.51 -40.16 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -8.70 Total: 8.68 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.52 Total: -6.35 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.04 Total: -54.73 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.65 -9.51 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074897921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.658 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds