Wall clock time and date at job start Fri Apr 10 2020 20:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47352 * 2 1 4 4 C 1.53001 * 109.47644 * 120.00393 * 2 1 3 5 5 C 1.53004 * 109.46816 * 64.99645 * 4 2 1 6 6 H 1.09000 * 115.56280 * 29.31728 * 5 4 2 7 7 C 1.52997 * 117.49863 * 243.62263 * 5 4 2 8 8 C 1.53001 * 117.49596 * 175.00004 * 5 4 2 9 9 H 1.09002 * 117.51863 * 0.02562 * 8 5 4 10 10 C 1.50693 * 117.49755 * 214.97996 * 8 5 4 11 11 O 1.21283 * 120.00532 * 359.97438 * 10 8 5 12 12 N 1.34783 * 119.99982 * 179.97438 * 10 8 5 13 13 C 1.47428 * 125.64600 * 0.04158 * 12 10 8 14 14 C 1.55121 * 104.94041 * 203.96815 * 13 12 10 15 15 C 1.55153 * 101.48662 * 323.22250 * 14 13 12 16 16 H 1.09003 * 110.71747 * 276.82953 * 15 14 13 17 17 N 1.46506 * 110.71931 * 153.73723 * 15 14 13 18 18 C 1.36934 * 120.00324 * 88.83938 * 17 15 14 19 19 H 1.07997 * 119.99709 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00305 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99748 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46829 * 60.00824 * 22 20 18 24 24 H 1.48509 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47179 * 300.00361 * 22 20 18 26 26 C 1.47018 * 125.64997 * 180.02562 * 12 10 8 27 27 H 1.08995 * 109.88112 * 298.39166 * 26 12 10 28 28 C 1.52999 * 110.01041 * 59.48611 * 26 12 10 29 29 H 1.09005 * 109.46670 * 299.99420 * 1 2 3 30 30 H 1.08994 * 109.47765 * 59.99459 * 1 2 3 31 31 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46670 * 240.00580 * 2 1 3 33 33 H 1.08997 * 109.47390 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47162 * 300.00590 * 3 2 1 35 35 H 1.08997 * 109.46680 * 60.00261 * 3 2 1 36 36 H 1.08997 * 109.46847 * 304.99736 * 4 2 1 37 37 H 1.08996 * 109.47265 * 184.99898 * 4 2 1 38 38 H 1.09001 * 117.49877 * 145.02599 * 7 5 4 39 39 H 1.09004 * 117.51830 * 359.97438 * 7 5 4 40 40 H 1.09003 * 110.36480 * 322.93342 * 13 12 10 41 41 H 1.08997 * 110.36747 * 85.14624 * 13 12 10 42 42 H 1.09001 * 111.15992 * 205.12732 * 14 13 12 43 43 H 1.09003 * 110.93564 * 81.21521 * 14 13 12 44 44 H 0.97002 * 119.99472 * 268.83940 * 17 15 14 45 45 H 0.97000 * 119.99823 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.47066 * 177.88684 * 28 26 12 47 47 H 1.09004 * 109.47178 * 297.88293 * 28 26 12 48 48 H 1.08995 * 109.47192 * 57.88968 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 1 1.5388 -2.6155 0.1866 7 6 0.6791 -2.7110 2.2652 8 6 2.1540 -3.1171 2.2934 9 1 2.7833 -2.6734 3.0649 10 6 2.4923 -4.5360 1.9149 11 8 2.3494 -4.9087 0.7696 12 7 2.9539 -5.3909 2.8490 13 6 3.1735 -5.0724 4.2716 14 6 4.2347 -6.0970 4.7517 15 6 3.8170 -7.3665 3.9635 16 1 3.0138 -7.8934 4.4787 17 7 4.9668 -8.2511 3.7588 18 6 5.2744 -9.2021 4.6948 19 1 4.6692 -9.3002 5.5839 20 6 6.3634 -10.0405 4.5006 21 7 7.1008 -9.9212 3.4168 22 14 6.7826 -11.3382 5.7773 23 1 5.6361 -12.2693 5.9314 24 1 7.9811 -12.0967 5.3371 25 1 7.0641 -10.6799 7.0782 26 6 3.3213 -6.7956 2.6182 27 1 2.4506 -7.3552 2.2766 28 6 4.4366 -6.8803 1.5742 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6055 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2950 38 1 -0.0464 -3.4702 1.9729 39 1 0.3386 -2.0003 3.0183 40 1 3.5510 -4.0555 4.3788 41 1 2.2483 -5.1942 4.8349 42 1 4.1631 -6.2632 5.8265 43 1 5.2388 -5.7771 4.4734 44 1 5.5102 -8.1631 2.9601 45 1 7.8616 -10.5073 3.2809 46 1 4.7279 -7.9217 1.4374 47 1 4.0793 -6.4756 0.6272 48 1 5.2970 -6.3040 1.9141 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074897921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:06 Heat of formation + Delta-G solvation = -29.182608 kcal Electronic energy + Delta-G solvation = -24077.297740 eV Core-core repulsion = 20745.972031 eV Total energy + Delta-G solvation = -3331.325708 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44913 -39.57186 -38.14605 -35.92536 -35.80804 -33.42978 -32.11720 -30.71627 -28.45882 -27.93054 -26.80115 -25.95866 -24.79539 -23.30301 -22.05257 -20.92515 -20.70570 -19.78838 -19.44770 -18.22528 -17.03708 -16.83427 -16.48015 -15.99858 -15.87608 -15.48976 -15.08852 -15.01674 -14.63089 -14.51601 -14.13148 -13.91035 -13.72164 -13.36064 -13.24595 -13.05274 -12.98927 -12.88809 -12.86632 -12.77228 -12.52317 -12.34694 -12.13353 -12.07734 -12.06419 -11.77798 -11.60994 -11.54654 -11.47339 -11.07487 -10.93820 -10.88609 -10.68072 -9.66493 -9.01982 -7.93709 -5.23148 1.49159 1.49991 1.52052 1.57918 1.92359 2.57809 2.88842 3.34740 3.45115 3.70775 3.75452 3.82399 3.88077 3.94142 4.10307 4.16270 4.17804 4.21423 4.31245 4.37136 4.40309 4.54325 4.61303 4.64483 4.77572 4.79325 4.84834 4.86128 4.88443 4.90886 4.98304 5.03046 5.06008 5.12289 5.18380 5.22870 5.25107 5.33582 5.35329 5.43005 5.49657 5.51337 5.54340 5.57782 6.27546 6.59288 7.17078 7.34697 8.08095 8.31958 9.29827 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.002672 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.182029 B =10475.439388 C =10608.818930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.078 4.078 5 C -0.116 4.116 6 H 0.089 0.911 7 C -0.128 4.128 8 C -0.192 4.192 9 H 0.145 0.855 10 C 0.547 3.453 11 O -0.589 6.589 12 N -0.606 5.606 13 C 0.108 3.892 14 C -0.145 4.145 15 C 0.166 3.834 16 H 0.068 0.932 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.278 1.278 24 H -0.300 1.300 25 H -0.275 1.275 26 C 0.133 3.867 27 H 0.061 0.939 28 C -0.142 4.142 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.380 0.620 45 H 0.250 0.750 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 22.792 0.285 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.115 4.115 5 C -0.134 4.134 6 H 0.107 0.893 7 C -0.165 4.165 8 C -0.213 4.213 9 H 0.163 0.837 10 C 0.338 3.662 11 O -0.470 6.470 12 N -0.339 5.339 13 C -0.014 4.014 14 C -0.186 4.186 15 C 0.056 3.944 16 H 0.086 0.914 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.100 0.900 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.201 1.201 26 C 0.028 3.972 27 H 0.079 0.921 28 C -0.201 4.201 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.216 0.784 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.972 22.519 -0.211 26.502 hybrid contribution 0.992 -1.416 -0.112 1.733 sum -12.980 21.103 -0.323 24.778 Atomic orbital electron populations 1.21824 0.94675 1.01647 1.02011 1.21106 0.96467 0.96403 0.97560 1.21822 1.00907 0.95279 1.02263 1.21268 1.00864 0.90377 0.99021 1.22391 1.01924 0.94849 0.94274 0.89288 1.23180 0.89016 1.02730 1.01584 1.22305 1.01817 0.91127 1.06019 0.83730 1.20069 0.75657 0.86960 0.83476 1.90645 1.55990 1.79144 1.21222 1.48575 1.63702 1.10830 1.10763 1.22535 0.99435 1.00024 0.79442 1.23402 0.98178 0.95674 1.01318 1.21387 0.90151 0.90717 0.92173 0.91407 1.42853 1.31388 1.38595 1.24699 1.19627 1.08579 1.08624 1.00293 0.90019 1.25581 0.98848 1.02571 0.99893 1.69825 1.20665 1.42592 1.29159 0.85193 0.76844 0.78973 0.78614 1.20455 1.22674 1.20099 1.21574 0.96547 0.82353 0.96684 0.92112 1.21802 0.98058 1.01462 0.98757 0.91747 0.92852 0.93185 0.92611 0.92847 0.92498 0.91809 0.89644 0.91619 0.89589 0.84739 0.88264 0.88935 0.89160 0.92657 0.78433 0.94102 0.92473 0.92807 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.01 71.98 0.65 -1.15 16 2 C -0.10 -1.32 2.88 -10.79 -0.03 -1.35 16 3 C -0.15 -1.63 9.19 71.98 0.66 -0.96 16 4 C -0.08 -1.07 4.96 30.60 0.15 -0.92 16 5 C -0.12 -2.18 4.24 -10.79 -0.05 -2.23 16 6 H 0.09 2.21 7.60 -2.39 -0.02 2.19 16 7 C -0.13 -2.03 9.88 30.59 0.30 -1.73 16 8 C -0.19 -3.94 5.25 -11.54 -0.06 -4.00 16 9 H 0.15 2.26 7.07 -2.39 -0.02 2.25 16 10 C 0.55 16.85 7.42 87.65 0.65 17.50 16 11 O -0.59 -23.06 15.17 -3.04 -0.05 -23.11 16 12 N -0.61 -18.33 3.09 -787.64 -2.43 -20.76 16 13 C 0.11 2.48 6.69 86.93 0.58 3.07 16 14 C -0.14 -4.46 6.79 32.06 0.22 -4.24 16 15 C 0.17 6.33 3.47 46.18 0.16 6.49 16 16 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 17 N -0.73 -36.17 4.98 -317.33 -1.58 -37.75 16 18 C -0.24 -12.88 9.97 84.03 0.84 -12.05 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -59.38 13.06 21.65 0.28 -59.09 16 22 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.13 4.88 3.47 45.34 0.16 5.04 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 C -0.14 -5.79 7.94 71.98 0.57 -5.21 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.71 7.38 -2.39 -0.02 0.70 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.87 7.88 -2.39 -0.02 0.85 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 1.30 8.03 -2.38 -0.02 1.28 16 40 H 0.10 1.74 7.00 -2.39 -0.02 1.72 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.38 20.33 4.98 -92.71 -0.46 19.87 16 45 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.06 2.56 6.72 -2.38 -0.02 2.54 16 47 H 0.05 2.21 6.77 -2.38 -0.02 2.19 16 48 H 0.05 1.96 8.05 -2.39 -0.02 1.95 16 Total: -1.00 -68.61 377.28 3.98 -64.63 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.45 Total: 34.24 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.27 Total: -5.63 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -3.73 Total: -117.60 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.61 3.98 -64.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074897921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.446 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds