Wall clock time and date at job start Fri Apr 10 2020 20:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47479 * 2 1 4 4 C 1.50698 * 109.47363 * 120.00336 * 2 1 3 5 5 O 1.21278 * 120.00331 * 119.99714 * 4 2 1 6 6 N 1.34777 * 119.99670 * 299.99796 * 4 2 1 7 7 C 1.47422 * 125.65000 * 359.96024 * 6 4 2 8 8 C 1.54917 * 104.83237 * 204.16293 * 7 6 4 9 9 C 1.55155 * 101.58189 * 322.99082 * 8 7 6 10 10 H 1.09006 * 110.86995 * 277.07139 * 9 8 7 11 11 N 1.46490 * 110.72364 * 153.86509 * 9 8 7 12 12 C 1.36935 * 120.00121 * 91.47139 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 C 1.47023 * 125.64727 * 179.97438 * 6 4 2 21 21 H 1.09004 * 109.88663 * 298.32197 * 20 6 4 22 22 C 1.52997 * 110.01351 * 59.41639 * 20 6 4 23 23 C 1.53003 * 109.47040 * 240.00113 * 2 1 3 24 24 C 1.54265 * 110.03353 * 177.90757 * 23 2 1 25 25 C 1.54960 * 104.16294 * 217.13816 * 24 23 2 26 26 C 1.54896 * 102.77669 * 37.88555 * 25 24 23 27 27 C 1.53872 * 110.03163 * 60.69183 * 23 2 1 28 28 H 1.08995 * 109.47203 * 59.99737 * 1 2 3 29 29 H 1.08994 * 109.47617 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 299.99977 * 1 2 3 31 31 H 1.09003 * 110.36401 * 322.99515 * 7 6 4 32 32 H 1.08999 * 110.37131 * 85.21682 * 7 6 4 33 33 H 1.08996 * 111.00481 * 204.91038 * 8 7 6 34 34 H 1.09004 * 111.00233 * 81.06185 * 8 7 6 35 35 H 0.97000 * 120.00577 * 271.47738 * 11 9 8 36 36 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 37 37 H 1.08997 * 109.47535 * 177.88374 * 22 20 6 38 38 H 1.09004 * 109.47139 * 297.88630 * 22 20 6 39 39 H 1.09007 * 109.46978 * 57.87917 * 22 20 6 40 40 H 1.09003 * 110.01878 * 299.29874 * 23 2 1 41 41 H 1.08997 * 110.48718 * 335.78413 * 24 23 2 42 42 H 1.09005 * 110.48725 * 98.42697 * 24 23 2 43 43 H 1.09007 * 110.71796 * 279.57843 * 25 24 23 44 44 H 1.08993 * 110.77173 * 156.22405 * 25 24 23 45 45 H 1.08995 * 110.48287 * 203.40760 * 26 25 24 46 46 H 1.08996 * 110.59496 * 80.82294 * 26 25 24 47 47 H 1.09001 * 110.02945 * 238.57157 * 27 23 2 48 48 H 1.08996 * 110.03155 * 359.95040 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 0.8717 0.9324 2.7336 8 6 1.2967 1.3925 4.1505 9 6 1.5405 0.0340 4.8592 10 1 0.6042 -0.3856 5.2272 11 7 2.5038 0.1851 5.9524 12 6 2.0636 0.4580 7.2200 13 1 1.0062 0.5615 7.4139 14 6 2.9764 0.6017 8.2559 15 7 4.2652 0.4761 8.0196 16 14 2.3758 0.9734 9.9853 17 1 3.5397 1.0790 10.9015 18 1 1.6289 2.2569 9.9846 19 1 1.4815 -0.1196 10.4443 20 6 2.1258 -0.8436 3.7326 21 1 1.7385 -1.8592 3.8145 22 6 3.6528 -0.8602 3.8266 23 6 2.0399 -0.7212 -1.2493 24 6 3.5816 -0.6832 -1.2892 25 6 3.9178 -0.5060 -2.7914 26 6 2.8085 0.4588 -3.2792 27 6 1.5484 0.0041 -2.5142 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.0703 1.7178 2.0043 32 1 -0.1843 0.6626 2.7216 33 1 0.4958 1.9490 4.6373 34 1 2.2124 1.9826 4.1114 35 1 3.4535 0.0919 5.7785 36 1 4.5770 0.2828 7.1216 37 1 3.9531 -1.2669 4.7922 38 1 4.0592 -1.4813 3.0283 39 1 4.0341 0.1561 3.7259 40 1 1.6918 -1.7542 -1.2521 41 1 3.9574 0.1618 -0.7122 42 1 3.9962 -1.6182 -0.9123 43 1 3.8576 -1.4601 -3.3152 44 1 4.9029 -0.0568 -2.9167 45 1 2.6598 0.3566 -4.3542 46 1 3.0577 1.4891 -3.0257 47 1 0.9624 -0.6771 -3.1312 48 1 0.9459 0.8694 -2.2381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075030672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:09 Heat of formation + Delta-G solvation = -36.527596 kcal Electronic energy + Delta-G solvation = -25047.928180 eV Core-core repulsion = 21716.283969 eV Total energy + Delta-G solvation = -3331.644211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47315 -38.63983 -37.11438 -34.57628 -33.52959 -31.46703 -30.76266 -28.88388 -28.71473 -27.58920 -25.14577 -24.55811 -23.31560 -22.20429 -20.75117 -20.21464 -19.28687 -18.67539 -17.58274 -17.04341 -16.04073 -15.66105 -15.39691 -15.07935 -14.77416 -14.08648 -13.73817 -13.68998 -13.48868 -13.43029 -13.22486 -12.65654 -12.55768 -12.43748 -12.11242 -11.88940 -11.70603 -11.54400 -11.31874 -11.27294 -11.13782 -11.01899 -10.89522 -10.76255 -10.67396 -10.62107 -10.48952 -10.32605 -10.18205 -9.99877 -9.37775 -9.22299 -8.96710 -8.40316 -7.11179 -6.15573 -3.16809 2.82870 3.15198 3.49122 3.52300 3.70045 4.34233 4.45982 4.51107 4.62852 4.71364 4.92294 4.95496 5.00791 5.12851 5.24025 5.31942 5.33677 5.42371 5.46996 5.49002 5.51406 5.53711 5.59420 5.61099 5.65880 5.74091 5.75192 5.79097 5.84859 5.94323 5.96349 6.01028 6.04560 6.11367 6.16535 6.22893 6.28164 6.39407 6.46020 6.49664 6.63602 6.71157 6.89244 7.75130 7.78588 8.38760 8.69958 9.15353 10.01795 10.16121 11.32149 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.034218 B = 0.003261 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.089576 B = 8584.875220 C = 8982.373361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.530 3.470 5 O -0.540 6.540 6 N -0.609 5.609 7 C 0.098 3.902 8 C -0.154 4.154 9 C 0.179 3.821 10 H 0.066 0.934 11 N -0.728 5.728 12 C -0.336 4.336 13 H 0.065 0.935 14 C -0.043 4.043 15 N -0.941 5.941 16 Si 1.081 2.919 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.295 1.295 20 C 0.126 3.874 21 H 0.069 0.931 22 C -0.157 4.157 23 C -0.070 4.070 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.374 0.626 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 1.241 -20.985 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.111 0.889 4 C 0.319 3.681 5 O -0.417 6.417 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.196 4.196 9 C 0.067 3.933 10 H 0.084 0.916 11 N -0.372 5.372 12 C -0.467 4.467 13 H 0.083 0.917 14 C -0.240 4.240 15 N -0.586 5.586 16 Si 0.911 3.089 17 H -0.210 1.210 18 H -0.222 1.222 19 H -0.222 1.222 20 C 0.022 3.978 21 H 0.088 0.912 22 C -0.215 4.215 23 C -0.089 4.089 24 C -0.149 4.149 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.159 4.159 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.211 0.789 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.721 0.964 -19.439 20.590 hybrid contribution -0.369 -0.119 -1.595 1.641 sum -7.090 0.844 -21.033 22.212 Atomic orbital electron populations 1.21981 0.93262 1.02844 1.02973 1.21407 0.97316 1.00478 0.92926 0.88929 1.20256 0.80107 0.84528 0.83248 1.90654 1.38247 1.26649 1.86130 1.48603 1.50872 1.29487 1.05340 1.22438 0.94413 0.87312 0.98316 1.23550 1.01952 1.00862 0.93199 1.21109 0.93533 0.91618 0.87009 0.91612 1.42641 1.04358 1.85661 1.04520 1.20054 0.94061 1.46258 0.86311 0.91651 1.25801 0.94262 1.00449 1.03536 1.70893 1.13447 1.51410 1.22822 0.83233 0.74758 0.75788 0.75097 1.21019 1.22235 1.22210 1.21848 0.95840 0.97240 0.82850 0.91250 1.21990 0.94947 1.01983 1.02620 1.21561 0.95976 0.99374 0.91975 1.22387 0.94675 1.02574 0.95299 1.22551 0.98215 0.99218 0.96557 1.22358 0.95285 0.99298 0.99301 1.22274 0.97612 1.00036 0.95989 0.91439 0.92231 0.91378 0.91358 0.91502 0.90568 0.90940 0.78885 0.93397 0.90796 0.91903 0.92820 0.90514 0.92211 0.90573 0.91707 0.91870 0.92029 0.91812 0.91853 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.75 37.15 0.33 -1.07 16 2 C -0.10 -1.11 1.36 -91.77 -0.12 -1.23 16 3 H 0.09 0.96 7.83 -51.93 -0.41 0.55 16 4 C 0.53 7.98 6.74 -10.99 -0.07 7.91 16 5 O -0.54 -9.77 13.41 5.56 0.07 -9.69 16 6 N -0.61 -9.28 3.08 -163.01 -0.50 -9.78 16 7 C 0.10 1.27 5.14 -2.53 -0.01 1.26 16 8 C -0.15 -2.52 6.77 -24.58 -0.17 -2.68 16 9 C 0.18 3.48 3.49 -66.10 -0.23 3.25 16 10 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 11 N -0.73 -17.64 4.93 -51.65 -0.25 -17.90 16 12 C -0.34 -9.16 9.96 -15.06 -0.15 -9.31 16 13 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 14 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 15 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 16 Si 1.08 25.44 29.92 -169.99 -5.09 20.36 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.13 2.26 3.47 -66.95 -0.23 2.03 16 21 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 22 C -0.16 -2.97 7.93 37.16 0.29 -2.67 16 23 C -0.07 -0.75 2.11 -89.50 -0.19 -0.94 16 24 C -0.11 -1.30 5.15 -25.03 -0.13 -1.43 16 25 C -0.13 -1.19 6.91 -24.70 -0.17 -1.36 16 26 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 27 C -0.12 -1.01 5.92 -25.62 -0.15 -1.17 16 28 H 0.07 0.49 6.52 -51.93 -0.34 0.15 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.60 4.99 -51.93 -0.26 0.34 16 31 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 32 H 0.07 0.75 7.07 -51.93 -0.37 0.39 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.37 9.38 3.89 -40.82 -0.16 9.22 16 36 H 0.25 7.68 6.77 -40.82 -0.28 7.41 16 37 H 0.07 1.51 6.77 -51.93 -0.35 1.16 16 38 H 0.06 1.19 6.77 -51.93 -0.35 0.84 16 39 H 0.05 1.02 8.03 -51.93 -0.42 0.61 16 40 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 42 H 0.08 1.04 7.43 -51.93 -0.39 0.65 16 43 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.50 6.38 -51.93 -0.33 0.17 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -31.23 357.32 -9.19 -40.42 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.28 Total: 9.10 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.28 Total: -9.92 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.00 Total: -55.65 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.23 -9.19 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075030672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.893 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds