Wall clock time and date at job start Fri Apr 10 2020 20:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.88341 * 2 1 4 4 C 1.54914 * 111.00068 * 236.07872 * 2 1 3 5 5 N 1.47419 * 104.82874 * 204.91265 * 4 2 1 6 6 C 1.36939 * 125.64915 * 204.10653 * 5 4 2 7 7 H 1.08004 * 119.99957 * 354.82956 * 6 5 4 8 8 C 1.38806 * 120.00224 * 174.82698 * 6 5 4 9 9 N 1.31620 * 119.99943 * 7.05343 * 8 6 5 10 10 Si 1.86800 * 120.00293 * 187.05871 * 8 6 5 11 11 H 1.48494 * 109.47443 * 94.98338 * 10 8 6 12 12 H 1.48501 * 109.47250 * 214.98671 * 10 8 6 13 13 H 1.48507 * 109.46775 * 334.98369 * 10 8 6 14 14 C 1.47021 * 108.70632 * 24.13312 * 5 4 2 15 15 C 1.54329 * 107.27030 * 358.93736 * 14 5 4 16 16 H 1.08993 * 110.87058 * 96.23805 * 15 14 5 17 17 N 1.46492 * 110.72149 * 219.44689 * 15 14 5 18 18 C 1.34780 * 120.00115 * 268.52250 * 17 15 14 19 19 O 1.21280 * 119.99652 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00111 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47276 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47242 * 295.00241 * 21 20 18 23 23 C 1.52994 * 109.47350 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47118 * 60.00003 * 23 22 21 25 25 C 1.53005 * 109.46933 * 299.99689 * 24 23 22 26 26 C 1.53000 * 109.47387 * 174.99730 * 21 20 18 27 27 H 1.09002 * 109.47119 * 296.11983 * 1 2 3 28 28 H 1.09002 * 109.47171 * 56.11458 * 1 2 3 29 29 H 1.08999 * 109.47126 * 176.11766 * 1 2 3 30 30 H 1.08996 * 110.37000 * 323.75422 * 4 2 1 31 31 H 1.09002 * 110.36711 * 86.07494 * 4 2 1 32 32 H 0.96999 * 119.99802 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.88248 * 239.52171 * 14 5 4 34 34 H 1.09001 * 109.88489 * 118.35497 * 14 5 4 35 35 H 0.97005 * 120.00382 * 88.51592 * 17 15 14 36 36 H 1.09001 * 109.47207 * 299.99813 * 20 18 17 37 37 H 1.09005 * 109.47503 * 59.99821 * 20 18 17 38 38 H 1.09007 * 109.47149 * 54.99811 * 21 20 18 39 39 H 1.09007 * 109.46698 * 299.99847 * 22 21 20 40 40 H 1.08997 * 109.47200 * 59.99278 * 22 21 20 41 41 H 1.08993 * 109.47156 * 299.99594 * 23 22 21 42 42 H 1.09007 * 109.47263 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47345 * 180.02562 * 24 23 22 44 44 H 1.08993 * 109.47441 * 59.99765 * 24 23 22 45 45 H 1.08993 * 109.47120 * 300.00273 * 25 24 23 46 46 H 1.09008 * 109.47184 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47152 * 299.99909 * 26 21 20 48 48 H 1.09000 * 109.46918 * 60.00360 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8071 -1.2001 5 7 3.4271 -1.2433 -0.7730 6 6 4.4640 -1.5669 -1.6068 7 1 4.3097 -1.5935 -2.6754 8 6 5.7136 -1.8608 -1.0786 9 7 5.8694 -1.9648 0.2242 10 14 7.1740 -2.1085 -2.2166 11 1 7.9216 -0.8321 -2.3477 12 1 8.0693 -3.1509 -1.6534 13 1 6.6922 -2.5395 -3.5536 14 6 3.4675 -1.2739 0.6963 15 6 2.0861 -0.8075 1.2025 16 1 1.4451 -1.6609 1.4234 17 7 2.2287 0.0503 2.3814 18 6 2.2005 -0.4904 3.6156 19 8 2.0567 -1.6871 3.7502 20 6 2.3465 0.3922 4.8284 21 6 2.2798 -0.4650 6.0940 22 6 0.8887 -1.0904 6.2136 23 6 0.8221 -1.9481 7.4788 24 6 1.0946 -1.0724 8.7035 25 6 2.4859 -0.4471 8.5838 26 6 2.5522 0.4111 7.3183 27 1 -0.3633 0.4524 0.9227 28 1 -0.3633 0.5730 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 1.4518 -1.6709 -1.4019 31 1 2.1559 -0.1727 -2.0837 32 1 6.7426 -2.1705 0.5933 33 1 4.2426 -0.5994 1.0600 34 1 3.6651 -2.2890 1.0407 35 1 2.3434 1.0075 2.2737 36 1 3.3058 0.9082 4.7888 37 1 1.5400 1.1252 4.8436 38 1 3.0295 -1.2544 6.0381 39 1 0.1390 -0.3010 6.2695 40 1 0.6946 -1.7146 5.3414 41 1 1.5716 -2.7374 7.4225 42 1 -0.1692 -2.3933 7.5643 43 1 1.0477 -1.6835 9.6048 44 1 0.3452 -0.2831 8.7598 45 1 3.2354 -1.2364 8.5275 46 1 2.6800 0.1772 9.4562 47 1 3.5433 0.8566 7.2331 48 1 1.8026 1.2004 7.3743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079391413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:13 Heat of formation + Delta-G solvation = -47.409148 kcal Electronic energy + Delta-G solvation = -24603.469267 eV Core-core repulsion = 21271.353197 eV Total energy + Delta-G solvation = -3332.116070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.84981 -38.39714 -37.23853 -33.83043 -32.74754 -32.42533 -30.71077 -30.36046 -28.31813 -26.60444 -25.56753 -23.57751 -22.62600 -21.76155 -20.42757 -19.93840 -19.71450 -19.34887 -16.86706 -16.56926 -15.83590 -15.35273 -15.20274 -14.77679 -14.24086 -14.18544 -13.95684 -13.73838 -13.36232 -13.12759 -12.77705 -12.68884 -12.41664 -12.19987 -11.96546 -11.92146 -11.65146 -11.57403 -11.32109 -11.13199 -10.98656 -10.94046 -10.78081 -10.58164 -10.43716 -10.37333 -10.19318 -10.01848 -9.96740 -9.90934 -9.67160 -9.22084 -8.58360 -8.36946 -6.81061 -5.68679 -3.02720 3.08044 3.41432 3.46327 3.49092 3.61471 4.51811 4.62965 4.70869 4.72894 5.01538 5.10355 5.15069 5.23099 5.32269 5.36485 5.47284 5.48358 5.49790 5.55762 5.57430 5.60661 5.65827 5.75984 5.79282 5.88922 5.99132 6.01205 6.02837 6.09635 6.17208 6.17788 6.20405 6.23893 6.27634 6.38111 6.51330 6.53124 6.56452 6.65109 6.85676 6.99249 7.58016 7.64330 7.87166 8.00319 8.27756 8.70467 9.23355 9.84291 10.49916 11.42271 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.003601 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.296630 B = 7774.370741 C = 8804.955487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.087 0.913 17 N -0.715 5.715 18 C 0.511 3.489 19 O -0.537 6.537 20 C -0.137 4.137 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.115 4.115 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.252 0.748 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.395 0.605 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 7.778 13.377 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.105 0.895 17 N -0.365 5.365 18 C 0.297 3.703 19 O -0.414 6.414 20 C -0.177 4.177 21 C -0.089 4.089 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.152 4.152 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.873 6.825 13.485 18.618 hybrid contribution 0.999 0.393 -0.649 1.254 sum -9.874 7.218 12.835 17.730 Atomic orbital electron populations 1.21691 0.95139 1.01715 1.00877 1.22614 0.94744 0.99489 0.96566 0.90552 1.21591 0.87643 0.94970 0.94388 1.44424 1.08073 1.78968 1.01836 1.19055 0.87392 1.40344 0.89131 0.90341 1.24842 0.97626 1.01883 0.95993 1.69999 1.22484 1.54381 1.09521 0.86127 0.82818 0.77361 0.79645 1.21664 1.21769 1.20619 1.21476 0.90276 1.00236 0.83325 1.22451 1.00072 0.92823 0.83102 0.89474 1.45975 1.73915 1.10826 1.05811 1.20570 0.76194 0.89061 0.84456 1.90662 1.48947 1.15596 1.86236 1.21746 1.03851 0.98840 0.93311 1.20896 0.98847 0.97311 0.91878 1.21701 0.95809 0.99315 0.98814 1.21505 1.01270 0.98219 0.94545 1.21548 0.97061 0.99105 0.97949 1.21524 0.97420 0.99296 0.97392 1.21610 1.01399 0.97882 0.94326 0.93169 0.92867 0.92655 0.96142 0.94004 0.93772 0.93079 0.93765 0.77206 0.89080 0.89466 0.90234 0.93011 0.89752 0.91933 0.92448 0.92513 0.92326 0.91928 0.92353 0.92026 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.31 37.16 0.35 -1.49 16 2 C -0.11 -1.92 3.27 -88.47 -0.29 -2.21 16 3 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 4 C 0.14 2.89 6.70 -2.53 -0.02 2.88 16 5 N -0.61 -15.71 3.39 -170.07 -0.58 -16.29 16 6 C -0.23 -6.53 10.26 -15.06 -0.15 -6.69 16 7 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 8 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 9 N -0.92 -27.64 10.36 55.49 0.57 -27.07 16 10 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.17 4.32 5.13 -3.06 -0.02 4.31 16 15 C 0.12 2.32 2.79 -66.10 -0.18 2.13 16 16 H 0.09 1.80 7.44 -51.93 -0.39 1.41 16 17 N -0.72 -11.37 5.10 -52.04 -0.27 -11.64 16 18 C 0.51 8.28 7.55 -10.99 -0.08 8.19 16 19 O -0.54 -10.82 13.61 5.56 0.08 -10.74 16 20 C -0.14 -1.61 5.17 -27.89 -0.14 -1.75 16 21 C -0.07 -0.84 1.84 -90.62 -0.17 -1.00 16 22 C -0.12 -1.43 4.94 -26.73 -0.13 -1.57 16 23 C -0.12 -1.27 5.92 -26.74 -0.16 -1.43 16 24 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 25 C -0.12 -1.08 5.92 -26.70 -0.16 -1.24 16 26 C -0.11 -1.09 5.21 -26.71 -0.14 -1.23 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.05 1.40 7.18 -51.93 -0.37 1.03 16 34 H 0.04 1.29 7.61 -51.93 -0.40 0.90 16 35 H 0.39 5.13 8.56 -40.82 -0.35 4.78 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.14 7.96 -51.93 -0.41 0.72 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -32.44 367.67 -10.17 -42.60 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.94 Total: 2.85 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.55 Total: -2.62 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.27 Total: -54.99 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.44 -10.17 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079391413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.806 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds