Wall clock time and date at job start Fri Apr 10 2020 20:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.88341 * 2 1 4 4 C 1.54914 * 111.00068 * 236.07872 * 2 1 3 5 5 N 1.47419 * 104.82874 * 204.91265 * 4 2 1 6 6 C 1.36939 * 125.64915 * 204.10653 * 5 4 2 7 7 H 1.08004 * 119.99957 * 354.82956 * 6 5 4 8 8 C 1.38806 * 120.00224 * 174.82698 * 6 5 4 9 9 N 1.31620 * 119.99943 * 7.05343 * 8 6 5 10 10 Si 1.86800 * 120.00293 * 187.05871 * 8 6 5 11 11 H 1.48494 * 109.47443 * 94.98338 * 10 8 6 12 12 H 1.48501 * 109.47250 * 214.98671 * 10 8 6 13 13 H 1.48507 * 109.46775 * 334.98369 * 10 8 6 14 14 C 1.47021 * 108.70632 * 24.13312 * 5 4 2 15 15 C 1.54329 * 107.27030 * 358.93736 * 14 5 4 16 16 H 1.08993 * 110.87058 * 96.23805 * 15 14 5 17 17 N 1.46492 * 110.72149 * 219.44689 * 15 14 5 18 18 C 1.34780 * 120.00115 * 268.52250 * 17 15 14 19 19 O 1.21280 * 119.99652 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00111 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47276 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47242 * 295.00241 * 21 20 18 23 23 C 1.52994 * 109.47350 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47118 * 60.00003 * 23 22 21 25 25 C 1.53005 * 109.46933 * 299.99689 * 24 23 22 26 26 C 1.53000 * 109.47387 * 174.99730 * 21 20 18 27 27 H 1.09002 * 109.47119 * 296.11983 * 1 2 3 28 28 H 1.09002 * 109.47171 * 56.11458 * 1 2 3 29 29 H 1.08999 * 109.47126 * 176.11766 * 1 2 3 30 30 H 1.08996 * 110.37000 * 323.75422 * 4 2 1 31 31 H 1.09002 * 110.36711 * 86.07494 * 4 2 1 32 32 H 0.96999 * 119.99802 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.88248 * 239.52171 * 14 5 4 34 34 H 1.09001 * 109.88489 * 118.35497 * 14 5 4 35 35 H 0.97005 * 120.00382 * 88.51592 * 17 15 14 36 36 H 1.09001 * 109.47207 * 299.99813 * 20 18 17 37 37 H 1.09005 * 109.47503 * 59.99821 * 20 18 17 38 38 H 1.09007 * 109.47149 * 54.99811 * 21 20 18 39 39 H 1.09007 * 109.46698 * 299.99847 * 22 21 20 40 40 H 1.08997 * 109.47200 * 59.99278 * 22 21 20 41 41 H 1.08993 * 109.47156 * 299.99594 * 23 22 21 42 42 H 1.09007 * 109.47263 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47345 * 180.02562 * 24 23 22 44 44 H 1.08993 * 109.47441 * 59.99765 * 24 23 22 45 45 H 1.08993 * 109.47120 * 300.00273 * 25 24 23 46 46 H 1.09008 * 109.47184 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47152 * 299.99909 * 26 21 20 48 48 H 1.09000 * 109.46918 * 60.00360 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8071 -1.2001 5 7 3.4271 -1.2433 -0.7730 6 6 4.4640 -1.5669 -1.6068 7 1 4.3097 -1.5935 -2.6754 8 6 5.7136 -1.8608 -1.0786 9 7 5.8694 -1.9648 0.2242 10 14 7.1740 -2.1085 -2.2166 11 1 7.9216 -0.8321 -2.3477 12 1 8.0693 -3.1509 -1.6534 13 1 6.6922 -2.5395 -3.5536 14 6 3.4675 -1.2739 0.6963 15 6 2.0861 -0.8075 1.2025 16 1 1.4451 -1.6609 1.4234 17 7 2.2287 0.0503 2.3814 18 6 2.2005 -0.4904 3.6156 19 8 2.0567 -1.6871 3.7502 20 6 2.3465 0.3922 4.8284 21 6 2.2798 -0.4650 6.0940 22 6 0.8887 -1.0904 6.2136 23 6 0.8221 -1.9481 7.4788 24 6 1.0946 -1.0724 8.7035 25 6 2.4859 -0.4471 8.5838 26 6 2.5522 0.4111 7.3183 27 1 -0.3633 0.4524 0.9227 28 1 -0.3633 0.5730 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 1.4518 -1.6709 -1.4019 31 1 2.1559 -0.1727 -2.0837 32 1 6.7426 -2.1705 0.5933 33 1 4.2426 -0.5994 1.0600 34 1 3.6651 -2.2890 1.0407 35 1 2.3434 1.0075 2.2737 36 1 3.3058 0.9082 4.7888 37 1 1.5400 1.1252 4.8436 38 1 3.0295 -1.2544 6.0381 39 1 0.1390 -0.3010 6.2695 40 1 0.6946 -1.7146 5.3414 41 1 1.5716 -2.7374 7.4225 42 1 -0.1692 -2.3933 7.5643 43 1 1.0477 -1.6835 9.6048 44 1 0.3452 -0.2831 8.7598 45 1 3.2354 -1.2364 8.5275 46 1 2.6800 0.1772 9.4562 47 1 3.5433 0.8566 7.2331 48 1 1.8026 1.2004 7.3743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079391413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:13 Heat of formation + Delta-G solvation = -67.476626 kcal Electronic energy + Delta-G solvation = -24604.339458 eV Core-core repulsion = 21271.353197 eV Total energy + Delta-G solvation = -3332.986262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14833 -39.64631 -38.61001 -35.58532 -34.27627 -33.50896 -32.18064 -31.53019 -29.85694 -27.94863 -27.22812 -25.25133 -23.47224 -22.92303 -21.93962 -21.52809 -20.75908 -20.53776 -18.89028 -17.85814 -17.35181 -16.89735 -16.27623 -16.18524 -15.60954 -15.54387 -14.95322 -14.89330 -14.79287 -14.58877 -14.21897 -14.06106 -13.78698 -13.35967 -13.26867 -13.11517 -12.93243 -12.86572 -12.81795 -12.60879 -12.48600 -12.17802 -12.01647 -11.91938 -11.88478 -11.80160 -11.65867 -11.45043 -11.29434 -11.17325 -10.87229 -10.75540 -10.49144 -9.89074 -8.93956 -7.87406 -5.24573 1.43337 1.45758 1.55028 1.77530 2.29694 2.49021 3.30433 3.58261 3.73589 3.75891 3.85941 3.88395 4.06475 4.11044 4.11800 4.28626 4.37628 4.48098 4.54437 4.60407 4.61475 4.67968 4.71127 4.72682 4.79959 4.87222 4.88388 4.91379 5.05667 5.06652 5.08991 5.21170 5.25574 5.29711 5.31365 5.35356 5.38702 5.42852 5.45589 5.49537 5.59884 5.64551 5.66765 5.81936 6.15071 6.70795 7.04876 7.42937 7.74049 8.38443 9.22213 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.003601 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.296630 B = 7774.370741 C = 8804.955487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.244 4.244 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.981 3.019 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.265 1.265 14 C 0.188 3.812 15 C 0.137 3.863 16 H 0.069 0.931 17 N -0.706 5.706 18 C 0.503 3.497 19 O -0.584 6.584 20 C -0.127 4.127 21 C -0.071 4.071 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.108 4.108 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.244 0.756 33 H 0.020 0.980 34 H -0.017 1.017 35 H 0.413 0.587 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 10.707 13.616 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 H 0.111 0.889 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.373 4.373 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.809 3.191 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.189 1.189 14 C 0.061 3.939 15 C 0.030 3.970 16 H 0.088 0.912 17 N -0.357 5.357 18 C 0.292 3.708 19 O -0.464 6.464 20 C -0.166 4.166 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.146 4.146 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.001 0.999 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.448 9.802 13.703 20.948 hybrid contribution 1.454 -0.604 -0.754 1.745 sum -10.995 9.198 12.949 19.317 Atomic orbital electron populations 1.21640 0.91775 1.02086 1.03027 1.22531 0.97229 0.98902 0.92653 0.88928 1.21868 0.85220 0.95721 0.96579 1.44758 1.09718 1.78994 1.02033 1.19520 0.88330 1.39460 0.89976 0.89478 1.25753 1.00576 1.02355 0.97474 1.70262 1.22412 1.55878 1.11504 0.85025 0.78926 0.77042 0.78145 1.20977 1.22544 1.18929 1.21128 0.93046 0.96209 0.83497 1.21971 0.96059 0.93635 0.85320 0.91247 1.45843 1.73649 1.11379 1.04867 1.21517 0.74701 0.89060 0.85557 1.90658 1.50791 1.18032 1.86896 1.21796 1.06081 0.98390 0.90380 1.20879 0.97669 0.96972 0.93466 1.21633 0.96457 0.99451 0.97831 1.21510 1.00945 0.98041 0.95208 1.21522 0.97399 0.99191 0.97036 1.21556 0.97042 0.99200 0.98051 1.21576 1.02441 0.97729 0.92808 0.91277 0.90355 0.93312 0.95975 0.92607 0.94637 0.96191 0.99874 0.75053 0.87475 0.85706 0.93924 0.91008 0.93334 0.94022 0.91916 0.91659 0.90885 0.93407 0.90414 0.91388 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.31 71.98 0.67 -2.35 16 2 C -0.09 -2.97 3.27 -9.40 -0.03 -3.00 16 3 H 0.09 2.69 8.01 -2.39 -0.02 2.67 16 4 C 0.13 5.30 6.70 86.86 0.58 5.88 16 5 N -0.63 -33.40 3.39 -691.99 -2.35 -35.75 16 6 C -0.24 -14.07 10.26 84.03 0.86 -13.20 16 7 H 0.09 4.73 7.84 -2.91 -0.02 4.71 16 8 C -0.07 -4.06 5.48 84.86 0.46 -3.59 16 9 N -0.95 -60.30 10.36 21.65 0.22 -60.08 16 10 Si 0.98 47.00 29.56 68.60 2.03 49.02 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.19 9.93 5.13 86.73 0.45 10.37 16 15 C 0.14 5.34 2.79 46.18 0.13 5.47 16 16 H 0.07 2.98 7.44 -2.39 -0.02 2.96 16 17 N -0.71 -22.15 5.10 -436.93 -2.23 -24.38 16 18 C 0.50 16.46 7.55 87.66 0.66 17.12 16 19 O -0.58 -24.95 13.61 -3.03 -0.04 -24.99 16 20 C -0.13 -2.75 5.17 29.85 0.15 -2.60 16 21 C -0.07 -1.65 1.84 -10.79 -0.02 -1.67 16 22 C -0.12 -2.77 4.94 30.59 0.15 -2.62 16 23 C -0.12 -2.56 5.92 30.59 0.18 -2.38 16 24 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 25 C -0.12 -1.98 5.92 30.61 0.18 -1.80 16 26 C -0.11 -1.79 5.21 30.61 0.16 -1.63 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.23 8.07 -2.39 -0.02 1.21 16 30 H 0.02 0.90 7.98 -2.39 -0.02 0.88 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.02 1.16 7.18 -2.39 -0.02 1.14 16 34 H -0.02 -1.09 7.61 -2.39 -0.02 -1.11 16 35 H 0.41 9.88 8.56 -92.70 -0.79 9.08 16 36 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.04 1.29 7.96 -2.38 -0.02 1.27 16 39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.51 5.95 -2.39 -0.01 1.50 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.84 367.67 2.52 -74.32 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.12 Total: 19.52 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 4.77 Total: 2.34 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.35 Total: -120.21 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -76.84 2.52 -74.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079391413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.841 kcal (2) G-P(sol) polarization free energy of solvation -76.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds