Wall clock time and date at job start Fri Apr 10 2020 20:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.91462 * 2 1 4 4 C 1.54907 * 111.00100 * 236.09901 * 2 1 3 5 5 N 1.47426 * 104.82789 * 204.91681 * 4 2 1 6 6 C 1.36935 * 125.64579 * 204.09136 * 5 4 2 7 7 H 1.08000 * 120.00518 * 359.73142 * 6 5 4 8 8 C 1.38817 * 119.99990 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47019 * 108.70639 * 24.35607 * 5 4 2 15 15 C 1.54337 * 107.26147 * 358.58796 * 14 5 4 16 16 H 1.09003 * 110.67176 * 96.52401 * 15 14 5 17 17 N 1.46503 * 110.84723 * 219.66830 * 15 14 5 18 18 C 1.34773 * 120.00419 * 268.69205 * 17 15 14 19 19 O 1.21288 * 119.99773 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00153 * 179.97438 * 18 17 15 21 21 C 1.54237 * 108.89880 * 301.39458 * 20 18 17 22 22 C 1.50553 * 108.48335 * 159.17335 * 21 20 18 23 23 C 1.54072 * 112.41408 * 94.26984 * 22 21 20 24 24 C 1.54070 * 112.81482 * 318.28517 * 23 22 21 25 25 C 1.50475 * 112.49408 * 318.27835 * 24 23 22 26 26 C 1.45546 * 108.89549 * 178.60520 * 20 18 17 27 27 H 1.09000 * 109.47487 * 182.44298 * 1 2 3 28 28 H 1.09007 * 109.47229 * 302.44908 * 1 2 3 29 29 H 1.09004 * 109.47014 * 62.44504 * 1 2 3 30 30 H 1.09000 * 110.36784 * 86.08459 * 4 2 1 31 31 H 1.08994 * 110.46168 * 323.80342 * 4 2 1 32 32 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.88145 * 118.12896 * 14 5 4 34 34 H 1.08997 * 109.88249 * 239.29737 * 14 5 4 35 35 H 0.97002 * 119.99738 * 88.69317 * 17 15 14 36 36 H 1.09005 * 108.87166 * 60.00725 * 20 18 17 37 37 H 1.08992 * 109.63275 * 278.97591 * 21 20 18 38 38 H 1.09006 * 109.62443 * 39.55751 * 21 20 18 39 39 H 1.09006 * 108.92470 * 333.51971 * 22 21 20 40 40 H 1.08997 * 108.92047 * 215.02225 * 22 21 20 41 41 H 1.08996 * 108.81600 * 197.42133 * 23 22 21 42 42 H 1.09004 * 108.72498 * 79.07890 * 23 22 21 43 43 H 1.08998 * 108.87656 * 197.50917 * 24 23 22 44 44 H 1.09000 * 108.80118 * 79.00283 * 24 23 22 45 45 H 1.09002 * 109.62810 * 334.44848 * 25 24 23 46 46 H 1.08998 * 109.79366 * 213.96186 * 25 24 23 47 47 H 1.09005 * 108.89332 * 303.44373 * 26 20 18 48 48 H 1.09003 * 108.89624 * 62.03237 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2431 -0.7733 6 6 4.4639 -1.5667 -1.6072 7 1 4.3318 -1.5163 -2.6779 8 6 5.6833 -1.9644 -1.0763 9 7 5.8428 -2.0309 0.2284 10 14 7.0975 -2.4066 -2.2139 11 1 6.6643 -2.2514 -3.6258 12 1 8.2474 -1.5054 -1.9474 13 1 7.5053 -3.8140 -1.9727 14 6 3.4657 -1.2794 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4450 -1.6614 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2003 -0.4916 3.6155 19 8 2.0574 -1.6886 3.7497 20 6 2.3475 0.3903 4.8286 21 6 3.6931 1.1391 4.7415 22 6 3.6212 2.3543 5.6273 23 6 4.1884 2.0895 7.0352 24 6 3.7667 0.7200 7.6013 25 6 2.3233 0.4007 7.3202 26 6 2.2493 -0.4331 6.0247 27 1 -0.3634 -1.0267 0.0438 28 1 -0.3634 0.5514 0.8673 29 1 -0.3633 0.4754 -0.9111 30 1 2.1560 -0.1719 -2.0837 31 1 1.4524 -1.6703 -1.4043 32 1 6.6947 -2.3092 0.5993 33 1 3.6600 -2.2964 1.0366 34 1 4.2423 -0.6085 1.0630 35 1 2.3432 1.0067 2.2742 36 1 1.5373 1.1196 4.8346 37 1 4.4981 0.4858 5.0779 38 1 3.8743 1.4479 3.7120 39 1 2.5801 2.6638 5.7191 40 1 4.1879 3.1626 5.1651 41 1 3.8373 2.8714 7.7084 42 1 5.2766 2.1300 6.9873 43 1 3.9240 0.7207 8.6798 44 1 4.3923 -0.0526 7.1544 45 1 1.7616 1.3261 7.1926 46 1 1.9038 -0.1710 8.1480 47 1 1.3020 -0.9721 6.0054 48 1 3.0659 -1.1552 6.0242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079484608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:16 Heat of formation + Delta-G solvation = -38.405511 kcal Electronic energy + Delta-G solvation = -25064.405796 eV Core-core repulsion = 21732.680152 eV Total energy + Delta-G solvation = -3331.725643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24338 -38.32955 -37.13760 -33.90227 -32.82426 -32.40497 -31.93821 -30.35013 -27.82619 -25.68784 -25.28465 -24.70330 -23.48937 -21.47706 -20.25823 -19.94277 -19.39924 -19.23655 -17.01870 -16.82053 -16.01374 -15.49192 -15.05385 -14.85551 -14.57963 -13.85593 -13.77342 -13.58150 -13.39792 -13.14768 -13.01840 -12.74442 -12.61071 -12.28261 -12.17782 -11.86850 -11.68358 -11.32599 -11.18391 -10.99932 -10.84557 -10.77978 -10.69244 -10.66835 -10.52061 -10.41320 -10.34270 -10.23734 -9.94782 -9.89542 -9.68220 -9.22675 -8.60167 -8.38049 -6.80989 -5.67244 -3.02352 3.04650 3.41423 3.46599 3.49528 3.59238 4.51541 4.56076 4.65421 4.73918 5.01718 5.04157 5.09506 5.16444 5.19066 5.26870 5.33915 5.34577 5.47296 5.56510 5.59391 5.69725 5.78871 5.79160 5.88455 6.01896 6.02232 6.03247 6.08108 6.09676 6.11470 6.18043 6.19663 6.24442 6.28981 6.37790 6.39308 6.45707 6.52507 6.65192 6.85012 6.98878 7.60036 7.62859 7.87898 8.00063 8.28107 8.69188 9.24074 9.84731 10.49930 11.43435 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.004301 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.163683 B = 6509.152990 C = 7602.787039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.174 3.826 15 C 0.119 3.881 16 H 0.087 0.913 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.542 6.542 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.114 4.114 26 C -0.107 4.107 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.251 0.749 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 10.583 12.103 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.048 3.952 15 C 0.014 3.986 16 H 0.105 0.895 17 N -0.362 5.362 18 C 0.298 3.702 19 O -0.418 6.418 20 C -0.118 4.118 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.529 9.628 12.200 17.728 hybrid contribution 0.940 0.196 -0.646 1.157 sum -7.589 9.824 11.554 16.959 Atomic orbital electron populations 1.21689 0.95120 1.01690 1.00903 1.22607 0.94763 0.99477 0.96542 0.90546 1.21576 0.87648 0.95030 0.94335 1.44426 1.07851 1.79158 1.01866 1.19104 0.89265 1.38478 0.88959 0.90302 1.24820 0.97871 1.01731 0.95984 1.69989 1.24046 1.53371 1.09196 0.86061 0.82416 0.77787 0.79593 1.20497 1.21802 1.21748 1.21464 0.90214 1.00245 0.83260 1.22483 1.00181 0.92809 0.83092 0.89528 1.45938 1.73740 1.10809 1.05716 1.20673 0.76078 0.88890 0.84609 1.90694 1.49153 1.15594 1.86407 1.20264 0.99589 0.98111 0.93837 1.21400 0.96073 0.96942 1.00444 1.21348 1.01341 0.97688 0.95034 1.21916 1.00509 0.96961 0.96036 1.21378 0.96874 0.97535 1.00160 1.21303 0.96699 0.99894 0.97214 1.20325 1.03657 0.97899 0.92553 0.92675 0.93202 0.92803 0.94043 0.96116 0.93816 0.93630 0.93127 0.77152 0.89325 0.90668 0.91040 0.92042 0.92004 0.92538 0.92318 0.92585 0.91752 0.91804 0.91906 0.91543 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.29 37.16 0.35 -1.50 16 2 C -0.11 -1.92 3.27 -88.47 -0.29 -2.21 16 3 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 4 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 5 N -0.61 -15.72 3.39 -170.07 -0.58 -16.30 16 6 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.73 10.31 55.49 0.57 -27.16 16 10 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.17 4.37 5.13 -3.06 -0.02 4.35 16 15 C 0.12 2.32 2.78 -66.09 -0.18 2.13 16 16 H 0.09 1.82 7.42 -51.93 -0.39 1.43 16 17 N -0.71 -11.51 4.81 -52.02 -0.25 -11.77 16 18 C 0.51 8.58 7.10 -10.99 -0.08 8.50 16 19 O -0.54 -11.47 15.43 5.55 0.09 -11.38 16 20 C -0.10 -1.18 2.03 -94.64 -0.19 -1.38 16 21 C -0.11 -1.28 4.95 -27.31 -0.14 -1.41 16 22 C -0.12 -1.06 5.32 -27.39 -0.15 -1.20 16 23 C -0.12 -1.01 5.85 -25.61 -0.15 -1.16 16 24 C -0.12 -1.13 5.32 -27.43 -0.15 -1.27 16 25 C -0.11 -1.07 5.61 -27.34 -0.15 -1.22 16 26 C -0.11 -1.30 3.83 -29.60 -0.11 -1.42 16 27 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.05 1.34 7.52 -51.93 -0.39 0.95 16 34 H 0.05 1.39 7.25 -51.93 -0.38 1.01 16 35 H 0.39 5.26 7.83 -40.82 -0.32 4.94 16 36 H 0.09 0.90 7.47 -51.93 -0.39 0.51 16 37 H 0.07 0.97 6.96 -51.93 -0.36 0.61 16 38 H 0.07 0.86 7.03 -51.93 -0.37 0.50 16 39 H 0.06 0.50 6.63 -51.93 -0.34 0.16 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.68 6.62 -51.93 -0.34 0.33 16 45 H 0.06 0.55 6.98 -51.93 -0.36 0.18 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 48 H 0.07 1.00 7.37 -51.93 -0.38 0.62 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -32.73 360.16 -9.90 -42.63 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.61 Total: 3.00 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.26 Total: -55.22 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.73 -9.90 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079484608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.227 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds