Wall clock time and date at job start Fri Apr 10 2020 20:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.88972 * 2 1 4 4 C 1.54917 * 111.00437 * 236.12061 * 2 1 3 5 5 N 1.47416 * 104.93059 * 204.86001 * 4 2 1 6 6 C 1.36939 * 125.64974 * 204.15507 * 5 4 2 7 7 H 1.08000 * 119.99999 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00006 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00081 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47298 * 120.00294 * 10 8 6 13 13 H 1.48503 * 109.47498 * 240.00689 * 10 8 6 14 14 C 1.47292 * 108.55819 * 24.15625 * 5 4 2 15 15 C 1.54325 * 107.30746 * 358.92145 * 14 5 4 16 16 H 1.09005 * 110.86543 * 96.24927 * 15 14 5 17 17 N 1.46490 * 110.72359 * 219.45298 * 15 14 5 18 18 C 1.34778 * 120.00533 * 268.52540 * 17 15 14 19 19 O 1.21287 * 119.99636 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00226 * 179.97438 * 18 17 15 21 21 C 1.53000 * 117.49388 * 128.44523 * 20 18 17 22 22 C 1.52996 * 117.50634 * 359.97438 * 21 20 18 23 23 C 1.53008 * 117.49611 * 145.02178 * 21 20 18 24 24 C 1.53001 * 117.49820 * 59.82310 * 20 18 17 25 25 C 1.52996 * 117.49959 * 214.97568 * 24 20 18 26 26 C 1.53000 * 117.49789 * 0.02562 * 24 20 18 27 27 H 1.09000 * 109.47230 * 182.42411 * 1 2 3 28 28 H 1.08994 * 109.47257 * 302.42403 * 1 2 3 29 29 H 1.09000 * 109.47514 * 62.42546 * 1 2 3 30 30 H 1.08996 * 110.36344 * 323.75776 * 4 2 1 31 31 H 1.09000 * 110.36507 * 85.96548 * 4 2 1 32 32 H 0.96994 * 119.99564 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.85827 * 239.50490 * 14 5 4 34 34 H 1.09002 * 110.00347 * 118.42993 * 14 5 4 35 35 H 0.97004 * 119.99763 * 88.52513 * 17 15 14 36 36 H 1.08996 * 115.55062 * 274.15310 * 20 18 17 37 37 H 1.08997 * 109.46935 * 111.38875 * 22 21 20 38 38 H 1.08996 * 109.47598 * 231.39362 * 22 21 20 39 39 H 1.09004 * 109.46390 * 351.39270 * 22 21 20 40 40 H 1.09003 * 109.46674 * 8.60787 * 23 21 20 41 41 H 1.09005 * 109.46783 * 128.60318 * 23 21 20 42 42 H 1.08993 * 109.47011 * 248.60604 * 23 21 20 43 43 H 1.09003 * 109.46974 * 111.38714 * 25 24 20 44 44 H 1.08998 * 109.47683 * 231.39133 * 25 24 20 45 45 H 1.08999 * 109.46868 * 351.39637 * 25 24 20 46 46 H 1.08995 * 109.47780 * 53.81965 * 26 24 20 47 47 H 1.09000 * 109.47263 * 173.82626 * 26 24 20 48 48 H 1.09006 * 109.46610 * 293.81470 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4279 -1.2428 -0.7767 6 6 4.4636 -1.5645 -1.6127 7 1 4.3312 -1.5078 -2.6831 8 6 5.6840 -1.9626 -1.0845 9 7 5.8456 -2.0313 0.2200 10 14 7.0966 -2.4022 -2.2250 11 1 6.6610 -2.2447 -3.6360 12 1 8.2465 -1.5011 -1.9589 13 1 7.5054 -3.8099 -1.9869 14 6 3.4674 -1.2744 0.6954 15 6 2.0862 -0.8084 1.2019 16 1 1.4451 -1.6620 1.4222 17 7 2.2287 0.0485 2.3814 18 6 2.2005 -0.4930 3.6153 19 8 2.0567 -1.6899 3.7490 20 6 2.3477 0.3885 4.8287 21 6 1.2943 0.2555 5.9303 22 6 0.1719 -0.7617 5.7156 23 6 1.7597 0.4298 7.3775 24 6 1.3078 1.4926 5.0301 25 6 1.7856 2.8092 5.6458 26 6 0.1978 1.6168 3.9845 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3633 0.5510 0.8674 29 1 -0.3634 0.4757 -0.9109 30 1 1.4518 -1.6698 -1.4031 31 1 2.1541 -0.1717 -2.0843 32 1 6.6982 -2.3098 0.5890 33 1 4.2425 -0.6001 1.0596 34 1 3.6662 -2.2888 1.0413 35 1 2.3433 1.0058 2.2745 36 1 3.3722 0.6003 5.1344 37 1 0.2872 -1.5844 6.4213 38 1 -0.7920 -0.2785 5.8753 39 1 0.2208 -1.1471 4.6971 40 1 2.7912 0.7819 7.3874 41 1 1.1223 1.1582 7.8788 42 1 1.6971 -0.5263 7.8969 43 1 1.7420 3.5983 4.8950 44 1 1.1431 3.0716 6.4863 45 1 2.8120 2.6958 5.9945 46 1 -0.3013 0.6548 3.8682 47 1 -0.5256 2.3645 4.3095 48 1 0.6296 1.9198 3.0305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079534014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:18 Heat of formation + Delta-G solvation = -1.345821 kcal Electronic energy + Delta-G solvation = -25317.358576 eV Core-core repulsion = 21987.239961 eV Total energy + Delta-G solvation = -3330.118615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52032 -38.40260 -37.01529 -33.84878 -32.57650 -31.17589 -30.35001 -28.93045 -28.51540 -27.27577 -26.29933 -25.59405 -23.78585 -22.12024 -20.27378 -19.88434 -19.07885 -17.87831 -16.87815 -16.39452 -15.81285 -15.48637 -14.89552 -14.72508 -14.31943 -13.76722 -13.54915 -13.46967 -13.04288 -12.86406 -12.74976 -12.60515 -12.53081 -12.42226 -12.28474 -12.08141 -11.96279 -11.84615 -11.73857 -11.67052 -11.31774 -11.00510 -10.85127 -10.77704 -10.55224 -10.34163 -9.95883 -9.90340 -9.81196 -9.65999 -9.65499 -9.13411 -8.60139 -8.36167 -6.80780 -5.67108 -3.02138 3.03456 3.33683 3.41845 3.46861 3.49839 3.67412 4.49753 4.51899 4.56329 4.67932 4.92554 5.02727 5.08804 5.32840 5.36459 5.40653 5.44737 5.47634 5.56847 5.57250 5.62504 5.74554 5.77847 5.80238 5.83079 5.86585 5.89513 5.96723 5.98379 6.01993 6.02407 6.15313 6.18409 6.19484 6.23812 6.37572 6.42881 6.52421 6.65119 6.84976 6.98848 7.60100 7.62291 7.87823 8.00980 8.27864 8.69662 9.23780 9.84732 10.50174 11.43855 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.004200 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.575224 B = 6664.400121 C = 7354.204935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.087 0.913 17 N -0.707 5.707 18 C 0.546 3.454 19 O -0.535 6.535 20 C -0.170 4.170 21 C -0.089 4.089 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.122 4.122 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.041 0.959 32 H 0.251 0.749 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.395 0.605 36 H 0.128 0.872 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.305 10.533 11.098 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.105 0.895 17 N -0.357 5.357 18 C 0.332 3.668 19 O -0.412 6.412 20 C -0.191 4.191 21 C -0.090 4.090 22 C -0.179 4.179 23 C -0.170 4.170 24 C -0.111 4.111 25 C -0.171 4.171 26 C -0.179 4.179 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.229 0.771 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.180 9.576 11.190 19.112 hybrid contribution 1.141 0.191 -0.610 1.308 sum -11.039 9.767 10.579 18.143 Atomic orbital electron populations 1.21691 0.95115 1.01686 1.00929 1.22607 0.94754 0.99467 0.96507 0.90572 1.21572 0.87661 0.95019 0.94326 1.44473 1.07812 1.79194 1.01811 1.19100 0.89295 1.38454 0.88918 0.90283 1.24823 0.97867 1.01756 0.95988 1.69989 1.24008 1.53355 1.09286 0.86055 0.82397 0.77782 0.79591 1.20494 1.21815 1.21741 1.21508 0.90204 1.00331 0.83247 1.22478 1.00129 0.92808 0.83029 0.89462 1.45997 1.73405 1.10853 1.05450 1.19476 0.75911 0.87938 0.83508 1.90692 1.48968 1.15262 1.86291 1.22782 0.97508 1.01534 0.97261 1.21643 0.97711 0.97741 0.91893 1.21476 0.95649 0.97077 1.03690 1.21346 1.00752 1.01914 0.93016 1.21773 0.98335 0.90683 1.00290 1.21329 1.00852 0.94578 1.00315 1.21463 0.96744 1.02474 0.97211 0.92687 0.93151 0.92810 0.96130 0.94082 0.93805 0.93212 0.93545 0.77058 0.85435 0.92087 0.92666 0.90819 0.92321 0.92077 0.91976 0.91981 0.92077 0.92237 0.91798 0.92037 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.29 37.16 0.35 -1.47 16 2 C -0.11 -1.90 3.27 -88.47 -0.29 -2.18 16 3 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 4 C 0.14 2.89 6.69 -2.53 -0.02 2.87 16 5 N -0.61 -15.73 3.40 -169.86 -0.58 -16.31 16 6 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.91 10.34 55.49 0.57 -27.33 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.17 4.35 5.14 -2.92 -0.01 4.33 16 15 C 0.12 2.32 2.79 -66.10 -0.18 2.14 16 16 H 0.09 1.80 7.42 -51.93 -0.39 1.42 16 17 N -0.71 -11.51 4.40 -52.03 -0.23 -11.74 16 18 C 0.55 9.30 5.54 -10.99 -0.06 9.24 16 19 O -0.54 -11.31 14.92 5.55 0.08 -11.23 16 20 C -0.17 -2.24 5.42 -91.77 -0.50 -2.74 16 21 C -0.09 -1.02 2.70 -154.50 -0.42 -1.44 16 22 C -0.12 -1.49 7.95 37.16 0.30 -1.20 16 23 C -0.11 -1.06 8.88 37.16 0.33 -0.73 16 24 C -0.11 -1.14 2.70 -154.51 -0.42 -1.55 16 25 C -0.11 -0.94 8.87 37.16 0.33 -0.61 16 26 C -0.12 -1.21 8.37 37.16 0.31 -0.90 16 27 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 1.38 7.28 -51.93 -0.38 1.00 16 34 H 0.05 1.37 7.52 -51.93 -0.39 0.98 16 35 H 0.40 5.50 7.56 -40.82 -0.31 5.19 16 36 H 0.13 1.62 7.96 -51.93 -0.41 1.21 16 37 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 38 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.07 1.09 4.86 -51.93 -0.25 0.84 16 40 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 41 H 0.06 0.48 8.02 -51.93 -0.42 0.07 16 42 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 43 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.02 -51.93 -0.42 0.03 16 45 H 0.06 0.48 7.78 -51.93 -0.40 0.08 16 46 H 0.06 0.72 5.93 -51.93 -0.31 0.41 16 47 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 48 H 0.06 0.62 6.85 -51.93 -0.36 0.26 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -32.80 369.14 -8.73 -41.53 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.59 Total: 3.24 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.54 Total: -1.21 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.23 Total: -55.38 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.80 -8.73 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079534014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.189 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds