Wall clock time and date at job start Fri Apr 10 2020 20:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.88972 * 2 1 4 4 C 1.54917 * 111.00437 * 236.12061 * 2 1 3 5 5 N 1.47416 * 104.93059 * 204.86001 * 4 2 1 6 6 C 1.36939 * 125.64974 * 204.15507 * 5 4 2 7 7 H 1.08000 * 119.99999 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00006 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00081 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47298 * 120.00294 * 10 8 6 13 13 H 1.48503 * 109.47498 * 240.00689 * 10 8 6 14 14 C 1.47292 * 108.55819 * 24.15625 * 5 4 2 15 15 C 1.54325 * 107.30746 * 358.92145 * 14 5 4 16 16 H 1.09005 * 110.86543 * 96.24927 * 15 14 5 17 17 N 1.46490 * 110.72359 * 219.45298 * 15 14 5 18 18 C 1.34778 * 120.00533 * 268.52540 * 17 15 14 19 19 O 1.21287 * 119.99636 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00226 * 179.97438 * 18 17 15 21 21 C 1.53000 * 117.49388 * 128.44523 * 20 18 17 22 22 C 1.52996 * 117.50634 * 359.97438 * 21 20 18 23 23 C 1.53008 * 117.49611 * 145.02178 * 21 20 18 24 24 C 1.53001 * 117.49820 * 59.82310 * 20 18 17 25 25 C 1.52996 * 117.49959 * 214.97568 * 24 20 18 26 26 C 1.53000 * 117.49789 * 0.02562 * 24 20 18 27 27 H 1.09000 * 109.47230 * 182.42411 * 1 2 3 28 28 H 1.08994 * 109.47257 * 302.42403 * 1 2 3 29 29 H 1.09000 * 109.47514 * 62.42546 * 1 2 3 30 30 H 1.08996 * 110.36344 * 323.75776 * 4 2 1 31 31 H 1.09000 * 110.36507 * 85.96548 * 4 2 1 32 32 H 0.96994 * 119.99564 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.85827 * 239.50490 * 14 5 4 34 34 H 1.09002 * 110.00347 * 118.42993 * 14 5 4 35 35 H 0.97004 * 119.99763 * 88.52513 * 17 15 14 36 36 H 1.08996 * 115.55062 * 274.15310 * 20 18 17 37 37 H 1.08997 * 109.46935 * 111.38875 * 22 21 20 38 38 H 1.08996 * 109.47598 * 231.39362 * 22 21 20 39 39 H 1.09004 * 109.46390 * 351.39270 * 22 21 20 40 40 H 1.09003 * 109.46674 * 8.60787 * 23 21 20 41 41 H 1.09005 * 109.46783 * 128.60318 * 23 21 20 42 42 H 1.08993 * 109.47011 * 248.60604 * 23 21 20 43 43 H 1.09003 * 109.46974 * 111.38714 * 25 24 20 44 44 H 1.08998 * 109.47683 * 231.39133 * 25 24 20 45 45 H 1.08999 * 109.46868 * 351.39637 * 25 24 20 46 46 H 1.08995 * 109.47780 * 53.81965 * 26 24 20 47 47 H 1.09000 * 109.47263 * 173.82626 * 26 24 20 48 48 H 1.09006 * 109.46610 * 293.81470 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4279 -1.2428 -0.7767 6 6 4.4636 -1.5645 -1.6127 7 1 4.3312 -1.5078 -2.6831 8 6 5.6840 -1.9626 -1.0845 9 7 5.8456 -2.0313 0.2200 10 14 7.0966 -2.4022 -2.2250 11 1 6.6610 -2.2447 -3.6360 12 1 8.2465 -1.5011 -1.9589 13 1 7.5054 -3.8099 -1.9869 14 6 3.4674 -1.2744 0.6954 15 6 2.0862 -0.8084 1.2019 16 1 1.4451 -1.6620 1.4222 17 7 2.2287 0.0485 2.3814 18 6 2.2005 -0.4930 3.6153 19 8 2.0567 -1.6899 3.7490 20 6 2.3477 0.3885 4.8287 21 6 1.2943 0.2555 5.9303 22 6 0.1719 -0.7617 5.7156 23 6 1.7597 0.4298 7.3775 24 6 1.3078 1.4926 5.0301 25 6 1.7856 2.8092 5.6458 26 6 0.1978 1.6168 3.9845 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3633 0.5510 0.8674 29 1 -0.3634 0.4757 -0.9109 30 1 1.4518 -1.6698 -1.4031 31 1 2.1541 -0.1717 -2.0843 32 1 6.6982 -2.3098 0.5890 33 1 4.2425 -0.6001 1.0596 34 1 3.6662 -2.2888 1.0413 35 1 2.3433 1.0058 2.2745 36 1 3.3722 0.6003 5.1344 37 1 0.2872 -1.5844 6.4213 38 1 -0.7920 -0.2785 5.8753 39 1 0.2208 -1.1471 4.6971 40 1 2.7912 0.7819 7.3874 41 1 1.1223 1.1582 7.8788 42 1 1.6971 -0.5263 7.8969 43 1 1.7420 3.5983 4.8950 44 1 1.1431 3.0716 6.4863 45 1 2.8120 2.6958 5.9945 46 1 -0.3013 0.6548 3.8682 47 1 -0.5256 2.3645 4.3095 48 1 0.6296 1.9198 3.0305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079534014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:17 Heat of formation + Delta-G solvation = -21.804902 kcal Electronic energy + Delta-G solvation = -25318.245748 eV Core-core repulsion = 21987.239961 eV Total energy + Delta-G solvation = -3331.005787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69080 -39.83375 -38.48567 -35.62330 -34.25649 -32.18707 -31.99550 -30.09833 -29.51610 -28.68201 -27.34191 -27.07462 -25.44517 -23.47715 -21.88446 -21.55369 -20.39055 -18.91182 -18.72447 -17.64781 -17.36108 -16.94224 -16.50590 -15.71720 -15.68251 -15.51213 -14.84868 -14.55899 -14.51137 -14.26758 -14.05894 -13.69763 -13.59917 -13.35104 -13.29440 -13.23519 -13.07693 -13.05376 -12.93417 -12.91036 -12.68828 -12.61275 -12.58536 -12.16089 -12.00918 -11.87639 -11.69019 -11.62332 -11.48325 -10.96248 -10.78602 -10.61716 -10.22830 -9.91904 -8.95040 -7.87154 -5.25178 1.42738 1.44787 1.55243 1.67610 2.15881 2.47525 2.60458 3.31643 3.52606 3.63046 3.65575 3.70122 3.78257 4.04894 4.09738 4.14169 4.17225 4.30347 4.50988 4.58685 4.61458 4.71610 4.75611 4.80072 4.83272 4.86921 4.95836 5.00792 5.04683 5.05250 5.06473 5.07478 5.11947 5.16598 5.21936 5.23880 5.28496 5.36879 5.43102 5.43461 5.49080 5.57996 5.61478 5.78503 6.14027 6.64435 7.03911 7.34713 7.73120 8.37649 9.22719 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.004200 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.575224 B = 6664.400121 C = 7354.204935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 H 0.091 0.909 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.090 0.910 8 C -0.070 4.070 9 N -0.955 5.955 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.291 1.291 13 H -0.296 1.296 14 C 0.188 3.812 15 C 0.137 3.863 16 H 0.071 0.929 17 N -0.695 5.695 18 C 0.544 3.456 19 O -0.584 6.584 20 C -0.195 4.195 21 C -0.092 4.092 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.083 4.083 25 C -0.113 4.113 26 C -0.125 4.125 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.056 0.944 32 H 0.244 0.756 33 H 0.016 0.984 34 H -0.014 1.014 35 H 0.410 0.590 36 H 0.131 0.869 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 13.412 11.035 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.107 0.893 8 C -0.263 4.263 9 N -0.604 5.604 10 Si 0.809 3.191 11 H -0.184 1.184 12 H -0.217 1.217 13 H -0.223 1.223 14 C 0.062 3.938 15 C 0.031 3.969 16 H 0.089 0.911 17 N -0.346 5.346 18 C 0.332 3.668 19 O -0.464 6.464 20 C -0.216 4.216 21 C -0.093 4.093 22 C -0.177 4.177 23 C -0.168 4.168 24 C -0.083 4.083 25 C -0.170 4.170 26 C -0.182 4.182 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.004 0.996 35 H 0.247 0.753 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.917 12.507 11.101 21.756 hybrid contribution 1.635 -0.758 -0.610 1.902 sum -12.282 11.749 10.491 19.974 Atomic orbital electron populations 1.21644 0.91658 1.02047 1.03190 1.22526 0.97317 0.98820 0.92544 0.89043 1.21853 0.85197 0.95783 0.96496 1.44797 1.09508 1.79214 1.01946 1.19582 0.90094 1.37481 0.89843 0.89257 1.25742 1.00738 1.02375 0.97436 1.70255 1.24067 1.54793 1.11332 0.84967 0.78818 0.76746 0.78556 1.18359 1.21749 1.22345 1.21144 0.92872 0.96304 0.83493 1.22017 0.96172 0.93599 0.85110 0.91135 1.45848 1.73001 1.11197 1.04567 1.20210 0.74293 0.87772 0.84534 1.90664 1.51016 1.17725 1.87015 1.22752 0.98719 1.03671 0.96412 1.21822 0.96386 0.98303 0.92778 1.21430 0.97236 0.97433 1.01601 1.21364 1.01455 1.02446 0.91517 1.21919 0.96310 0.90873 0.99225 1.21385 1.01252 0.93223 1.01115 1.21524 0.96986 1.02376 0.97347 0.93351 0.91065 0.90342 0.95861 0.92594 0.94681 0.96532 0.99561 0.75306 0.85157 0.92618 0.90556 0.93836 0.91884 0.89847 0.92387 0.90833 0.90314 0.92123 0.93390 0.89636 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.29 71.98 0.67 -2.33 16 2 C -0.09 -2.95 3.27 -9.40 -0.03 -2.98 16 3 H 0.09 2.69 8.01 -2.39 -0.02 2.67 16 4 C 0.13 5.32 6.69 86.86 0.58 5.90 16 5 N -0.63 -33.47 3.40 -691.30 -2.35 -35.82 16 6 C -0.24 -13.92 10.28 84.03 0.86 -13.05 16 7 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 8 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 9 N -0.96 -61.08 10.34 21.65 0.22 -60.86 16 10 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 14 C 0.19 10.05 5.14 86.68 0.45 10.50 16 15 C 0.14 5.43 2.79 46.18 0.13 5.56 16 16 H 0.07 3.06 7.42 -2.38 -0.02 3.04 16 17 N -0.70 -22.96 4.40 -436.92 -1.92 -24.88 16 18 C 0.54 19.20 5.54 87.66 0.49 19.68 16 19 O -0.58 -26.31 14.92 -3.05 -0.05 -26.36 16 20 C -0.19 -5.08 5.42 -11.54 -0.06 -5.14 16 21 C -0.09 -2.00 2.70 -52.18 -0.14 -2.14 16 22 C -0.12 -2.90 7.95 71.98 0.57 -2.33 16 23 C -0.11 -1.86 8.88 71.98 0.64 -1.22 16 24 C -0.08 -1.51 2.70 -52.18 -0.14 -1.65 16 25 C -0.11 -1.44 8.87 71.98 0.64 -0.80 16 26 C -0.13 -2.13 8.37 71.98 0.60 -1.53 16 27 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.02 0.97 7.28 -2.39 -0.02 0.96 16 34 H -0.01 -0.89 7.52 -2.39 -0.02 -0.91 16 35 H 0.41 11.02 7.56 -92.71 -0.70 10.32 16 36 H 0.13 3.31 7.96 -2.39 -0.02 3.29 16 37 H 0.05 1.36 7.92 -2.39 -0.02 1.34 16 38 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.04 1.33 4.86 -2.38 -0.01 1.31 16 40 H 0.06 1.00 7.78 -2.39 -0.02 0.99 16 41 H 0.08 1.03 8.02 -2.38 -0.02 1.02 16 42 H 0.06 1.01 7.92 -2.39 -0.02 0.99 16 43 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 44 H 0.08 0.79 8.02 -2.39 -0.02 0.77 16 45 H 0.06 0.79 7.78 -2.39 -0.02 0.77 16 46 H 0.05 0.99 5.93 -2.39 -0.01 0.97 16 47 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 48 H 0.07 1.10 6.85 -2.38 -0.02 1.08 16 Total: -1.00 -77.17 369.14 3.87 -73.30 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.23 Total: 20.53 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.72 Total: 4.76 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -4.05 Total: -121.56 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -77.17 3.87 -73.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079534014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.490 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds