Wall clock time and date at job start Fri Apr 10 2020 20:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 C 1.53007 * 109.46847 * 184.99976 * 4 2 1 6 6 H 1.09003 * 109.47140 * 304.99458 * 5 4 2 7 7 C 1.53002 * 109.46719 * 185.00184 * 5 4 2 8 8 N 1.46494 * 109.47562 * 64.99922 * 5 4 2 9 9 C 1.34767 * 120.00283 * 204.99984 * 8 5 4 10 10 O 1.21285 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.50705 * 120.00126 * 179.97438 * 9 8 5 12 12 C 1.53946 * 113.57915 * 279.24179 * 11 9 8 13 13 C 1.53073 * 86.72740 * 220.69038 * 12 11 9 14 14 C 1.52910 * 121.17372 * 150.58492 * 13 12 11 15 15 C 1.53949 * 86.78019 * 100.75351 * 14 13 12 16 16 C 1.52903 * 121.06896 * 259.12730 * 13 12 11 17 17 C 1.52916 * 88.06670 * 24.83629 * 13 12 11 18 18 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 19 19 C 1.36935 * 119.99926 * 85.00376 * 18 2 1 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 2 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 2 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47045 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47426 * 119.99572 * 23 21 19 26 26 H 1.48501 * 109.46833 * 239.99815 * 23 21 19 27 27 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 28 28 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 30 30 H 1.08998 * 109.47231 * 304.99700 * 4 2 1 31 31 H 1.08998 * 109.47079 * 65.00233 * 4 2 1 32 32 H 1.09005 * 109.46774 * 180.02562 * 7 5 4 33 33 H 1.09003 * 109.46721 * 299.99530 * 7 5 4 34 34 H 1.08997 * 109.47675 * 59.99524 * 7 5 4 35 35 H 0.97005 * 119.99763 * 24.99950 * 8 5 4 36 36 H 1.08996 * 112.82333 * 50.33202 * 11 9 8 37 37 H 1.09002 * 113.66407 * 335.13704 * 12 11 9 38 38 H 1.08997 * 113.66385 * 106.19106 * 12 11 9 39 39 H 1.09000 * 113.66262 * 215.22457 * 14 13 12 40 40 H 1.08994 * 113.66467 * 346.28072 * 14 13 12 41 41 H 1.09002 * 113.58187 * 270.12949 * 15 14 13 42 42 H 1.09000 * 113.65073 * 139.34438 * 15 14 13 43 43 H 1.09000 * 113.66121 * 13.62396 * 16 13 12 44 44 H 1.09001 * 113.66438 * 144.68701 * 16 13 12 45 45 H 1.08999 * 113.65763 * 220.69431 * 17 13 12 46 46 H 1.08995 * 113.66201 * 89.63946 * 17 13 12 47 47 H 0.97005 * 120.00261 * 265.00500 * 18 2 1 48 48 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 1 3.9954 -0.9924 0.3868 7 6 4.0850 -1.4385 2.4925 8 7 3.9480 0.7892 1.4925 9 6 5.1612 1.2133 1.0868 10 8 5.9359 0.4337 0.5741 11 6 5.5551 2.6564 1.2702 12 6 4.9897 3.5917 0.1860 13 6 6.3515 4.2904 0.2026 14 6 6.9055 4.9742 -1.0478 15 6 6.4422 6.3019 -0.4213 16 6 6.5526 5.6094 0.9493 17 6 6.9563 2.9863 0.7242 18 7 2.0183 -0.6906 -1.1961 19 6 2.1492 -0.0075 -2.3757 20 1 1.8919 1.0403 -2.4243 21 6 2.6172 -0.6605 -3.5077 22 7 2.9357 -1.9361 -3.4472 23 14 2.7964 0.2715 -5.1166 24 1 2.3757 1.6822 -4.9210 25 1 4.2146 0.2338 -5.5553 26 1 1.9407 -0.3606 -6.1527 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6053 -0.2618 2.1370 31 1 1.7515 -1.7716 1.2055 32 1 5.1713 -1.3612 2.5387 33 1 3.6544 -1.0594 3.4193 34 1 3.7999 -2.4821 2.3595 35 1 3.3285 1.4127 1.9029 36 1 5.3875 3.0146 2.2858 37 1 4.7681 3.0874 -0.7546 38 1 4.1703 4.2203 0.5345 39 1 7.9878 4.8920 -1.1483 40 1 6.3728 4.7125 -1.9620 41 1 5.4224 6.5782 -0.6893 42 1 7.1508 7.1193 -0.5551 43 1 5.7379 5.8551 1.6305 44 1 7.5357 5.7057 1.4102 45 1 7.7058 3.1321 1.5020 46 1 7.2883 2.3117 -0.0649 47 1 2.2490 -1.6319 -1.1526 48 1 3.2631 -2.3924 -4.2381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135226413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:05 Heat of formation + Delta-G solvation = -3.203714 kcal Electronic energy + Delta-G solvation = -24891.544186 eV Core-core repulsion = 21561.345007 eV Total energy + Delta-G solvation = -3330.199179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76158 -38.94460 -36.76784 -34.61844 -34.27935 -32.08635 -30.57584 -28.55964 -26.31336 -25.91851 -25.78324 -25.39675 -23.57661 -22.21415 -20.69928 -19.71133 -19.63697 -17.96579 -17.29813 -16.84306 -15.83283 -15.61752 -15.26637 -14.77740 -14.33780 -14.23111 -13.89072 -13.61114 -13.08639 -12.96464 -12.75771 -12.67300 -12.44149 -12.16048 -12.07207 -11.99415 -11.85574 -11.69615 -11.56114 -11.04925 -10.99240 -10.88806 -10.80167 -10.57255 -10.37542 -10.27573 -10.16786 -10.11807 -9.98344 -9.84055 -9.58488 -9.19774 -8.84443 -8.58323 -6.87701 -5.69336 -2.96938 3.06847 3.47147 3.51762 3.54749 3.58297 4.34357 4.43722 4.55957 4.65255 4.71089 4.73823 4.79976 5.15038 5.32180 5.34833 5.38476 5.49149 5.54858 5.56831 5.64398 5.66361 5.73599 5.75158 5.78142 5.87913 5.94500 5.96152 5.97338 5.99972 6.04787 6.05818 6.18282 6.28991 6.33392 6.39186 6.40865 6.48241 6.53212 6.61718 6.79099 6.88735 7.02045 7.11285 7.75854 7.94697 8.49063 8.70756 9.60354 10.18378 10.52495 11.53602 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.005511 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.998440 B = 5079.440414 C = 6599.049806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.142 3.858 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.716 5.716 9 C 0.522 3.478 10 O -0.535 6.535 11 C -0.134 4.134 12 C -0.096 4.096 13 C -0.108 4.108 14 C -0.129 4.129 15 C -0.140 4.140 16 C -0.116 4.116 17 C -0.102 4.102 18 N -0.720 5.720 19 C -0.232 4.232 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.901 3.099 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.383 0.617 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 12.656 13.955 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.367 5.367 9 C 0.308 3.692 10 O -0.411 6.411 11 C -0.155 4.155 12 C -0.133 4.133 13 C -0.108 4.108 14 C -0.166 4.166 15 C -0.177 4.177 16 C -0.153 4.153 17 C -0.139 4.139 18 N -0.362 5.362 19 C -0.363 4.363 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.732 3.268 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.216 0.784 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.323 12.196 13.438 18.655 hybrid contribution -0.284 0.383 -0.717 0.861 sum 4.039 12.579 12.720 18.340 Atomic orbital electron populations 1.22460 0.99628 1.00757 0.99699 1.20213 0.91459 0.95559 0.86561 0.93619 1.22160 0.93914 1.02083 0.98738 1.21005 0.94928 0.80540 0.99707 0.87794 1.22176 1.01443 1.00142 0.98072 1.45982 1.16619 1.11347 1.62705 1.20344 0.81788 0.89552 0.77513 1.90704 1.51281 1.56339 1.42739 1.22705 0.99652 0.92570 1.00618 1.22629 0.95410 0.96273 0.99035 1.22459 0.97409 0.93399 0.97526 1.22747 1.00864 0.95679 0.97324 1.22819 1.01529 0.96773 0.96600 1.22650 1.01783 0.94488 0.96377 1.22675 0.94396 0.96041 1.00817 1.42401 1.77950 1.10549 1.05274 1.19184 1.36077 0.93685 0.87370 0.91516 1.24684 1.02252 0.95956 0.97922 1.69655 1.50861 1.08760 1.28680 0.86211 0.77327 0.78787 0.84459 1.20693 1.21931 1.22001 0.92955 0.93572 0.94769 0.92180 0.90788 0.92624 0.93271 0.91873 0.77425 0.87622 0.88658 0.90813 0.90031 0.91126 0.90254 0.91757 0.91471 0.89995 0.91372 0.88396 0.78373 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.49 37.15 0.35 -2.55 16 2 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.36 2.52 -67.93 -0.17 2.18 16 6 H 0.10 2.27 7.06 -51.93 -0.37 1.91 16 7 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 8 N -0.72 -10.59 4.45 -53.80 -0.24 -10.83 16 9 C 0.52 8.67 7.32 -10.99 -0.08 8.59 16 10 O -0.53 -11.43 15.56 5.55 0.09 -11.34 16 11 C -0.13 -1.69 4.14 -90.79 -0.38 -2.06 16 12 C -0.10 -1.19 7.40 -26.20 -0.19 -1.38 16 13 C -0.11 -1.20 1.11 -154.63 -0.17 -1.38 16 14 C -0.13 -1.41 7.84 -26.28 -0.21 -1.61 16 15 C -0.14 -1.28 8.08 -25.75 -0.21 -1.49 16 16 C -0.12 -1.04 7.84 -26.28 -0.21 -1.24 16 17 C -0.10 -1.29 7.16 -26.28 -0.19 -1.48 16 18 N -0.72 -17.75 4.49 -53.43 -0.24 -17.99 16 19 C -0.23 -6.44 9.93 -15.06 -0.15 -6.59 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 23 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 4.63 8.60 -40.82 -0.35 4.28 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.47 8.09 -51.93 -0.42 1.05 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 1.51 7.44 -51.93 -0.39 1.13 16 47 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -32.59 384.49 -9.52 -42.11 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -8.97 Total: 12.68 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.65 Total: -10.44 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.25 Total: -56.77 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.59 -9.52 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135226413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.904 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds