Wall clock time and date at job start Fri Apr 10 2020 20:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99935 * 2 1 3 5 5 C 1.53001 * 109.46729 * 174.99919 * 4 2 1 6 6 H 1.09003 * 109.47592 * 304.99681 * 5 4 2 7 7 C 1.53010 * 109.46950 * 185.00126 * 5 4 2 8 8 N 1.46497 * 109.47374 * 65.00283 * 5 4 2 9 9 C 1.36938 * 119.99819 * 204.99764 * 8 5 4 10 10 H 1.07999 * 120.00275 * 359.97438 * 9 8 5 11 11 C 1.38817 * 119.99500 * 179.97438 * 9 8 5 12 12 N 1.31615 * 120.00558 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99666 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47350 * 90.00111 * 13 11 9 15 15 H 1.48502 * 109.47110 * 209.99789 * 13 11 9 16 16 H 1.48501 * 109.47110 * 329.99854 * 13 11 9 17 17 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 18 18 C 1.34767 * 120.00003 * 274.99925 * 17 2 1 19 19 O 1.21281 * 120.00199 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99889 * 179.97438 * 18 17 2 21 21 C 1.51840 * 108.65099 * 301.98884 * 20 18 17 22 22 C 1.53116 * 110.72525 * 172.26442 * 21 20 18 23 23 C 1.51368 * 108.48290 * 85.91784 * 22 21 20 24 24 C 1.29532 * 120.35727 * 288.06956 * 23 22 21 25 25 C 1.51373 * 120.36284 * 0.02562 * 24 23 22 26 26 C 1.51853 * 108.65032 * 178.02043 * 20 18 17 27 27 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 30 30 H 1.08998 * 109.47192 * 294.99774 * 4 2 1 31 31 H 1.09000 * 109.46875 * 55.00176 * 4 2 1 32 32 H 1.09006 * 109.46687 * 59.99775 * 7 5 4 33 33 H 1.08998 * 109.47154 * 180.02562 * 7 5 4 34 34 H 1.09003 * 109.46609 * 300.00156 * 7 5 4 35 35 H 0.97001 * 119.99753 * 24.99896 * 8 5 4 36 36 H 0.96996 * 120.00319 * 180.02562 * 12 11 9 37 37 H 0.96996 * 119.99678 * 95.00711 * 17 2 1 38 38 H 1.09005 * 108.60134 * 60.00588 * 20 18 17 39 39 H 1.09005 * 109.22302 * 292.71903 * 21 20 18 40 40 H 1.08991 * 109.22407 * 52.06782 * 21 20 18 41 41 H 1.09008 * 109.68853 * 326.21461 * 22 21 20 42 42 H 1.09000 * 109.67607 * 205.61242 * 22 21 20 43 43 H 1.07994 * 119.82251 * 108.08824 * 23 22 21 44 44 H 1.08001 * 119.81669 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.60409 * 312.15971 * 25 24 23 46 46 H 1.08996 * 109.61071 * 191.63961 * 25 24 23 47 47 H 1.08999 * 109.22223 * 307.93079 * 26 20 18 48 48 H 1.08996 * 109.21904 * 67.31765 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0646 -1.2249 -2.6240 8 7 4.1537 -1.3341 -0.1823 9 6 5.3944 -0.9854 0.2807 10 1 5.9389 -0.1793 -0.1884 11 6 5.9521 -1.6682 1.3530 12 7 5.2887 -2.6510 1.9243 13 14 7.6448 -1.1930 1.9841 14 1 7.5071 -0.1551 3.0371 15 1 8.3147 -2.3899 2.5535 16 1 8.4583 -0.6566 0.8636 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6489 -0.7288 3.5878 21 6 1.7268 -1.8984 3.8831 22 6 2.2966 -2.7671 5.0079 23 6 1.8584 -2.1833 6.3339 24 6 2.3736 -1.0752 6.7636 25 6 3.4199 -0.3498 5.9448 26 6 2.7394 0.2740 4.7245 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -1.7715 -1.2055 31 1 1.6054 -0.2617 -2.1369 32 1 3.6264 -0.6885 -3.4657 33 1 5.1509 -1.1484 -2.6697 34 1 3.7723 -2.2741 -2.6698 35 1 3.6648 -2.0584 0.2387 36 1 5.6783 -3.1278 2.6737 37 1 2.2491 -1.6317 1.1527 38 1 3.6474 -1.1151 3.3834 39 1 0.7492 -1.5187 4.1803 40 1 1.6172 -2.5049 2.9841 41 1 3.3852 -2.7724 4.9523 42 1 1.9180 -3.7849 4.9133 43 1 1.1124 -2.6935 6.9251 44 1 2.0548 -0.6667 7.7112 45 1 4.1825 -1.0564 5.6172 46 1 3.8784 0.4335 6.5484 47 1 3.3156 1.1386 4.3952 48 1 1.7351 0.5959 4.9999 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146374721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:54 Heat of formation + Delta-G solvation = -31.468417 kcal Electronic energy + Delta-G solvation = -25930.363608 eV Core-core repulsion = 22598.938780 eV Total energy + Delta-G solvation = -3331.424829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71316 -37.79865 -36.54251 -34.12527 -32.63020 -31.97954 -31.42973 -30.22535 -28.49972 -26.31598 -25.47793 -23.66109 -23.56526 -21.73247 -20.29165 -20.12283 -19.03811 -17.71296 -17.16822 -16.63287 -16.01289 -15.46547 -14.81853 -14.56417 -14.04588 -13.78648 -13.75917 -13.34182 -13.13830 -12.90939 -12.67209 -12.62207 -12.34658 -12.10167 -11.81690 -11.73504 -11.65176 -11.62724 -11.30959 -10.98377 -10.94352 -10.82714 -10.72370 -10.34731 -10.23915 -10.19291 -10.14027 -9.96846 -9.87452 -9.67177 -9.04730 -8.93980 -8.65376 -8.23617 -6.93437 -5.80117 -3.05658 2.54531 3.41822 3.47725 3.49278 3.50230 3.96239 4.58433 4.96582 5.12647 5.18459 5.27722 5.44041 5.45219 5.48691 5.51670 5.56987 5.57412 5.72146 5.81146 5.89096 5.90430 5.96006 6.02137 6.04210 6.12003 6.16486 6.22136 6.26682 6.27784 6.38930 6.39711 6.45802 6.53320 6.59146 6.59511 6.63195 6.67804 6.87565 6.92788 6.94999 7.07431 7.17237 7.31280 7.70354 8.33228 8.40214 9.06990 9.50724 10.05113 10.41190 11.41905 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.007445 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.553394 B = 3760.024259 C = 5396.059334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.226 4.226 10 H 0.066 0.934 11 C -0.010 4.010 12 N -0.931 5.931 13 Si 0.896 3.104 14 H -0.291 1.291 15 H -0.293 1.293 16 H -0.285 1.285 17 N -0.697 5.697 18 C 0.532 3.468 19 O -0.570 6.570 20 C -0.110 4.110 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.094 4.094 26 C -0.088 4.088 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.378 0.622 36 H 0.253 0.747 37 H 0.404 0.596 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 0.138 2.141 9.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.357 4.357 10 H 0.084 0.916 11 C -0.205 4.205 12 N -0.580 5.580 13 Si 0.728 3.272 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.211 1.211 17 N -0.349 5.349 18 C 0.319 3.681 19 O -0.450 6.450 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.177 4.177 24 C -0.175 4.175 25 C -0.131 4.131 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.213 0.787 36 H 0.063 0.937 37 H 0.242 0.758 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.105 1.036 2.181 9.420 hybrid contribution 1.025 -0.507 0.468 1.235 sum -8.080 0.529 2.649 8.519 Atomic orbital electron populations 1.22199 0.96536 1.01468 1.01758 1.20767 0.92327 0.97689 0.84887 0.90156 1.22196 0.97756 1.00540 0.96667 1.20278 0.89751 0.95833 0.88194 0.93509 1.22424 1.01480 1.00323 0.98110 1.42439 1.18659 1.39948 1.34794 1.19194 0.93227 1.12921 1.10360 0.91606 1.24550 0.98202 0.98717 0.99032 1.69587 1.37868 1.24551 1.26034 0.86355 0.84858 0.77220 0.78815 1.21805 1.21937 1.21111 1.45989 1.65948 1.14356 1.08649 1.20530 0.75931 0.86777 0.84873 1.90583 1.51947 1.16565 1.85878 1.21035 1.03360 0.95942 0.92764 1.21125 0.97867 0.95529 0.98428 1.20801 1.01876 0.98143 0.91716 1.22579 1.00127 0.97346 0.97692 1.22544 0.98974 0.96792 0.99200 1.20854 0.96918 0.99385 0.95930 1.21009 1.01012 0.97513 0.93055 0.92339 0.92923 0.92518 0.91845 0.91007 0.94640 0.92917 0.93641 0.78695 0.93676 0.75820 0.85879 0.92600 0.91434 0.90042 0.91717 0.88130 0.88134 0.90577 0.91860 0.91257 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 2 C 0.15 2.43 2.57 -67.93 -0.17 2.25 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.13 -2.01 4.43 -26.73 -0.12 -2.13 16 5 C 0.17 3.14 2.89 -67.93 -0.20 2.94 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 8 N -0.72 -15.83 3.84 -53.42 -0.21 -16.04 16 9 C -0.23 -5.77 9.93 -15.06 -0.15 -5.92 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -24.10 12.76 55.49 0.71 -23.39 16 13 Si 0.90 21.49 29.55 -169.99 -5.02 16.46 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 N -0.70 -12.54 3.60 -53.80 -0.19 -12.73 16 18 C 0.53 10.54 7.08 -10.99 -0.08 10.46 16 19 O -0.57 -12.77 15.45 5.56 0.09 -12.68 16 20 C -0.11 -1.99 2.05 -92.94 -0.19 -2.18 16 21 C -0.09 -1.42 4.87 -27.26 -0.13 -1.55 16 22 C -0.09 -1.27 5.63 -27.50 -0.15 -1.42 16 23 C -0.16 -2.11 9.34 -35.29 -0.33 -2.44 16 24 C -0.16 -2.11 9.34 -35.29 -0.33 -2.44 16 25 C -0.09 -1.41 5.61 -27.54 -0.15 -1.56 16 26 C -0.09 -1.51 4.28 -27.31 -0.12 -1.63 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.38 8.55 5.70 -40.82 -0.23 8.32 16 36 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.40 7.35 5.65 -40.82 -0.23 7.12 16 38 H 0.12 2.60 7.59 -51.93 -0.39 2.20 16 39 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 40 H 0.07 1.04 7.11 -51.93 -0.37 0.67 16 41 H 0.08 1.32 6.68 -51.92 -0.35 0.97 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.10 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.08 1.24 6.68 -51.93 -0.35 0.89 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 48 H 0.06 1.02 7.85 -51.93 -0.41 0.62 16 LS Contribution 371.27 15.07 5.60 5.60 Total: -1.00 -27.22 371.27 -9.12 -36.34 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -8.57 Total: 16.71 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.52 Total: -10.28 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.31 Total: -52.16 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.22 -9.12 -36.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146374721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.872 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds