Wall clock time and date at job start Fri Apr 10 2020 20:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99935 * 2 1 3 5 5 C 1.53001 * 109.46729 * 174.99919 * 4 2 1 6 6 H 1.09003 * 109.47592 * 304.99681 * 5 4 2 7 7 C 1.53010 * 109.46950 * 185.00126 * 5 4 2 8 8 N 1.46497 * 109.47374 * 65.00283 * 5 4 2 9 9 C 1.36938 * 119.99819 * 204.99764 * 8 5 4 10 10 H 1.07999 * 120.00275 * 359.97438 * 9 8 5 11 11 C 1.38817 * 119.99500 * 179.97438 * 9 8 5 12 12 N 1.31615 * 120.00558 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99666 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47350 * 90.00111 * 13 11 9 15 15 H 1.48502 * 109.47110 * 209.99789 * 13 11 9 16 16 H 1.48501 * 109.47110 * 329.99854 * 13 11 9 17 17 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 18 18 C 1.34767 * 120.00003 * 274.99925 * 17 2 1 19 19 O 1.21281 * 120.00199 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99889 * 179.97438 * 18 17 2 21 21 C 1.51840 * 108.65099 * 301.98884 * 20 18 17 22 22 C 1.53116 * 110.72525 * 172.26442 * 21 20 18 23 23 C 1.51368 * 108.48290 * 85.91784 * 22 21 20 24 24 C 1.29532 * 120.35727 * 288.06956 * 23 22 21 25 25 C 1.51373 * 120.36284 * 0.02562 * 24 23 22 26 26 C 1.51853 * 108.65032 * 178.02043 * 20 18 17 27 27 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 30 30 H 1.08998 * 109.47192 * 294.99774 * 4 2 1 31 31 H 1.09000 * 109.46875 * 55.00176 * 4 2 1 32 32 H 1.09006 * 109.46687 * 59.99775 * 7 5 4 33 33 H 1.08998 * 109.47154 * 180.02562 * 7 5 4 34 34 H 1.09003 * 109.46609 * 300.00156 * 7 5 4 35 35 H 0.97001 * 119.99753 * 24.99896 * 8 5 4 36 36 H 0.96996 * 120.00319 * 180.02562 * 12 11 9 37 37 H 0.96996 * 119.99678 * 95.00711 * 17 2 1 38 38 H 1.09005 * 108.60134 * 60.00588 * 20 18 17 39 39 H 1.09005 * 109.22302 * 292.71903 * 21 20 18 40 40 H 1.08991 * 109.22407 * 52.06782 * 21 20 18 41 41 H 1.09008 * 109.68853 * 326.21461 * 22 21 20 42 42 H 1.09000 * 109.67607 * 205.61242 * 22 21 20 43 43 H 1.07994 * 119.82251 * 108.08824 * 23 22 21 44 44 H 1.08001 * 119.81669 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.60409 * 312.15971 * 25 24 23 46 46 H 1.08996 * 109.61071 * 191.63961 * 25 24 23 47 47 H 1.08999 * 109.22223 * 307.93079 * 26 20 18 48 48 H 1.08996 * 109.21904 * 67.31765 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0646 -1.2249 -2.6240 8 7 4.1537 -1.3341 -0.1823 9 6 5.3944 -0.9854 0.2807 10 1 5.9389 -0.1793 -0.1884 11 6 5.9521 -1.6682 1.3530 12 7 5.2887 -2.6510 1.9243 13 14 7.6448 -1.1930 1.9841 14 1 7.5071 -0.1551 3.0371 15 1 8.3147 -2.3899 2.5535 16 1 8.4583 -0.6566 0.8636 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6489 -0.7288 3.5878 21 6 1.7268 -1.8984 3.8831 22 6 2.2966 -2.7671 5.0079 23 6 1.8584 -2.1833 6.3339 24 6 2.3736 -1.0752 6.7636 25 6 3.4199 -0.3498 5.9448 26 6 2.7394 0.2740 4.7245 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -1.7715 -1.2055 31 1 1.6054 -0.2617 -2.1369 32 1 3.6264 -0.6885 -3.4657 33 1 5.1509 -1.1484 -2.6697 34 1 3.7723 -2.2741 -2.6698 35 1 3.6648 -2.0584 0.2387 36 1 5.6783 -3.1278 2.6737 37 1 2.2491 -1.6317 1.1527 38 1 3.6474 -1.1151 3.3834 39 1 0.7492 -1.5187 4.1803 40 1 1.6172 -2.5049 2.9841 41 1 3.3852 -2.7724 4.9523 42 1 1.9180 -3.7849 4.9133 43 1 1.1124 -2.6935 6.9251 44 1 2.0548 -0.6667 7.7112 45 1 4.1825 -1.0564 5.6172 46 1 3.8784 0.4335 6.5484 47 1 3.3156 1.1386 4.3952 48 1 1.7351 0.5959 4.9999 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146374721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:53 Heat of formation + Delta-G solvation = -44.934651 kcal Electronic energy + Delta-G solvation = -25930.947548 eV Core-core repulsion = 22598.938780 eV Total energy + Delta-G solvation = -3332.008768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19260 -39.10998 -38.05962 -35.75424 -34.17251 -33.51422 -32.70377 -31.67937 -30.16270 -27.59710 -26.74847 -25.54620 -24.82151 -23.09317 -21.68518 -21.62975 -20.53582 -19.07961 -18.81793 -18.04808 -17.41651 -16.80809 -16.57853 -16.00479 -15.55414 -15.48377 -15.23241 -14.82997 -14.45716 -14.28880 -14.15407 -13.84118 -13.72940 -13.56610 -13.30911 -13.10746 -13.01283 -12.87733 -12.78919 -12.62861 -12.51670 -12.27996 -12.13731 -12.11325 -11.70705 -11.60300 -11.58139 -11.45875 -11.38057 -11.17254 -10.84359 -10.53276 -9.86418 -9.73685 -8.78796 -7.82106 -5.04224 1.45085 1.48091 1.49491 1.52271 1.91970 2.53022 2.61730 3.50335 3.75279 3.77232 3.89745 3.96152 4.08602 4.19341 4.23168 4.28402 4.34721 4.39750 4.56903 4.58078 4.63586 4.64608 4.71581 4.84038 4.86257 4.88245 4.91890 4.93980 5.02997 5.09019 5.12308 5.15397 5.17084 5.25109 5.28321 5.35402 5.37902 5.43549 5.52151 5.62208 5.65047 5.83910 5.87010 6.12067 6.40122 6.81801 7.48942 7.52241 8.20706 8.48742 9.38331 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.007445 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.553394 B = 3760.024259 C = 5396.059334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.051 0.949 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.153 4.153 8 N -0.718 5.718 9 C -0.230 4.230 10 H 0.052 0.948 11 C -0.046 4.046 12 N -0.935 5.935 13 Si 0.936 3.064 14 H -0.299 1.299 15 H -0.295 1.295 16 H -0.286 1.286 17 N -0.691 5.691 18 C 0.522 3.478 19 O -0.602 6.602 20 C -0.102 4.102 21 C -0.084 4.084 22 C -0.087 4.087 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.091 4.091 26 C -0.083 4.083 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.375 0.625 36 H 0.249 0.751 37 H 0.404 0.596 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.910 -0.769 1.843 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.069 0.931 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.213 4.213 8 N -0.361 5.361 9 C -0.362 4.362 10 H 0.070 0.930 11 C -0.240 4.240 12 N -0.586 5.586 13 Si 0.768 3.232 14 H -0.227 1.227 15 H -0.221 1.221 16 H -0.212 1.212 17 N -0.341 5.341 18 C 0.310 3.690 19 O -0.485 6.485 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.174 4.174 24 C -0.180 4.180 25 C -0.128 4.128 26 C -0.121 4.121 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.210 0.790 36 H 0.059 0.941 37 H 0.242 0.758 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.952 0.120 1.839 11.106 hybrid contribution 1.621 -0.172 0.474 1.698 sum -9.331 -0.052 2.313 9.613 Atomic orbital electron populations 1.22087 0.93950 1.02646 1.02123 1.20921 0.94292 0.96120 0.84785 0.93062 1.22110 0.94838 1.01492 0.97269 1.20484 0.92172 0.94302 0.87732 0.95580 1.22269 1.00012 1.00826 0.98174 1.42468 1.17681 1.40118 1.35842 1.19261 0.94481 1.12256 1.10235 0.92961 1.24938 1.00054 0.99385 0.99658 1.69641 1.38152 1.24800 1.25982 0.85725 0.82985 0.76499 0.77989 1.22670 1.22131 1.21171 1.46031 1.65103 1.14211 1.08781 1.20898 0.75717 0.86520 0.85876 1.90556 1.53635 1.17823 1.86447 1.20973 1.02077 0.96808 0.92483 1.21072 0.97527 0.94528 0.99039 1.20767 1.00454 0.99005 0.92221 1.22737 1.00370 0.97226 0.97030 1.22629 0.98475 0.96926 0.99945 1.20793 0.97126 0.99489 0.95428 1.20944 1.00840 0.96556 0.93748 0.89758 0.91253 0.94396 0.90538 0.87534 0.91338 0.95320 0.93281 0.78988 0.94147 0.75846 0.89054 0.91680 0.91474 0.92348 0.89947 0.85399 0.85715 0.92350 0.90660 0.93926 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.48 71.98 0.68 -3.13 16 2 C 0.14 4.56 2.57 44.99 0.12 4.67 16 3 H 0.05 1.94 7.58 -2.38 -0.02 1.92 16 4 C -0.12 -3.30 4.43 30.59 0.14 -3.16 16 5 C 0.16 5.85 2.89 45.00 0.13 5.98 16 6 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 7 C -0.15 -4.96 9.49 71.99 0.68 -4.28 16 8 N -0.72 -31.95 3.84 -322.92 -1.24 -33.19 16 9 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 10 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 11 C -0.05 -2.43 5.50 84.86 0.47 -1.96 16 12 N -0.94 -49.17 12.76 21.65 0.28 -48.89 16 13 Si 0.94 45.03 29.55 68.60 2.03 47.05 16 14 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 15 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 17 N -0.69 -24.92 3.60 -442.52 -1.59 -26.51 16 18 C 0.52 21.27 7.08 87.66 0.62 21.89 16 19 O -0.60 -27.90 15.45 -3.03 -0.05 -27.95 16 20 C -0.10 -3.81 2.05 -12.30 -0.03 -3.83 16 21 C -0.08 -2.56 4.87 30.25 0.15 -2.41 16 22 C -0.09 -2.42 5.63 30.10 0.17 -2.25 16 23 C -0.16 -3.77 9.34 27.36 0.26 -3.51 16 24 C -0.16 -4.07 9.34 27.36 0.26 -3.81 16 25 C -0.09 -2.75 5.61 30.07 0.17 -2.58 16 26 C -0.08 -2.93 4.28 30.22 0.13 -2.80 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.38 16.98 5.70 -92.71 -0.53 16.45 16 36 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 37 H 0.40 14.65 5.65 -92.71 -0.52 14.12 16 38 H 0.09 4.05 7.59 -2.38 -0.02 4.03 16 39 H 0.06 1.87 7.86 -2.38 -0.02 1.85 16 40 H 0.07 2.03 7.11 -2.39 -0.02 2.01 16 41 H 0.06 1.91 6.68 -2.38 -0.02 1.90 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.06 1.97 6.68 -2.39 -0.02 1.95 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.04 1.69 7.81 -2.39 -0.02 1.67 16 48 H 0.06 2.16 7.85 -2.39 -0.02 2.14 16 Total: -1.00 -60.30 371.27 4.06 -56.23 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -0.13 Total: 45.60 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.77 Total: -12.34 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -2.56 Total: -108.59 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -60.30 4.06 -56.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146374721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.298 kcal (2) G-P(sol) polarization free energy of solvation -60.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds